assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	1	149989-150067	1	CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA|226aa|down_4|NC_017174.1_161316_161994_+	NA|278aa|up_9|NC_017174.1_127132_127966_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NC_017174.1_127953_128820_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NC_017174.1_128813_129617_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NC_017174.1_129649_130381_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NC_017174.1_130500_130932_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NC_017174.1_130960_131353_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|NC_017174.1_131861_132566_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NC_017174.1_145039_146224_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NC_017174.1_146596_148948_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NC_017174.1_148969_149509_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NC_017174.1_157002_157842_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NC_017174.1_157838_159020_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NC_017174.1_159323_160226_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NC_017174.1_160247_161327_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NC_017174.1_161316_161994_+	NA	NA|72aa|down_5|NC_017174.1_162036_162252_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NC_017174.1_162280_163360_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NC_017174.1_163359_164112_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NC_017174.1_164112_164670_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NC_017174.1_164841_166188_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	2	698258-698365	2	CRISPRCasFinder	no	cas14j	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Unclear	TATTAATTGTATTTACTTATTTGATTG	27	0	0	NA	NA	NA	1	1	TypeV	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|254aa|up_2|NC_017174.1_695864_696626_+,NA|78aa|down_6|NC_017174.1_707331_707565_-	NA|305aa|up_9|NC_017174.1_685438_686353_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|746aa|up_8|NC_017174.1_686458_688696_+	pfam13654, AAA_32, AAA domain	NA|286aa|up_7|NC_017174.1_688893_689751_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|157aa|up_6|NC_017174.1_689944_690415_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|283aa|up_5|NC_017174.1_690449_691298_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|335aa|up_4|NC_017174.1_691585_692590_+	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	cas14j|373aa|up_3|NC_017174.1_693697_694816_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|up_2|NC_017174.1_695864_696626_+	NA	NA|273aa|up_1|NC_017174.1_696628_697447_+	pfam08812, YtxC, YtxC-like family	NA|201aa|up_0|NC_017174.1_697625_698228_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|640aa|down_0|NC_017174.1_699020_700940_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|364aa|down_1|NC_017174.1_701664_702756_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|66aa|down_2|NC_017174.1_703103_703301_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|447aa|down_3|NC_017174.1_703660_705001_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|190aa|down_4|NC_017174.1_705342_705912_-	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|417aa|down_5|NC_017174.1_706072_707323_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|NC_017174.1_707331_707565_-	NA	NA|193aa|down_7|NC_017174.1_707615_708194_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|487aa|down_8|NC_017174.1_708494_709955_+	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11	NA|202aa|down_9|NC_017174.1_710323_710929_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	3	966063-966297	3	CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	AAAATCAAACAGAAAAAATATGTATGGAAGCAGTTA	36	0	0	NA	NA	NA	3	3	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|115aa|up_0|NC_017174.1_965178_965523_-,NA	NA|252aa|up_9|NC_017174.1_954454_955210_+	cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	NA|240aa|up_8|NC_017174.1_955292_956012_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|265aa|up_7|NC_017174.1_956755_957550_+	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase	NA|447aa|up_6|NC_017174.1_957643_958984_+	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]	