assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	1	325518-325618	1	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	CTTTCCGAAAGTTTGAAACTTTCG	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|238aa|up_9|NC_015510.1_315899_316613_+,NA|395aa|up_8|NC_015510.1_316619_317804_+,NA|421aa|down_2|NC_015510.1_329559_330821_+,NA|215aa|down_3|NC_015510.1_330821_331466_+,NA|344aa|down_4|NC_015510.1_331676_332708_-	NA|238aa|up_9|NC_015510.1_315899_316613_+	NA	NA|395aa|up_8|NC_015510.1_316619_317804_+	NA	NA|433aa|up_7|NC_015510.1_317865_319164_+	cd01335, Radical_SAM, Radical SAM superfamily	NA|347aa|up_6|NC_015510.1_319595_320636_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|115aa|up_5|NC_015510.1_320746_321091_+	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|83aa|up_4|NC_015510.1_321124_321373_+	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly	NA|168aa|up_3|NC_015510.1_321422_321926_+	cd01630, HAD_KDO-like, haloacid dehalogenase-like (HAD) hydrolase, similar to Escherichia coli 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) phosphatase KdsC, and rainbow trout N-acylneuraminate cytidylyltransferase	NA|309aa|up_2|NC_015510.1_321976_322903_+	cd13961, PT_UbiA_DGGGPS, Geranylgeranylglycerol-phosphate geranylgeranyltransferase	NA|191aa|up_1|NC_015510.1_322902_323475_+	PRK00648, PRK00648, Maf-like protein; Reviewed	NA|633aa|up_0|NC_015510.1_323586_325485_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|356aa|down_0|NC_015510.1_325712_326780_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|526aa|down_1|NC_015510.1_327379_328957_+	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2)	NA|421aa|down_2|NC_015510.1_329559_330821_+	NA	NA|215aa|down_3|NC_015510.1_330821_331466_+	NA	NA|344aa|down_4|NC_015510.1_331676_332708_-	NA	NA|218aa|down_5|NC_015510.1_333406_334060_-	pfam13709, DUF4159, Domain of unknown function (DUF4159)	NA|235aa|down_6|NC_015510.1_334152_334857_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|446aa|down_7|NC_015510.1_335019_336357_+	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP	NA|175aa|down_8|NC_015510.1_336504_337029_+	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB	NA|662aa|down_9|NC_015510.1_337383_339369_+	pfam10459, Peptidase_S46, Peptidase S46
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	2	354071-354178	2	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	GTCGCAGTCCCCGTCAATTATGGAATGCTCTTCTAC	36	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA,NA|175aa|down_1|NC_015510.1_355728_356253_-	NA|246aa|up_9|NC_015510.1_345432_346170_+	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|137aa|up_8|NC_015510.1_346173_346584_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|130aa|up_7|NC_015510.1_346786_347176_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|163aa|up_6|NC_015510.1_347239_347728_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|230aa|up_5|NC_015510.1_347842_348532_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|348aa|up_4|NC_015510.1_348645_349689_-	PRK00943, PRK00943, selenide, water dikinase SelD	NA|345aa|up_3|NC_015510.1_349672_350707_-	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase	NA|305aa|up_2|NC_015510.1_350697_351612_-	pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase	NA|296aa|up_1|NC_015510.1_351863_352751_+	cd00436, UP_TbUP-like, uridine phosphorylases similar to Trypanosoma brucei UP	NA|350aa|up_0|NC_015510.1_352819_353869_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|115aa|down_0|NC_015510.1_355003_355348_-	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1	NA|175aa|down_1|NC_015510.1_355728_356253_-	NA	NA|219aa|down_2|NC_015510.1_356480_357137_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|1113aa|down_3|NC_015510.1_357467_360806_-	pfam14903, WG_beta_rep, WG containing repeat	NA|336aa|down_4|NC_015510.1_361014_362022_-	TIGR01128, DNA_polymerase_III_subunit_delta, DNA polymerase III, delta subunit	NA|925aa|down_5|NC_015510.1_362109_364884_+	pfam07583, PSCyt2, Protein of unknown function (DUF1549)	NA|500aa|down_6|NC_015510.1_364890_366390_+	pfam07394, DUF1501, Protein of unknown function (DUF1501)	NA|309aa|down_7|NC_015510.1_366491_367418_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|476aa|down_8|NC_015510.1_367709_369137_+	pfam07635, PSCyt1, Planctomycete cytochrome C	NA|231aa|down_9|NC_015510.1_369142_369835_-	cd17766, futalosine_nucleosidase_MqnB, futalosine nucleosidase which catalyzes the hydrolysis of futalosine to dehypoxanthinylfutalosine and a hypoxanthine base; similar to Thermus thermophiles MqnB
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	3	354343-354732	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	GTCGCAGTCCCCGTCAATTATGGAATGCTCTTCTAC,GTCGCAGTCCCCNTCAATTNTGGAATGCTCT,GTCGCAGTCCCCGTCAATTATGGAATGCTCTCCTAC	36,31,36	0	0	NA	NA	NA:NA:NA	5,5,4	5	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA,NA|175aa|down_1|NC_015510.1_355728_356253_-	NA|246aa|up_9|NC_015510.1_345432_346170_+	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|137aa|up_8|NC_015510.1_346173_346584_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|130aa|up_7|NC_015510.1_346786_347176_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|163aa|up_6|NC_015510.1_347239_347728_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|230aa|up_5|NC_015510.1_347842_348532_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|348aa|up_4|NC_015510.1_348645_349689_-	PRK00943, PRK00943, selenide, water dikinase SelD	NA|345aa|up_3|NC_015510.1_349672_350707_-	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase	NA|305aa|up_2|NC_015510.1_350697_351612_-	pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase	NA|296aa|up_1|NC_015510.1_351863_352751_+	cd00436, UP_TbUP-like, uridine phosphorylases similar to Trypanosoma brucei UP	NA|350aa|up_0|NC_015510.1_352819_353869_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|115aa|down_0|NC_015510.1_355003_355348_-	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1	NA|175aa|down_1|NC_015510.1_355728_356253_-	NA	NA|219aa|down_2|NC_015510.1_356480_357137_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|1113aa|down_3|NC_015510.1_357467_360806_-	pfam14903, WG_beta_rep, WG containing repeat	NA|336aa|down_4|NC_015510.1_361014_362022_-	TIGR01128, DNA_polymerase_III_subunit_delta, DNA polymerase III, delta subunit	NA|925aa|down_5|NC_015510.1_362109_364884_+	pfam07583, PSCyt2, Protein of unknown function (DUF1549)	NA|500aa|down_6|NC_015510.1_364890_366390_+	pfam07394, DUF1501, Protein of unknown function (DUF1501)	NA|309aa|down_7|NC_015510.1_366491_367418_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|476aa|down_8|NC_015510.1_367709_369137_+	pfam07635, PSCyt1, Planctomycete cytochrome C	NA|231aa|down_9|NC_015510.1_369142_369835_-	cd17766, futalosine_nucleosidase_MqnB, futalosine nucleosidase which catalyzes the hydrolysis of futalosine to dehypoxanthinylfutalosine and a hypoxanthine base; similar to Thermus thermophiles MqnB
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	4	611640-617749	2,4,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Unclear	CTCGCAATTGGATTAAGATGGGATTGAAACT,CTCGCAATTGGATTAAGATGGGATTGAAAC,CTCGCAATTGGATTAAGATGGGATTGAAAC,CTCGCAATTGGATTAAGATGGGATTGAAAC	31,30,30,30	0	0	NA	NA	NA:NA:NA:NA	90,92,92,90	92	Unclear	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA,NA|262aa|down_2|NC_015510.1_625626_626412_+,NA|142aa|down_3|NC_015510.1_626468_626894_+	NA|288aa|up_9|NC_015510.1_600615_601479_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	WYL|334aa|up_8|NC_015510.1_602093_603095_-	pfam13280, WYL, WYL domain	cas6|267aa|up_7|NC_015510.1_603242_604043_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas8b2|476aa|up_6|NC_015510.1_604082_605510_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|359aa|up_5|NC_015510.1_605530_606607_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|223aa|up_4|NC_015510.1_606603_607272_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|737aa|up_3|NC_015510.1_607333_609544_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|173aa|up_2|NC_015510.1_609553_610072_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|335aa|up_1|NC_015510.1_610123_611128_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NC_015510.1_611204_611468_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|484aa|down_0|NC_015510.1_617837_619289_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|down_1|NC_015510.1_619337_620084_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|262aa|down_2|NC_015510.1_625626_626412_+	NA	NA|142aa|down_3|NC_015510.1_626468_626894_+	NA	NA|75aa|down_4|NC_015510.1_626985_627210_+	pfam17330, SWC7, SWR1 chromatin-remodelling complex, subunit Swc7	NA|137aa|down_5|NC_015510.1_627213_627624_+	pfam13470, PIN_3, PIN domain	NA|343aa|down_6|NC_015510.1_629170_630199_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|343aa|down_7|NC_015510.1_630401_631430_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|820aa|down_8|NC_015510.1_631523_633983_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|556aa|down_9|NC_015510.1_634310_635978_+	cd18617, GH43_XynB-like, Glycosyl hydrolase family 43, such as Bacteroides ovatus alpha-L-arabinofuranosidase (BoGH43, XynB)
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	5	620125-625304	3,4,5	CRT,PILER-CR,CRISPRCasFinder	no	WYL,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Unclear	CTCGCAATTGGATTAAGATGGGATTGAAAC,CTCGCAATTGGATTAAGATGGGATTGAAAC,CTCGCAATTGGATTAAGATGGGATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	78,76,77	78	Unclear	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA,NA|262aa|down_0|NC_015510.1_625626_626412_+,NA|142aa|down_1|NC_015510.1_626468_626894_+	cas6|267aa|up_9|NC_015510.1_603242_604043_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas8b2|476aa|up_8|NC_015510.1_604082_605510_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|359aa|up_7|NC_015510.1_605530_606607_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|223aa|up_6|NC_015510.1_606603_607272_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|737aa|up_5|NC_015510.1_607333_609544_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|173aa|up_4|NC_015510.1_609553_610072_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|335aa|up_3|NC_015510.1_610123_611128_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_2|NC_015510.1_611204_611468_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|484aa|up_1|NC_015510.1_617837_619289_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|up_0|NC_015510.1_619337_620084_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|262aa|down_0|NC_015510.1_625626_626412_+	NA	NA|142aa|down_1|NC_015510.1_626468_626894_+	NA	NA|75aa|down_2|NC_015510.1_626985_627210_+	pfam17330, SWC7, SWR1 chromatin-remodelling complex, subunit Swc7	NA|137aa|down_3|NC_015510.1_627213_627624_+	pfam13470, PIN_3, PIN domain	NA|343aa|down_4|NC_015510.1_629170_630199_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|343aa|down_5|NC_015510.1_630401_631430_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|820aa|down_6|NC_015510.1_631523_633983_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|556aa|down_7|NC_015510.1_634310_635978_+	cd18617, GH43_XynB-like, Glycosyl hydrolase family 43, such as Bacteroides ovatus alpha-L-arabinofuranosidase (BoGH43, XynB)	NA|794aa|down_8|NC_015510.1_635985_638367_+	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|520aa|down_9|NC_015510.1_638877_640437_+	cd09001, GH43_FsAxh1-like, Glycosyl hydrolase family 43 such as Fibrobacter succinogenes subsp
