The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015458	Pusillimonas sp. T7-7, complete sequence	3883605	822385	829961	3883605	protease	Agrobacterium_phage(16.67%)	7	NA	NA
WP_013741808.1|822385_823042_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.2	3.1e-56
WP_013741809.1|823133_824441_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	55.2	1.3e-127
WP_013741810.1|824592_827067_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	51.5	4.8e-219
WP_013741812.1|827685_828078_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0D4DCG1	Acinetobacter_phage	44.4	1.5e-21
WP_013741813.1|828088_828271_-	type II toxin-antitoxin system HicA family toxin	NA	D6R431	Bacillus_phage	48.3	3.7e-12
WP_013741814.1|828478_829177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013741815.1|829298_829961_-	transcriptional repressor LexA	NA	A0A2K9V3G4	Faecalibacterium_phage	44.8	1.7e-17
>prophage 2
NC_015458	Pusillimonas sp. T7-7, complete sequence	3883605	958695	1003383	3883605	transposase,integrase	Stx2-converting_phage(40.0%)	43	955755:955770	1006941:1006956
955755:955770	attL	CGATGATGATGGCGCC	NA	NA	NA	NA
WP_013741927.1|958695_959898_+|integrase	site-specific integrase	integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	52.4	7.2e-112
WP_013741928.1|959926_960217_-	AlpA family phage regulatory protein	NA	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	43.6	1.3e-06
WP_041682539.1|961194_961431_+	helix-turn-helix domain-containing protein	NA	A0A0N7IRE1	Acinetobacter_phage	42.2	3.3e-05
WP_013741929.1|961593_962547_-	alpha/beta hydrolase	NA	A0A0B5A484	Mycobacterium_phage	25.6	3.0e-12
WP_041682540.1|962654_963059_-	OsmC family protein	NA	NA	NA	NA	NA
WP_083812409.1|963339_964638_-	porin	NA	NA	NA	NA	NA
WP_049790262.1|964701_965028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041682541.1|965165_965534_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_013741934.1|965880_967194_+	MFS transporter	NA	NA	NA	NA	NA
WP_158306417.1|967194_970128_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_049790264.1|970720_971290_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013741939.1|971428_971833_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_148255883.1|971944_974938_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013741941.1|975209_975893_+	hydrolase	NA	NA	NA	NA	NA
WP_013741942.1|975972_976248_+	XapX domain-containing protein	NA	NA	NA	NA	NA
WP_013741943.1|976322_978218_+	amidohydrolase	NA	NA	NA	NA	NA
WP_041682993.1|978234_978669_+	DoxX family protein	NA	NA	NA	NA	NA
WP_013741946.1|978712_979324_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA	NA
WP_158306418.1|979903_980302_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013741949.1|980298_980643_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	69.2	9.4e-41
WP_148255885.1|980734_982309_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	49.0	2.0e-138
WP_013741951.1|982327_982699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148255992.1|982803_984357_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	56.5	1.9e-141
WP_013741953.1|984487_984832_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	68.2	3.6e-40
WP_049790266.1|984828_985266_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_148255993.1|986294_987155_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013741957.1|987943_988570_+	hydrolase	NA	NA	NA	NA	NA
WP_013741958.1|988660_988957_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_013741959.1|989103_989409_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_049790267.1|989392_989815_+	DoxX family protein	NA	NA	NA	NA	NA
WP_013741962.1|990004_991591_+	MFS transporter	NA	NA	NA	NA	NA
WP_013741964.1|991743_992634_+	pirin family protein	NA	NA	NA	NA	NA
WP_013741965.1|992687_993428_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	35.0	4.0e-20
WP_013741966.1|993511_993913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041682546.1|993980_994997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013741968.1|995033_997085_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	31.8	2.6e-53
WP_013741969.1|997145_998276_+	MFS transporter	NA	NA	NA	NA	NA
WP_013741970.1|998503_999445_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013741971.1|999743_1000112_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_013741972.1|1000317_1000707_+	RidA family protein	NA	NA	NA	NA	NA
WP_013741973.1|1000831_1001839_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013741974.1|1001969_1002917_+	alkene reductase	NA	NA	NA	NA	NA
WP_049790266.1|1002945_1003383_+|transposase	transposase	transposase	NA	NA	NA	NA