NA|411aa|up_5|NC_017174.1_959120_960353_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|381aa|up_4|NC_017174.1_960392_961535_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|265aa|up_3|NC_017174.1_961545_962340_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|341aa|up_2|NC_017174.1_962350_963373_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|459aa|up_1|NC_017174.1_963471_964848_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|115aa|up_0|NC_017174.1_965178_965523_-	NA	NA|163aa|down_0|NC_017174.1_967156_967645_+	COG0716, FldA, Flavodoxins [Energy production and conversion]	NA|643aa|down_1|NC_017174.1_967707_969636_+	cd01948, EAL, EAL domain	NA|137aa|down_2|NC_017174.1_969834_970245_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|101aa|down_3|NC_017174.1_970266_970569_+	cd05569, PTS_IIB_fructose, PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|232aa|down_4|NC_017174.1_970740_971436_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|396aa|down_5|NC_017174.1_971461_972649_-	cd17490, MFS_YxlH_like, Bacillus subtilis YxlH and similar transporters of the Major Facilitator Superfamily	NA|626aa|down_6|NC_017174.1_972984_974862_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|469aa|down_7|NC_017174.1_975192_976599_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|283aa|down_8|NC_017174.1_976626_977475_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|231aa|down_9|NC_017174.1_978134_978827_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	4	966389-966626	1,4	PILER-CR,CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	GTAAAAAATCAAACAGAAGAAATATGTATGGAAGCAGTTAG,AAAATCAAACAGAAAAAATATGTATGGAAGCAGTTA	41,36	0	0	NA	NA	NA:NA	2,3	3	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|115aa|up_0|NC_017174.1_965178_965523_-,NA	NA|252aa|up_9|NC_017174.1_954454_955210_+	cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	NA|240aa|up_8|NC_017174.1_955292_956012_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|265aa|up_7|NC_017174.1_956755_957550_+	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase	NA|447aa|up_6|NC_017174.1_957643_958984_+	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]	NA|411aa|up_5|NC_017174.1_959120_960353_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|381aa|up_4|NC_017174.1_960392_961535_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|265aa|up_3|NC_017174.1_961545_962340_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|341aa|up_2|NC_017174.1_962350_963373_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|459aa|up_1|NC_017174.1_963471_964848_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|115aa|up_0|NC_017174.1_965178_965523_-	NA	NA|163aa|down_0|NC_017174.1_967156_967645_+	COG0716, FldA, Flavodoxins [Energy production and conversion]	NA|643aa|down_1|NC_017174.1_967707_969636_+	cd01948, EAL, EAL domain	NA|137aa|down_2|NC_017174.1_969834_970245_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|101aa|down_3|NC_017174.1_970266_970569_+	cd05569, PTS_IIB_fructose, PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|232aa|down_4|NC_017174.1_970740_971436_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|396aa|down_5|NC_017174.1_971461_972649_-	cd17490, MFS_YxlH_like, Bacillus subtilis YxlH and similar transporters of the Major Facilitator Superfamily	NA|626aa|down_6|NC_017174.1_972984_974862_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|469aa|down_7|NC_017174.1_975192_976599_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|283aa|down_8|NC_017174.1_976626_977475_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|231aa|down_9|NC_017174.1_978134_978827_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	5	1343256-1343882	2,5,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	1	1	1343486-1343523	NC_017174.1_42250-42287	I-A:I-A:I-A	9,9,9	9	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|271aa|up_2|NC_017174.1_1340375_1341188_+,NA|53aa|up_0|NC_017174.1_1342810_1342969_+,NA|84aa|down_1|NC_017174.1_1344272_1344524_+,NA|63aa|down_2|NC_017174.1_1344688_1344877_-,NA|220aa|down_3|NC_017174.1_1345334_1345994_-,NA|65aa|down_7|NC_017174.1_1348128_1348323_-,NA|121aa|down_9|NC_017174.1_1349798_1350161_+	NA|442aa|up_9|NC_017174.1_1331838_1333164_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_8|NC_017174.1_1333376_1334456_+	pfam02618, YceG, YceG-like family	NA|225aa|up_7|NC_017174.1_1334627_1335302_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_6|NC_017174.1_1335288_1336536_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_5|NC_017174.1_1336607_1338272_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_4|NC_017174.1_1338369_1338654_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|505aa|up_3|NC_017174.1_1338679_1340194_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|271aa|up_2|NC_017174.1_1340375_1341188_+	