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	6	628620-628757	4	CRT	no	cas4,cas1,cas2	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Unclear	ATCGAACAAGGTATCGAG	18	2	4	628674-628703|628674-628703|628674-628703|628722-628739	NC_015510.1_626170-626199|NC_015510.1_626182-626211|NC_015510.1_1993247-1993276|NC_015510.1_1993247-1993264	NA	3	3	Unclear	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|262aa|up_3|NC_015510.1_625626_626412_+,NA|142aa|up_2|NC_015510.1_626468_626894_+,NA	cas3|737aa|up_9|NC_015510.1_607333_609544_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|173aa|up_8|NC_015510.1_609553_610072_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|335aa|up_7|NC_015510.1_610123_611128_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_6|NC_015510.1_611204_611468_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|484aa|up_5|NC_015510.1_617837_619289_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|up_4|NC_015510.1_619337_620084_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|262aa|up_3|NC_015510.1_625626_626412_+	NA	NA|142aa|up_2|NC_015510.1_626468_626894_+	NA	NA|75aa|up_1|NC_015510.1_626985_627210_+	pfam17330, SWC7, SWR1 chromatin-remodelling complex, subunit Swc7	NA|137aa|up_0|NC_015510.1_627213_627624_+	pfam13470, PIN_3, PIN domain	NA|343aa|down_0|NC_015510.1_629170_630199_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|343aa|down_1|NC_015510.1_630401_631430_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|820aa|down_2|NC_015510.1_631523_633983_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|556aa|down_3|NC_015510.1_634310_635978_+	cd18617, GH43_XynB-like, Glycosyl hydrolase family 43, such as Bacteroides ovatus alpha-L-arabinofuranosidase (BoGH43, XynB)	NA|794aa|down_4|NC_015510.1_635985_638367_+	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|520aa|down_5|NC_015510.1_638877_640437_+	cd09001, GH43_FsAxh1-like, Glycosyl hydrolase family 43 such as Fibrobacter succinogenes subsp	NA|384aa|down_6|NC_015510.1_641208_642360_+	cd11294, E_set_Esterase_like_N, N-terminal Early set domain associated with the catalytic domain of putative esterases	NA|313aa|down_7|NC_015510.1_642374_643313_+	pfam06283, ThuA, Trehalose utilisation	NA|359aa|down_8|NC_015510.1_643338_644415_+	cd11294, E_set_Esterase_like_N, N-terminal Early set domain associated with the catalytic domain of putative esterases	NA|642aa|down_9|NC_015510.1_644672_646598_+	cd02858, E_set_Esterase_N, N-terminal Early set domain associated with the catalytic domain of esterase
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	7	869179-869326	6	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	AAACAGTGCGACTTCTCCGAAGTCG	25	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|436aa|up_9|NC_015510.1_852148_853456_+,NA|132aa|up_7|NC_015510.1_855928_856324_+,NA|123aa|up_5|NC_015510.1_856886_857255_-,NA|228aa|down_0|NC_015510.1_869353_870037_-,NA|386aa|down_3|NC_015510.1_872831_873989_-,NA|142aa|down_5|NC_015510.1_875470_875896_-,NA|172aa|down_7|NC_015510.1_877323_877839_+	NA|436aa|up_9|NC_015510.1_852148_853456_+	NA	NA|705aa|up_8|NC_015510.1_853535_855650_+	pfam10566, Glyco_hydro_97, Glycoside hydrolase 97	NA|132aa|up_7|NC_015510.1_855928_856324_+	NA	NA|133aa|up_6|NC_015510.1_856400_856799_-	cd10540, SET_SpSet7-like, SET domain found in Schizossacharomyces pombe Set7 and similar proteins	NA|123aa|up_5|NC_015510.1_856886_857255_-	NA	NA|608aa|up_4|NC_015510.1_857638_859462_+	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|231aa|up_3|NC_015510.1_859726_860419_-	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|878aa|up_2|NC_015510.1_860727_863361_-	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|459aa|up_1|NC_015510.1_863772_865149_-	cd05642, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily	NA|1141aa|up_0|NC_015510.1_865595_869018_+	pfam12770, CHAT, CHAT domain	NA|228aa|down_0|NC_015510.1_869353_870037_-	NA	NA|291aa|down_1|NC_015510.1_870114_870987_-	pfam04397, LytTR, LytTr DNA-binding domain	NA|498aa|down_2|NC_015510.1_871227_872721_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|386aa|down_3|NC_015510.1_872831_873989_-	NA	NA|452aa|down_4|NC_015510.1_873999_875355_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|142aa|down_5|NC_015510.1_875470_875896_-	NA	NA|403aa|down_6|NC_015510.1_875961_877170_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|172aa|down_7|NC_015510.1_877323_877839_+	NA	NA|195aa|down_8|NC_015510.1_877977_878562_+	pfam12883, DUF3828, Protein of unknown function (DUF3828)	NA|253aa|down_9|NC_015510.1_878662_879421_-	pfam04199, Cyclase, Putative cyclase
