assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000209675.1_ASM20967v1	NC_015460	Gallibacterium anatis UMN179, complete sequence	1	1724985-1725071	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas14j,PD-DExK,RT,cas14i,DinG,csa3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f	Orphan	ATCAATGCAAGGCGCAGCCGCAGTAAAATG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas14j,PD-DExK,RT,cas14i,DinG,csa3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f	NA,NA	NA|365aa|up_9|NC_015460.1_1713145_1714240_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|110aa|up_8|NC_015460.1_1714413_1714743_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|99aa|up_7|NC_015460.1_1714824_1715121_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|325aa|up_6|NC_015460.1_1715149_1716124_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|1013aa|up_5|NC_015460.1_1716450_1719489_+	PRK09525, lacZ, beta-galactosidase	NA|240aa|up_4|NC_015460.1_1719701_1720421_+	pfam06149, DUF969, Protein of unknown function (DUF969)	NA|328aa|up_3|NC_015460.1_1720420_1721404_+	pfam06166, DUF979, Protein of unknown function (DUF979)	NA|331aa|up_2|NC_015460.1_1721413_1722406_+	pfam11199, DUF2891, Protein of unknown function (DUF2891)	NA|239aa|up_1|NC_015460.1_1722816_1723533_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|248aa|up_0|NC_015460.1_1723535_1724279_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|101aa|down_0|NC_015460.1_1725167_1725470_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|128aa|down_1|NC_015460.1_1725462_1725846_-	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system	NA|93aa|down_2|NC_015460.1_1726045_1726324_+	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|99aa|down_3|NC_015460.1_1726334_1726631_+	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|64aa|down_4|NC_015460.1_1727217_1727409_-	cd11586, VbhA_like, VbhA antitoxin and related proteins	NA|460aa|down_5|NC_015460.1_1728090_1729470_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|171aa|down_6|NC_015460.1_1729609_1730122_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|3598aa|down_7|NC_015460.1_1730226_1741020_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|160aa|down_8|NC_015460.1_1741261_1741741_-	pfam02316, HTH_Tnp_Mu_1, Mu DNA-binding domain	NA|76aa|down_9|NC_015460.1_1741953_1742181_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding
GCF_000209675.1_ASM20967v1	NC_015460	Gallibacterium anatis UMN179, complete sequence	2	2475223-2477447	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	cas3,DEDDh,WYL,cas14j,PD-DExK,RT,cas14i,DinG,csa3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f	Type III-C,Type III-D,Type III-A,Type III-B	GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC,GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC,GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	31,31,27	31	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	cas3,DEDDh,WYL,cas14j,PD-DExK,RT,cas14i,DinG,csa3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f	NA,NA|51aa|down_0|NC_015460.1_2477593_2477746_+,NA|85aa|down_1|NC_015460.1_2477754_2478009_+	NA|179aa|up_9|NC_015460.1_2467367_2467904_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|97aa|up_8|NC_015460.1_2468048_2468339_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	csm5gr7|443aa|up_7|NC_015460.1_2468403_2469732_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas6|305aa|up_6|NC_015460.1_2469731_2470646_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	csx16|97aa|up_5|NC_015460.1_2470721_2471012_+	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|385aa|up_4|NC_015460.1_2471031_2472186_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx1|385aa|up_3|NC_015460.1_2472187_2473342_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas2|93aa|up_2|NC_015460.1_2473528_2473807_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|337aa|up_1|NC_015460.1_2473816_2474827_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|up_0|NC_015460.1_2474829_2475114_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|51aa|down_0|NC_015460.1_2477593_2477746_+	NA	NA|85aa|down_1|NC_015460.1_2477754_2478009_+	NA	NA|197aa|down_2|NC_015460.1_2478064_2478655_-	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|307aa|down_3|NC_015460.1_2478835_2479756_+	PRK02231, ppnK, NAD(+) kinase	NA|559aa|down_4|NC_015460.1_2479826_2481503_+	PRK10869, PRK10869, recombination and repair protein; Provisional	NA|557aa|down_5|NC_015460.1_2481873_2483544_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|393aa|down_6|NC_015460.1_2483815_2484994_+	pfam13535, ATP-grasp_4, ATP-grasp domain	NA|251aa|down_7|NC_015460.1_2485011_2485764_+	COG4947, COG4947, Uncharacterized protein conserved in bacteria [Function unknown]	NA|672aa|down_8|NC_015460.1_2486071_2488087_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|150aa|down_9|NC_015460.1_2488162_2488612_+	TIGR02805, Biopolymer_transport_protein_ExbB, tonB-system energizer ExbB, group 2
GCF_000209675.1_ASM20967v1	NC_015460	Gallibacterium anatis UMN179, complete sequence	3	2519248-2519754	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3-cas2,cas6f,cas7f,cas5f,cas8f	cas3,DEDDh,WYL,cas14j,PD-DExK,RT,cas14i,DinG,csa3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f	Type I-F	TTTCTAAGCTGCCTATGCGGCAGTGAAG,TTTCTAAGCTGCCTATGCGGCAGTGAAG,TTTCTAAGCTGCCTATGCGGCAGTGAAG	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,8,7	8	TypeI-F	cas3,DEDDh,WYL,cas14j,PD-DExK,RT,cas14i,DinG,csa3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f	NA,NA	NA|352aa|up_9|NC_015460.1_2505042_2506098_+	COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|254aa|up_8|NC_015460.1_2506102_2506864_+	COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|309aa|up_7|NC_015460.1_2506906_2507833_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|182aa|up_6|NC_015460.1_2508033_2508579_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|602aa|up_5|NC_015460.1_2508716_2510522_-	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]	NA|283aa|up_4|NC_015460.1_2510691_2511540_+	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|321aa|up_3|NC_015460.1_2511575_2512538_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|585aa|up_2|NC_015460.1_2512599_2514354_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|581aa|up_1|NC_015460.1_2514364_2516107_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	cas3-cas2|1012aa|up_0|NC_015460.1_2516159_2519195_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas6f|190aa|down_0|NC_015460.1_2519891_2520461_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|334aa|down_1|NC_015460.1_2520466_2521468_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|336aa|down_2|NC_015460.1_2521464_2522472_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|435aa|down_3|NC_015460.1_2522480_2523785_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	NA|431aa|down_4|NC_015460.1_2524138_2525431_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|down_5|NC_015460.1_2525475_2525814_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|268aa|down_6|NC_015460.1_2526125_2526929_+	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|397aa|down_7|NC_015460.1_2527002_2528193_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|74aa|down_8|NC_015460.1_2528671_2528893_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|271aa|down_9|NC_015460.1_2529469_2530282_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