NA	NA|482aa|up_1|NC_017174.1_1341227_1342673_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|53aa|up_0|NC_017174.1_1342810_1342969_+	NA	NA|45aa|down_0|NC_017174.1_1343959_1344094_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|down_1|NC_017174.1_1344272_1344524_+	NA	NA|63aa|down_2|NC_017174.1_1344688_1344877_-	NA	NA|220aa|down_3|NC_017174.1_1345334_1345994_-	NA	NA|146aa|down_4|NC_017174.1_1346049_1346487_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|55aa|down_5|NC_017174.1_1346810_1346975_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|170aa|down_6|NC_017174.1_1347510_1348020_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_7|NC_017174.1_1348128_1348323_-	NA	NA|139aa|down_8|NC_017174.1_1348815_1349232_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|121aa|down_9|NC_017174.1_1349798_1350161_+	NA
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	6	1679533-1679630	6	CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	TTATATTAACATAACTATATTTTACTTGATAAA	33	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA	NA|294aa|up_9|NC_017174.1_1668726_1669608_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|up_8|NC_017174.1_1669992_1670937_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|up_7|NC_017174.1_1671159_1671705_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|up_6|NC_017174.1_1671795_1672944_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]	NA|422aa|up_5|NC_017174.1_1672996_1674262_+	PRK09357, pyrC, dihydroorotase; Validated	NA|411aa|up_4|NC_017174.1_1674546_1675779_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|225aa|up_3|NC_017174.1_1675781_1676456_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|411aa|up_2|NC_017174.1_1676463_1677696_-	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|335aa|up_1|NC_017174.1_1677806_1678811_-	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|225aa|up_0|NC_017174.1_1678834_1679509_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|256aa|down_0|NC_017174.1_1679796_1680564_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|646aa|down_1|NC_017174.1_1680550_1682488_+	pfam02687, FtsX, FtsX-like permease family	NA|538aa|down_2|NC_017174.1_1682719_1684333_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|284aa|down_3|NC_017174.1_1684460_1685312_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|298aa|down_4|NC_017174.1_1685937_1686831_+	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA|465aa|down_5|NC_017174.1_1686830_1688225_+	PRK12831, PRK12831, putative oxidoreductase; Provisional	NA|740aa|down_6|NC_017174.1_1688589_1690809_+	cd01948, EAL, EAL domain	NA|249aa|down_7|NC_017174.1_1690961_1691708_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|down_8|NC_017174.1_1691707_1693588_+	pfam02687, FtsX, FtsX-like permease family	NA|464aa|down_9|NC_017174.1_1693706_1695098_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	7	1826292-1827440	3,7,2	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	17,17,17	17	TypeV	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA|96aa|down_0|NC_017174.1_1828010_1828298_+,NA|59aa|down_4|NC_017174.1_1833816_1833993_-,NA|341aa|down_5|NC_017174.1_1835041_1836064_+,NA|258aa|down_7|NC_017174.1_1836969_1837743_+	NA|316aa|up_9|NC_017174.1_1805005_1805953_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|200aa|up_8|NC_017174.1_1808466_1809066_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_7|NC_017174.1_1809168_1809966_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_6|NC_017174.1_1810275_1811262_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_5|NC_017174.1_1811745_1813476_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|825aa|up_4|NC_017174.1_1814758_1817233_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_3|NC_017174.1_1817232_1818690_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_2|NC_017174.1_1819107_1821465_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_1|NC_017174.1_1821549_1821867_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	cas14j|373aa|up_0|NC_017174.1_1822969_1824088_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|96aa|down_0|NC_017174.1_1828010_1828298_+	NA	NA|184aa|down_1|NC_017174.1_1828832_1829384_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NC_017174.1_1829574_1830537_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|616aa|down_3|NC_017174.1_1830817_1832665_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|59aa|down_4|NC_017174.1_1833816_1833993_-	NA	NA|341aa|down_5|NC_017174.1_1835041_1836064_+	NA	