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	8	930377-930524	7	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	TGCGACTTCTCCGAAGTCGTAAAA	24	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|79aa|up_8|NC_015510.1_916346_916583_+,NA|320aa|up_6|NC_015510.1_916982_917942_-,NA|85aa|down_2|NC_015510.1_935394_935649_+,NA|107aa|down_3|NC_015510.1_935728_936049_+	NA|759aa|up_9|NC_015510.1_913813_916090_-	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase	NA|79aa|up_8|NC_015510.1_916346_916583_+	NA	NA|131aa|up_7|NC_015510.1_916567_916960_+	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins	NA|320aa|up_6|NC_015510.1_916982_917942_-	NA	NA|620aa|up_5|NC_015510.1_917934_919794_-	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase	NA|521aa|up_4|NC_015510.1_920027_921590_-	cd08977, SusD, starch binding outer membrane protein SusD	NA|1069aa|up_3|NC_015510.1_921623_924830_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|1033aa|up_2|NC_015510.1_925123_928222_-	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,	NA|375aa|up_1|NC_015510.1_928544_929669_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|165aa|up_0|NC_015510.1_929746_930241_+	pfam04011, LemA, LemA family	NA|456aa|down_0|NC_015510.1_930551_931919_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|959aa|down_1|NC_015510.1_932077_934954_+	PLN02563, PLN02563, aminoacyl-tRNA ligase	NA|85aa|down_2|NC_015510.1_935394_935649_+	NA	NA|107aa|down_3|NC_015510.1_935728_936049_+	NA	NA|2007aa|down_4|NC_015510.1_936312_942333_+	cd06263, MAM, Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain	NA|480aa|down_5|NC_015510.1_944050_945490_+	pfam01637, ATPase_2, ATPase domain predominantly from Archaea	NA|541aa|down_6|NC_015510.1_945581_947204_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|938aa|down_7|NC_015510.1_947501_950315_+	PRK10150, PRK10150, beta-D-glucuronidase; Provisional	NA|330aa|down_8|NC_015510.1_950417_951407_-	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|577aa|down_9|NC_015510.1_951668_953399_+	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	9	1861913-1862116	8,5	CRISPRCasFinder,CRT	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	CTATAATCATGTCACCCCTTCGGGGTTTCTC,TATAATCATGTCACCCCTTCGGGGTTTCTCT	31,31	0	0	NA	NA	NA:NA	3,3	3	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA,NA|213aa|down_3|NC_015510.1_1868426_1869065_-,NA|201aa|down_7|NC_015510.1_1876036_1876639_-	NA|242aa|up_9|NC_015510.1_1847788_1848514_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|173aa|up_8|NC_015510.1_1848804_1849323_-	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|131aa|up_7|NC_015510.1_1849621_1850014_-	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|504aa|up_6|NC_015510.1_1850296_1851808_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|293aa|up_5|NC_015510.1_1851844_1852723_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|1066aa|up_4|NC_015510.1_1852890_1856088_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|507aa|up_3|NC_015510.1_1856099_1857620_+	pfam12771, SusD-like_2, Starch-binding associating with outer membrane	NA|474aa|up_2|NC_015510.1_1857922_1859344_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|400aa|up_1|NC_015510.1_1859493_1860693_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|154aa|up_0|NC_015510.1_1861228_1861690_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|488aa|down_0|NC_015510.1_1862201_1863665_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|391aa|down_1|NC_015510.1_1863661_1864834_+	cd17257, RMtype1_S_EcoBI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|1113aa|down_2|NC_015510.1_1864830_1868169_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|213aa|down_3|NC_015510.1_1868426_1869065_-	NA	NA|399aa|down_4|NC_015510.1_1869203_1870400_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|839aa|down_5|NC_015510.1_1872225_1874742_-	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|398aa|down_6|NC_015510.1_1874834_1876028_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|201aa|down_7|NC_015510.1_1876036_1876639_-	NA	NA|351aa|down_8|NC_015510.1_1876907_1877960_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|265aa|down_9|NC_015510.1_1877956_1878751_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	10	2337935-2338010	9	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	ACAGAGATTAAGCGAGCAATACA	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|128aa|up_6|NC_015510.1_2332974_2333358_-,NA|250aa|up_2|NC_015510.1_2335046_2335796_-,NA|209aa|up_1|NC_015510.1_2335818_2336445_-,NA|209aa|down_1|NC_015510.1_2339832_2340459_-,NA|145aa|down_9|NC_015510.1_2350920_2351355_-	NA|408aa|up_9|NC_015510.1_2328552_2329776_+	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|407aa|up_8|NC_015510.1_2330131_2331352_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|440aa|up_7|NC_015510.1_2331450_2332770_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|128aa|up_6|NC_015510.1_2332974_2333358_-	NA	NA|337aa|up_5|NC_015510.1_2333399_2334410_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|109aa|up_4|NC_015510.1_2334416_2334743_-	TIGR03071, couple_hipA, HipA N-terminal domain	NA|70aa|up_3|NC_015510.1_2334748_2334958_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|250aa|up_2|NC_015510.1_2335046_2335796_-	NA	NA|209aa|up_1|NC_015510.1_2335818_2336445_-	NA	NA|479aa|up_0|NC_015510.1_2336471_2337908_-	pfam01637, ATPase_2, ATPase domain predominantly from Archaea	NA|586aa|down_0|NC_015510.1_2338015_2339773_-	TIGR01678, D-arabinono-14-lactone_oxidase, sugar 1,4-lactone oxidases	NA|209aa|down_1|NC_015510.1_2339832_2340459_-	NA	NA|835aa|down_2|NC_015510.1_2340525_2343030_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|246aa|down_3|NC_015510.1_2343186_2343924_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|248aa|down_4|NC_015510.1_2343994_2344738_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|1193aa|down_5|NC_015510.1_2344890_2348469_+	pfam02128, Peptidase_M36, Fungalysin metallopeptidase (M36)	NA|237aa|down_6|NC_015510.1_2348548_2349259_-	pfam13852, DUF4197, Protein of unknown function (DUF4197)	NA|230aa|down_7|NC_015510.1_2349493_2350183_+	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|206aa|down_8|NC_015510.1_2350294_2350912_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|145aa|down_9|NC_015510.1_2350920_2351355_-	NA
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	11	3344703-3344782	10	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	TTTTATTCACCACAGATTCGCACAGAT	27	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|164aa|up_9|NC_015510.1_3330918_3331410_+,NA|84aa|down_5|NC_015510.1_3351134_3351386_+	NA|164aa|up_9|NC_015510.1_3330918_3331410_+	NA	NA|1023aa|up_8|NC_015510.1_3331530_3334599_-	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|333aa|up_7|NC_015510.1_3334841_3335840_+	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|386aa|up_6|NC_015510.1_3336092_3337250_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|93aa|up_5|NC_015510.1_3337458_3337737_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|474aa|up_4|NC_015510.1_3337829_3339251_+	cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain	NA|391aa|up_3|NC_015510.1_3339687_3340860_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|518aa|up_2|NC_015510.1_3340998_3342552_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|125aa|up_1|NC_015510.1_3342792_3343167_+	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|409aa|up_0|NC_015510.1_3343304_3344531_-	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|190aa|down_0|NC_015510.1_3344858_3345428_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|229aa|down_1|NC_015510.1_3346136_3346823_+	pfam09414, RNA_ligase, RNA ligase	NA|377aa|down_2|NC_015510.1_3346731_3347862_+	COG4639, COG4639, Predicted kinase [General function prediction only]	NA|304aa|down_3|NC_015510.1_3348118_3349030_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|496aa|down_4|NC_015510.1_3349250_3350738_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|84aa|down_5|NC_015510.1_3351134_3351386_+	NA	NA|960aa|down_6|NC_015510.1_3351327_3354207_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|548aa|down_7|NC_015510.1_3354448_3356092_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|366aa|down_8|NC_015510.1_3356244_3357342_-	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]	NA|193aa|down_9|NC_015510.1_3357456_3358035_-	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	12	4303147-4303206	11	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	CATCAACAAATTAGCACATTAGC	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|272aa|up_9|NC_015510.1_4290974_4291790_+,NA|185aa|down_3|NC_015510.1_4306231_4306786_-,NA|144aa|down_8|NC_015510.1_4310416_4310848_-	NA|272aa|up_9|NC_015510.1_4290974_4291790_+	NA	NA|267aa|up_8|NC_015510.1_4291815_4292616_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|499aa|up_7|NC_015510.1_4292630_4294127_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|484aa|up_6|NC_015510.1_4294218_4295670_-	PRK05416, PRK05416, RNase adapter RapZ	NA|807aa|up_5|NC_015510.1_4295716_4298137_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|382aa|up_4|NC_015510.1_4298140_4299286_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|269aa|up_3|NC_015510.1_4299285_4300092_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|370aa|up_2|NC_015510.1_4300214_4301324_-	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins	NA|253aa|up_1|NC_015510.1_4301329_4302088_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|351aa|up_0|NC_015510.1_4302091_4303144_-	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs	NA|176aa|down_0|NC_015510.1_4303217_4303745_-	cd09895, NGN_SP_UpxY, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), UpxY	NA|373aa|down_1|NC_015510.1_4303810_4304929_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|400aa|down_2|NC_015510.1_4305035_4306235_-	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|185aa|down_3|NC_015510.1_4306231_4306786_-	NA	NA|418aa|down_4|NC_015510.1_4306877_4308131_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|347aa|down_5|NC_015510.1_4308202_4309243_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|229aa|down_6|NC_015510.1_4309347_4310034_-	pfam04172, LrgB, LrgB-like family	NA|113aa|down_7|NC_015510.1_4310030_4310369_-	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|144aa|down_8|NC_015510.1_4310416_4310848_-	NA	NA|287aa|down_9|NC_015510.1_4311287_4312148_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	13	4405455-4405534	12	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	AACACCAATCCAGGGAACAATCC	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|149aa|up_9|NC_015510.1_4395258_4395705_-,NA|186aa|down_6|NC_015510.1_4414931_4415489_+	NA|149aa|up_9|NC_015510.1_4395258_4395705_-	NA	NA|194aa|up_8|NC_015510.1_4395764_4396346_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|358aa|up_7|NC_015510.1_4396511_4397585_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|244aa|up_6|NC_015510.1_4397702_4398434_+	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|674aa|up_5|NC_015510.1_4398674_4400696_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|286aa|up_4|NC_015510.1_4400909_4401767_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|94aa|up_3|NC_015510.1_4401881_4402163_+	pfam02426, MIase, Muconolactone delta-isomerase	NA|183aa|up_2|NC_015510.1_4402191_4402740_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|138aa|up_1|NC_015510.1_4402723_4403137_+	pfam04138, GtrA, GtrA-like protein	NA|190aa|up_0|NC_015510.1_4403227_4403797_+	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|275aa|down_0|NC_015510.1_4406168_4406993_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|331aa|down_1|NC_015510.1_4407077_4408070_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|432aa|down_2|NC_015510.1_4408513_4409809_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|714aa|down_3|NC_015510.1_4410320_4412462_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|126aa|down_4|NC_015510.1_4412534_4412912_-	pfam16022, DUF4783, Domain of unknown function (DUF4783)	NA|511aa|down_5|NC_015510.1_4413290_4414823_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|186aa|down_6|NC_015510.1_4414931_4415489_+	NA	NA|571aa|down_7|NC_015510.1_4415565_4417278_-	pfam07980, SusD_RagB, SusD family	NA|1079aa|down_8|NC_015510.1_4417332_4420569_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|535aa|down_9|NC_015510.1_4420780_4422385_+	PRK09077, PRK09077, L-aspartate oxidase; Provisional