NA|296aa|down_6|NC_017174.1_1836076_1836964_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_7|NC_017174.1_1836969_1837743_+	NA	NA|242aa|down_8|NC_017174.1_1837854_1838580_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|down_9|NC_017174.1_1838583_1839987_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	8	2152896-2155826	8,3,4	CRISPRCasFinder,CRT,PILER-CR	no	csa3	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Type I-A	CTTTACATACCACATAGTTAATATAAAAC,CTTTACATACCACATAGTTAATATAAAAC,GTTTTATATTAACTATGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	44,44,43	44	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|95aa|up_8|NC_017174.1_2146848_2147133_-,NA|86aa|up_7|NC_017174.1_2147455_2147713_-,NA|124aa|up_6|NC_017174.1_2147851_2148223_-,NA|65aa|up_4|NC_017174.1_2150223_2150418_-,NA|127aa|up_3|NC_017174.1_2150954_2151335_-,NA|86aa|up_2|NC_017174.1_2151327_2151585_-,NA|78aa|up_1|NC_017174.1_2151571_2151805_-,NA|51aa|down_0|NC_017174.1_2156104_2156257_-,NA|55aa|down_1|NC_017174.1_2159244_2159409_-,NA|20aa|down_4|NC_017174.1_2161840_2161900_+	NA|79aa|up_9|NC_017174.1_2146335_2146572_+	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional	NA|95aa|up_8|NC_017174.1_2146848_2147133_-	NA	NA|86aa|up_7|NC_017174.1_2147455_2147713_-	NA	NA|124aa|up_6|NC_017174.1_2147851_2148223_-	NA	NA|191aa|up_5|NC_017174.1_2148665_2149238_-	pfam10543, ORF6N, ORF6N domain	NA|65aa|up_4|NC_017174.1_2150223_2150418_-	NA	NA|127aa|up_3|NC_017174.1_2150954_2151335_-	NA	NA|86aa|up_2|NC_017174.1_2151327_2151585_-	NA	NA|78aa|up_1|NC_017174.1_2151571_2151805_-	NA	NA|63aa|up_0|NC_017174.1_2151992_2152181_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|51aa|down_0|NC_017174.1_2156104_2156257_-	NA	NA|55aa|down_1|NC_017174.1_2159244_2159409_-	NA	NA|214aa|down_2|NC_017174.1_2160531_2161173_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|98aa|down_3|NC_017174.1_2161153_2161447_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|20aa|down_4|NC_017174.1_2161840_2161900_+	NA	NA|552aa|down_5|NC_017174.1_2163229_2164885_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|121aa|down_6|NC_017174.1_2164896_2165259_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|123aa|down_7|NC_017174.1_2165573_2165942_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|265aa|down_8|NC_017174.1_2166090_2166885_+	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|143aa|down_9|NC_017174.1_2167037_2167466_-	TIGR01753, Probable_flavodoxin-1, flavodoxin, short chain
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	9	2220611-2221499	9,4,5	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,13,12	13	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|51aa|up_5|NC_017174.1_2217036_2217189_+,NA|48aa|up_4|NC_017174.1_2217395_2217539_-,NA|58aa|up_1|NC_017174.1_2218528_2218702_+,NA|95aa|up_0|NC_017174.1_2219610_2219895_-,NA|206aa|down_8|NC_017174.1_2229916_2230534_-,NA|567aa|down_9|NC_017174.1_2230703_2232404_-	NA|256aa|up_9|NC_017174.1_2213279_2214047_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_8|NC_017174.1_2214339_2214813_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_7|NC_017174.1_2215193_2215751_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_6|NC_017174.1_2216008_2216707_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|51aa|up_5|NC_017174.1_2217036_2217189_+	NA	NA|48aa|up_4|NC_017174.1_2217395_2217539_-	NA	NA|156aa|up_3|NC_017174.1_2217692_2218160_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_2|NC_017174.1_2218170_2218386_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|58aa|up_1|NC_017174.1_2218528_2218702_+	NA	NA|95aa|up_0|NC_017174.1_2219610_2219895_-	NA	NA|62aa|down_0|NC_017174.1_2221796_2221982_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|291aa|down_1|NC_017174.1_2222134_2223007_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_2|NC_017174.1_2223400_2223979_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_3|NC_017174.1_2224035_2224752_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_4|NC_017174.1_2224942_2226028_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|225aa|down_5|NC_017174.1_2226181_2226856_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_6|NC_017174.1_2227052_2228345_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_7|NC_017174.1_2228362_2229556_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|206aa|down_8|NC_017174.1_2229916_2230534_-	NA	NA|567aa|down_9|NC_017174.1_2230703_2232404_-	NA