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	14	5727182-5727255	13	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	GGGCGACCCTACGTGGTCGCCCCA	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|143aa|up_0|NC_015510.1_5726752_5727181_+,NA|50aa|down_3|NC_015510.1_5730794_5730944_+,NA|264aa|down_5|NC_015510.1_5733049_5733841_+	NA|482aa|up_9|NC_015510.1_5715208_5716654_-	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily	NA|124aa|up_8|NC_015510.1_5716894_5717266_-	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily	NA|311aa|up_7|NC_015510.1_5717404_5718337_+	pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain	NA|462aa|up_6|NC_015510.1_5718361_5719747_+	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|520aa|up_5|NC_015510.1_5719830_5721390_+	pfam01082, Cu2_monooxygen, Copper type II ascorbate-dependent monooxygenase, N-terminal domain	NA|464aa|up_4|NC_015510.1_5721421_5722813_+	cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase	NA|532aa|up_3|NC_015510.1_5722895_5724491_-	TIGR02227, Inactive_signal_peptidase_IA	NA|410aa|up_2|NC_015510.1_5724603_5725833_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|271aa|up_1|NC_015510.1_5725929_5726742_+	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|143aa|up_0|NC_015510.1_5726752_5727181_+	NA	NA|523aa|down_0|NC_015510.1_5727267_5728836_+	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only]	NA|140aa|down_1|NC_015510.1_5729270_5729690_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|256aa|down_2|NC_015510.1_5729802_5730570_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|50aa|down_3|NC_015510.1_5730794_5730944_+	NA	NA|558aa|down_4|NC_015510.1_5731032_5732706_-	pfam17957, Big_7, Bacterial Ig domain	NA|264aa|down_5|NC_015510.1_5733049_5733841_+	NA	NA|249aa|down_6|NC_015510.1_5733846_5734593_-	COG4111, COG4111, Uncharacterized conserved protein [General function prediction only]	NA|228aa|down_7|NC_015510.1_5734842_5735526_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|323aa|down_8|NC_015510.1_5735603_5736572_-	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|436aa|down_9|NC_015510.1_5736723_5738031_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	15	7561404-7561479	14	CRISPRCasFinder	no		RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Orphan	AACCCACGATTTAAATCGTGGGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|167aa|up_3|NC_015510.1_7556449_7556950_-,NA|133aa|down_5|NC_015510.1_7567224_7567623_-	NA|1049aa|up_9|NC_015510.1_7547320_7550467_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|288aa|up_8|NC_015510.1_7550795_7551659_+	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain	NA|278aa|up_7|NC_015510.1_7551735_7552569_-	cd13635, PBP2_Ttha1568_Mqnd, A menaquinone biosynthetic enzyme exhibits the type 2 periplasmic-binding protein fold	NA|234aa|up_6|NC_015510.1_7552580_7553282_+	cd02869, PseudoU_synth_RluA_like, Pseudouridine synthase, RluA family	NA|321aa|up_5|NC_015510.1_7553424_7554387_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|466aa|up_4|NC_015510.1_7554458_7555856_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|167aa|up_3|NC_015510.1_7556449_7556950_-	NA	NA|362aa|up_2|NC_015510.1_7557054_7558140_-	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|315aa|up_1|NC_015510.1_7558232_7559177_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|505aa|up_0|NC_015510.1_7559418_7560933_+	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|719aa|down_0|NC_015510.1_7561508_7563665_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|271aa|down_1|NC_015510.1_7563713_7564526_+	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|223aa|down_2|NC_015510.1_7564506_7565175_+	COG1648, CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]	NA|244aa|down_3|NC_015510.1_7565301_7566033_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|335aa|down_4|NC_015510.1_7566144_7567149_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|133aa|down_5|NC_015510.1_7567224_7567623_-	NA	NA|931aa|down_6|NC_015510.1_7567769_7570562_-	TIGR04286, hypothetical_protein_HMPREF9455_00034, MSEP-CTERM protein	NA|171aa|down_7|NC_015510.1_7570545_7571058_-	TIGR04287, hypothetical_protein_HMPREF9455_00033, exosortase K	NA|324aa|down_8|NC_015510.1_7571133_7572105_-	TIGR02145, Fib_succ_major, Fibrobacter succinogenes major paralogous domain	NA|348aa|down_9|NC_015510.1_7572437_7573481_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	16	7792545-7795299	5,15,6	PILER-CR,CRISPRCasFinder,CRT	no	cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,RT,cas1,PD-DExK,cas2	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTCGCAGTCCCCGTCTGAAATGGAATACGCTCCTAC,GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC,GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC	36,36,36	0	0	NA	NA	NA:NA:NA	39,39,39	39	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|199aa|up_1|NC_015510.1_7790759_7791356_+,NA|76aa|down_0|NC_015510.1_7795482_7795710_+,NA|103aa|down_5|NC_015510.1_7799218_7799527_+	cmr1gr7|321aa|up_9|NC_015510.1_7782116_7783079_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|449aa|up_8|NC_015510.1_7783085_7784432_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|230aa|up_7|NC_015510.1_7784428_7785118_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	cas10|606aa|up_6|NC_015510.1_7785145_7786963_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|366aa|up_5|NC_015510.1_7786952_7788050_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|320aa|up_4|NC_015510.1_7788054_7789014_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|130aa|up_3|NC_015510.1_7789021_7789411_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|425aa|up_2|NC_015510.1_7789422_7790697_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	NA|199aa|up_1|NC_015510.1_7790759_7791356_+	NA	cas6|250aa|up_0|NC_015510.1_7791359_7792109_+	pfam17262, DUF5328, Family of unknown function (DUF5328)	NA|76aa|down_0|NC_015510.1_7795482_7795710_+	NA	NA|113aa|down_1|NC_015510.1_7795706_7796045_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|518aa|down_2|NC_015510.1_7796370_7797924_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|199aa|down_3|NC_015510.1_7797934_7798531_-	PRK10672, PRK10672, endolytic peptidoglycan transglycosylase RlpA	NA|113aa|down_4|NC_015510.1_7798857_7799196_+	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|103aa|down_5|NC_015510.1_7799218_7799527_+	NA	RT|349aa|down_6|NC_015510.1_7799606_7800653_+	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	cas1|326aa|down_7|NC_015510.1_7800835_7801813_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	PD-DExK|293aa|down_8|NC_015510.1_7801925_7802804_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	cas2|101aa|down_9|NC_015510.1_7803142_7803445_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]
GCF_000212735.1_ASM21273v1	NC_015510	Haliscomenobacter hydrossis DSM 1100, complete sequence	17	7803909-7805705	6,16,7	PILER-CR,CRISPRCasFinder,CRT	no	cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,RT,cas1,PD-DExK,cas2,DEDDh	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTCGCAGTCCCCGTCTGAAATGGAATACGCTCCTAC,GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC,GTAGGAGCGTATTCCATTTCAGACGGGGACTGCGAC	36,36,36	0	0	NA	NA	NA:NA:NA	24,25,25	25	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|76aa|up_9|NC_015510.1_7795482_7795710_+,NA|103aa|up_4|NC_015510.1_7799218_7799527_+,NA	NA|76aa|up_9|NC_015510.1_7795482_7795710_+	NA	NA|113aa|up_8|NC_015510.1_7795706_7796045_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|518aa|up_7|NC_015510.1_7796370_7797924_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|199aa|up_6|NC_015510.1_7797934_7798531_-	PRK10672, PRK10672, endolytic peptidoglycan transglycosylase RlpA	NA|113aa|up_5|NC_015510.1_7798857_7799196_+	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|103aa|up_4|NC_015510.1_7799218_7799527_+	NA	RT|349aa|up_3|NC_015510.1_7799606_7800653_+	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	cas1|326aa|up_2|NC_015510.1_7800835_7801813_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	PD-DExK|293aa|up_1|NC_015510.1_7801925_7802804_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	cas2|101aa|up_0|NC_015510.1_7803142_7803445_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|383aa|down_0|NC_015510.1_7805892_7807041_+	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|999aa|down_1|NC_015510.1_7807142_7810139_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|329aa|down_2|NC_015510.1_7810256_7811243_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|326aa|down_3|NC_015510.1_7811462_7812440_+	pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase	NA|245aa|down_4|NC_015510.1_7812592_7813327_+	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|268aa|down_5|NC_015510.1_7813444_7814248_-	cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins	DEDDh|464aa|down_6|NC_015510.1_7814365_7815757_-	PRK07883, PRK07883, DEDD exonuclease domain-containing protein	NA|281aa|down_7|NC_015510.1_7815753_7816596_-	pfam05154, TM2, TM2 domain	NA|579aa|down_8|NC_015510.1_7816757_7818494_-	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|356aa|down_9|NC_015510.1_7818625_7819693_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3
GCF_000212735.1_ASM21273v1	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	1	65795-67007	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6,RT,cmr6gr7,cmr4gr7,cmr3gr5,cas10,cmr1gr7	cas2,cas1,cas6,RT,cmr6gr7,cmr4gr7,cmr3gr5,cas10,cmr1gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC,GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC,GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC	37,37,37	0	0	NA	NA	NA:NA:NA	18,18,14	18	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|179aa|up_9|NC_015512.1_52894_53431_+,NA|84aa|up_8|NC_015512.1_53650_53902_+,NA|85aa|up_7|NC_015512.1_54148_54403_+,NA|280aa|up_6|NC_015512.1_54896_55736_-,NA|121aa|up_5|NC_015512.1_55732_56095_-,NA|138aa|down_5|NC_015512.1_71918_72332_-,cmr1gr7|446aa|down_9|NC_015512.1_76162_77500_-	NA|179aa|up_9|NC_015512.1_52894_53431_+	NA	NA|84aa|up_8|NC_015512.1_53650_53902_+	NA	NA|85aa|up_7|NC_015512.1_54148_54403_+	NA	NA|280aa|up_6|NC_015512.1_54896_55736_-	NA	NA|121aa|up_5|NC_015512.1_55732_56095_-	NA	NA|251aa|up_4|NC_015512.1_56478_57231_-	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|1031aa|up_3|NC_015512.1_57703_60796_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|943aa|up_2|NC_015512.1_60805_63634_-	sd00006, TPR, Tetratricopeptide repeat	