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	10	2331600-2334132	10,5,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Type I-B	ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC	30,30,30	0	0	NA	NA	III-B:III-B:III-B	38,38,37	38	TypeI-B	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|75aa|up_9|NC_017174.1_2321828_2322053_-,NA|275aa|up_7|NC_017174.1_2323847_2324672_-,NA|194aa|down_4|NC_017174.1_2342257_2342839_+,NA|58aa|down_8|NC_017174.1_2345653_2345827_-	NA|75aa|up_9|NC_017174.1_2321828_2322053_-	NA	NA|375aa|up_8|NC_017174.1_2322249_2323374_+	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|275aa|up_7|NC_017174.1_2323847_2324672_-	NA	NA|352aa|up_6|NC_017174.1_2325020_2326076_-	pfam04551, GcpE, GcpE protein	NA|335aa|up_5|NC_017174.1_2326258_2327263_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|385aa|up_4|NC_017174.1_2327275_2328430_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|68aa|up_3|NC_017174.1_2328593_2328797_-	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	cas2|97aa|up_2|NC_017174.1_2329486_2329777_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|333aa|up_1|NC_017174.1_2329987_2330986_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|165aa|up_0|NC_017174.1_2331020_2331515_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|853aa|down_0|NC_017174.1_2334321_2336880_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas5|247aa|down_1|NC_017174.1_2336903_2337644_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|330aa|down_2|NC_017174.1_2337645_2338635_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|587aa|down_3|NC_017174.1_2338627_2340388_-	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	NA|194aa|down_4|NC_017174.1_2342257_2342839_+	NA	NA|607aa|down_5|NC_017174.1_2342923_2344744_-	cd01948, EAL, EAL domain	NA|33aa|down_6|NC_017174.1_2344941_2345040_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|48aa|down_7|NC_017174.1_2345129_2345273_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|58aa|down_8|NC_017174.1_2345653_2345827_-	NA	NA|260aa|down_9|NC_017174.1_2345801_2346581_-	pfam01148, CTP_transf_1, Cytidylyltransferase family
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	11	3064297-3064605	11	CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATATA	26	0	0	NA	NA	NA	4	4	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA|222aa|down_0|NC_017174.1_3065898_3066564_+	NA|205aa|up_9|NC_017174.1_3052462_3053077_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NC_017174.1_3053091_3053541_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NC_017174.1_3053565_3055773_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NC_017174.1_3055846_3056359_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NC_017174.1_3056371_3058822_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NC_017174.1_3058834_3060499_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NC_017174.1_3060796_3061294_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NC_017174.1_3061322_3062702_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NC_017174.1_3063001_3063148_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NC_017174.1_3063177_3063756_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NC_017174.1_3065898_3066564_+	NA	NA|571aa|down_1|NC_017174.1_3067355_3069068_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_2|NC_017174.1_3069420_3069681_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_3|NC_017174.1_3069872_3071084_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_4|NC_017174.1_3071315_3073049_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_5|NC_017174.1_3073088_3073487_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_6|NC_017174.1_3073489_3075037_-	cd01948, EAL, EAL domain	NA|302aa|down_7|NC_017174.1_3075348_3076254_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_8|NC_017174.1_3076296_3076941_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|157aa|down_9|NC_017174.1_3077079_3077550_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	12	3064777-3065001	12	CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATATA	26	0	0	NA	NA	NA	3	3	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA|222aa|down_0|NC_017174.1_3065898_3066564_+	NA|205aa|up_9|NC_017174.1_3052462_3053077_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NC_017174.1_3053091_3053541_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NC_017174.1_3053565_3055773_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NC_017174.1_3055846_3056359_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NC_017174.1_3056371_3058822_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NC_017174.1_3058834_3060499_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NC_017174.1_3060796_3061294_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NC_017174.1_3061322_3062702_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NC_017174.1_3063001_3063148_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NC_017174.1_3063177_3063756_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NC_017174.1_3065898_3066564_+	NA	NA|571aa|down_1|NC_017174.1_3067355_3069068_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_2|NC_017174.1_3069420_3069681_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_3|NC_017174.1_3069872_3071084_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_4|NC_017174.1_3071315_3073049_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_5|NC_017174.1_3073088_3073487_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_6|NC_017174.1_3073489_3075037_-	cd01948, EAL, EAL domain	NA|302aa|down_7|NC_017174.1_3075348_3076254_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_8|NC_017174.1_3076296_3076941_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|157aa|down_9|NC_017174.1_3077079_3077550_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	13	3065203-3065294	13	CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATATA	26	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA|222aa|down_0|NC_017174.1_3065898_3066564_+	NA|205aa|up_9|NC_017174.1_3052462_3053077_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NC_017174.1_3053091_3053541_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NC_017174.1_3053565_3055773_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NC_017174.1_3055846_3056359_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NC_017174.1_3056371_3058822_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NC_017174.1_3058834_3060499_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NC_017174.1_3060796_3061294_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NC_017174.1_3061322_3062702_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NC_017174.1_3063001_3063148_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NC_017174.1_3063177_3063756_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NC_017174.1_3065898_3066564_+	NA	NA|571aa|down_1|NC_017174.1_3067355_3069068_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_2|NC_017174.1_3069420_3069681_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_3|NC_017174.1_3069872_3071084_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_4|NC_017174.1_3071315_3073049_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_5|NC_017174.1_3073088_3073487_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_6|NC_017174.1_3073489_3075037_-	cd01948, EAL, EAL domain	NA|302aa|down_7|NC_017174.1_3075348_3076254_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_8|NC_017174.1_3076296_3076941_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|157aa|down_9|NC_017174.1_3077079_3077550_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	14	3266657-3268778	14,6,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Unclear	CTTTACATACCACTTAGTTAATATAAAAC,CTTTACATACCACTTAGTTAATATAAAAC,TTTTATATTAACTAAGTGGTATGTAAAG	29,29,28	0	0	NA	NA	I-A:I-A:I-A	32,32,31	32	Unclear	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA|67aa|up_7|NC_017174.1_3259563_3259764_+,NA|257aa|up_2|NC_017174.1_3264934_3265705_+,NA|56aa|up_1|NC_017174.1_3265864_3266032_-,NA	NA|740aa|up_9|NC_017174.1_3253910_3256130_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NC_017174.1_3256405_3259060_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NC_017174.1_3259563_3259764_+	NA	NA|197aa|up_6|NC_017174.1_3259970_3260561_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NC_017174.1_3260563_3261439_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|379aa|up_4|NC_017174.1_3262908_3264045_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_3|NC_017174.1_3264065_3264611_-	pfam02632, BioY, BioY family	NA|257aa|up_2|NC_017174.1_3264934_3265705_+	NA	NA|56aa|up_1|NC_017174.1_3265864_3266032_-	NA	NA|143aa|up_0|NC_017174.1_3266167_3266596_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NC_017174.1_3268961_3269228_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NC_017174.1_3269230_3270211_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|184aa|down_2|NC_017174.1_3270213_3270765_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NC_017174.1_3270779_3273101_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NC_017174.1_3273111_3273813_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NC_017174.1_3273814_3274729_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|NC_017174.1_3274730_3276581_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|NC_017174.1_3276586_3277324_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NC_017174.1_3277401_3278319_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NC_017174.1_3278597_3280514_-	pfam02687, FtsX, FtsX-like permease family