NA|151aa|up_1|NC_015512.1_63903_64356_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|421aa|up_0|NC_015512.1_64490_65753_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	cas2|100aa|down_0|NC_015512.1_67210_67510_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|322aa|down_1|NC_015512.1_67515_68481_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas6|238aa|down_2|NC_015512.1_68487_69201_+	pfam17955, Cas6b_N, Cas6b N-terminal domain	RT|331aa|down_3|NC_015512.1_69204_70197_+	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	cmr6gr7|264aa|down_4|NC_015512.1_71127_71919_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	NA|138aa|down_5|NC_015512.1_71918_72332_-	NA	cmr4gr7|345aa|down_6|NC_015512.1_72309_73344_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|369aa|down_7|NC_015512.1_73356_74463_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|565aa|down_8|NC_015512.1_74464_76159_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr1gr7|446aa|down_9|NC_015512.1_76162_77500_-	NA
GCF_000212735.1_ASM21273v1	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	2	70335-70895	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6,RT,cmr6gr7,cmr4gr7,cmr3gr5,cas10,cmr1gr7	cas2,cas1,cas6,RT,cmr6gr7,cmr4gr7,cmr3gr5,cas10,cmr1gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTCGCGATTCGATAAGGAAACAGGCTCTTGGTGCACC,GTCGCGATTCGATAAGGAAACAGGCTCTNGGTGCACC,GTCGCGATTCGATAAGGAAACAGGCTCTTGGTGCAC	37,37,36	0	0	NA	NA	NA:NA:NA	8,8,5	8	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|121aa|up_9|NC_015512.1_55732_56095_-,NA|138aa|down_1|NC_015512.1_71918_72332_-,cmr1gr7|446aa|down_5|NC_015512.1_76162_77500_-,NA|117aa|down_7|NC_015512.1_80589_80940_+	NA|121aa|up_9|NC_015512.1_55732_56095_-	NA	NA|251aa|up_8|NC_015512.1_56478_57231_-	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|1031aa|up_7|NC_015512.1_57703_60796_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|943aa|up_6|NC_015512.1_60805_63634_-	sd00006, TPR, Tetratricopeptide repeat	NA|151aa|up_5|NC_015512.1_63903_64356_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|421aa|up_4|NC_015512.1_64490_65753_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	cas2|100aa|up_3|NC_015512.1_67210_67510_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|322aa|up_2|NC_015512.1_67515_68481_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas6|238aa|up_1|NC_015512.1_68487_69201_+	pfam17955, Cas6b_N, Cas6b N-terminal domain	RT|331aa|up_0|NC_015512.1_69204_70197_+	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	cmr6gr7|264aa|down_0|NC_015512.1_71127_71919_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	NA|138aa|down_1|NC_015512.1_71918_72332_-	NA	cmr4gr7|345aa|down_2|NC_015512.1_72309_73344_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|369aa|down_3|NC_015512.1_73356_74463_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|565aa|down_4|NC_015512.1_74464_76159_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr1gr7|446aa|down_5|NC_015512.1_76162_77500_-	NA	NA|898aa|down_6|NC_015512.1_77486_80180_-	pfam11118, DUF2627, Protein of unknown function (DUF2627)	NA|117aa|down_7|NC_015512.1_80589_80940_+	NA	NA|221aa|down_8|NC_015512.1_81723_82386_-	pfam02810, SEC-C, SEC-C motif	NA|392aa|down_9|NC_015512.1_82382_83558_-	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme
GCF_000212735.1_ASM21273v1	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	3	80405-81484	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6,RT,cmr6gr7,cmr4gr7,cmr3gr5,cas10,cmr1gr7	cas2,cas1,cas6,RT,cmr6gr7,cmr4gr7,cmr3gr5,cas10,cmr1gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTCGCGATTCGAAGAGGAAACAGGCTCTTGGTGCACC,GTCGCGATTCGAANAGGAAACAGGCTCTTGGTGCACC,AGGAAACAGGCTCTTGGTGCACC	37,37,23	0	0	NA	NA	NA:NA:NA	16,16,9	16	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,cas3,DEDDh,csa3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	NA|138aa|up_5|NC_015512.1_71918_72332_-,cmr1gr7|446aa|up_1|NC_015512.1_76162_77500_-,NA|118aa|down_2|NC_015512.1_84199_84553_+,NA|83aa|down_3|NC_015512.1_84596_84845_+,NA|107aa|down_6|NC_015512.1_87970_88291_-,NA|97aa|down_7|NC_015512.1_88325_88616_-,NA|78aa|down_9|NC_015512.1_89572_89806_-	cas1|322aa|up_9|NC_015512.1_67515_68481_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas6|238aa|up_8|NC_015512.1_68487_69201_+	pfam17955, Cas6b_N, Cas6b N-terminal domain	RT|331aa|up_7|NC_015512.1_69204_70197_+	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	cmr6gr7|264aa|up_6|NC_015512.1_71127_71919_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	NA|138aa|up_5|NC_015512.1_71918_72332_-	NA	cmr4gr7|345aa|up_4|NC_015512.1_72309_73344_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|369aa|up_3|NC_015512.1_73356_74463_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|565aa|up_2|NC_015512.1_74464_76159_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr1gr7|446aa|up_1|NC_015512.1_76162_77500_-	NA	NA|898aa|up_0|NC_015512.1_77486_80180_-	pfam11118, DUF2627, Protein of unknown function (DUF2627)	NA|221aa|down_0|NC_015512.1_81723_82386_-	pfam02810, SEC-C, SEC-C motif	NA|392aa|down_1|NC_015512.1_82382_83558_-	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme	NA|118aa|down_2|NC_015512.1_84199_84553_+	NA	NA|83aa|down_3|NC_015512.1_84596_84845_+	NA	NA|290aa|down_4|NC_015512.1_84983_85853_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|479aa|down_5|NC_015512.1_86369_87806_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|107aa|down_6|NC_015512.1_87970_88291_-	NA	NA|97aa|down_7|NC_015512.1_88325_88616_-	NA	NA|292aa|down_8|NC_015512.1_88664_89540_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|78aa|down_9|NC_015512.1_89572_89806_-	NA