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	15	3592159-3593344	7	CRT	no		cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Orphan	CCNGTTGNNCCNGTTNNTCCNGTTG	25	0	0	NA	NA	NA	20	20	Orphan	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA|46aa|down_3|NC_017174.1_3598141_3598279_-	NA|82aa|up_9|NC_017174.1_3580738_3580984_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|NC_017174.1_3581114_3582233_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|NC_017174.1_3582437_3583631_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|NC_017174.1_3583953_3584835_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|NC_017174.1_3585264_3586266_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|NC_017174.1_3586382_3587270_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|NC_017174.1_3587337_3588087_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|NC_017174.1_3588268_3588985_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|NC_017174.1_3589267_3590257_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|NC_017174.1_3590699_3591455_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|180aa|down_0|NC_017174.1_3593770_3594310_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|down_1|NC_017174.1_3594638_3595946_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|592aa|down_2|NC_017174.1_3596369_3598145_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|46aa|down_3|NC_017174.1_3598141_3598279_-	NA	NA|190aa|down_4|NC_017174.1_3598356_3598926_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_5|NC_017174.1_3599109_3599745_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_6|NC_017174.1_3600410_3601292_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_7|NC_017174.1_3601411_3602419_-	PRK13969, PRK13969, proline racemase; Provisional	NA|161aa|down_8|NC_017174.1_3602438_3602921_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein	NA|156aa|down_9|NC_017174.1_3602937_3603405_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein
GCF_000210435.1_ASM21043v1	NC_017174	Clostridioides difficile M120, complete genome	16	3709566-3710175	8	CRT	no	cas14j	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	Unclear	CCTGTTGNNCCTGTTNNNCC	20	0	0	NA	NA	NA	11	11	TypeV	cas14j,csa3,WYL,cas3,DEDDh,DinG,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas7,cas6,cas8b2	NA,NA	NA|184aa|up_9|NC_017174.1_3697679_3698231_-	cd10554, HycB_like, HycB, HydN and similar proteins	NA|278aa|up_8|NC_017174.1_3698451_3699285_-	pfam02634, FdhD-NarQ, FdhD/NarQ family	NA|715aa|up_7|NC_017174.1_3699333_3701478_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|353aa|up_6|NC_017174.1_3701728_3702787_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|220aa|up_5|NC_017174.1_3702997_3703657_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|210aa|up_4|NC_017174.1_3703966_3704596_+	pfam12654, DUF3786, Domain of unknown function (DUF3786)	cas14j|373aa|up_3|NC_017174.1_3704894_3706013_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|192aa|up_2|NC_017174.1_3706662_3707238_-	pfam06353, DUF1062, Protein of unknown function (DUF1062)	NA|93aa|up_1|NC_017174.1_3707532_3707811_-	pfam08765, Mor, Mor transcription activator family	NA|254aa|up_0|NC_017174.1_3708115_3708877_-	COG1600, COG1600, Uncharacterized Fe-S protein [Energy production and conversion]	NA|359aa|down_0|NC_017174.1_3711159_3712236_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|195aa|down_1|NC_017174.1_3712538_3713123_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|153aa|down_2|NC_017174.1_3713119_3713578_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|472aa|down_3|NC_017174.1_3713800_3715216_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|223aa|down_4|NC_017174.1_3715330_3715999_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|173aa|down_5|NC_017174.1_3716189_3716708_-	cd20609, nitroreductase, nitroreductase family protein	NA|108aa|down_6|NC_017174.1_3716859_3717183_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|109aa|down_7|NC_017174.1_3717187_3717514_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|513aa|down_8|NC_017174.1_3718795_3720334_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|238aa|down_9|NC_017174.1_3720610_3721324_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