1006941:1006956	attR	CGATGATGATGGCGCC	NA	NA	NA	NA
>prophage 3
NC_015458	Pusillimonas sp. T7-7, complete sequence	3883605	1066454	1074109	3883605	tRNA	Moraxella_phage(28.57%)	8	NA	NA
WP_013742039.1|1066454_1068056_+	ABC-F family ATPase	NA	A0A2K9L3Z8	Tupanvirus	27.1	4.8e-55
WP_013742040.1|1068074_1068677_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	36.3	1.7e-21
WP_013742041.1|1068745_1069126_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	45.1	5.4e-13
WP_013742042.1|1069255_1070548_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	38.5	3.9e-71
WP_013742043.1|1070698_1071763_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	53.8	3.4e-97
WP_013742044.1|1071798_1072437_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_013742045.1|1072547_1073306_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.0	5.2e-68
WP_013742046.1|1073290_1074109_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.2	5.0e-32
>prophage 4
NC_015458	Pusillimonas sp. T7-7, complete sequence	3883605	1197670	1206419	3883605		uncultured_Caudovirales_phage(83.33%)	9	NA	NA
WP_013742164.1|1197670_1198957_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.6	1.1e-166
WP_041682567.1|1199052_1199532_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	51.3	5.2e-37
WP_013742166.1|1199627_1200149_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	39.4	6.4e-25
WP_013742167.1|1200204_1200546_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013742168.1|1200607_1201366_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	70.6	2.3e-92
WP_013742169.1|1201457_1203125_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.4	4.5e-11
WP_041682568.1|1203139_1203415_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA	NA
WP_013742171.1|1203482_1204412_+	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA	NA
WP_013742172.1|1205012_1206419_-	Cu(+)/Ag(+) sensor histidine kinase	NA	W8CYF6	Bacillus_phage	29.9	1.7e-24
>prophage 5
NC_015458	Pusillimonas sp. T7-7, complete sequence	3883605	2608883	2635573	3883605	tRNA,transposase,integrase	Escherichia_phage(11.11%)	26	2630479:2630494	2637189:2637204
WP_013743514.1|2608883_2609855_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	67.7	3.0e-100
WP_148255931.1|2609950_2612269_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_013743516.1|2612318_2612891_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_013743517.1|2612887_2613214_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_041683265.1|2613257_2614079_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_041682722.1|2614107_2615187_-	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	38.5	2.5e-07
WP_041682723.1|2615256_2616531_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_013743521.1|2616958_2618266_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	37.7	3.6e-64
WP_013743522.1|2618281_2618422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013743523.1|2618500_2620063_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	48.7	2.8e-124
WP_013743524.1|2620478_2622005_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_013743525.1|2622333_2623593_-	MFS transporter	NA	NA	NA	NA	NA
WP_041682724.1|2623615_2623957_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_013743527.1|2623980_2625021_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_013743528.1|2625045_2626059_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.8	3.5e-43
WP_013743529.1|2626070_2626970_-	acetaldehyde dehydrogenase (acetylating)	NA	G8DDL4	Micromonas_pusilla_virus	36.2	5.7e-37
WP_148256039.1|2627048_2628293_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_041683268.1|2628368_2628884_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_013743532.1|2629050_2630244_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_148255932.1|2630290_2630740_-	hypothetical protein	NA	NA	NA	NA	NA
2630479:2630494	attL	CGATCTGCTCGATCTC	NA	NA	NA	NA
WP_013743534.1|2630751_2631984_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	S4S2K9	Puniceispirillum_phage	33.7	3.5e-53
WP_013743535.1|2632051_2632963_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_158306429.1|2634275_2634494_-|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	42.3	9.2e-10
WP_158306430.1|2634621_2634843_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	50.8	3.1e-13
WP_158306431.1|2634996_2635110_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013743538.1|2635249_2635573_-|transposase	transposase	transposase	NA	NA	NA	NA
2637189:2637204	attR	CGATCTGCTCGATCTC	NA	NA	NA	NA
>prophage 6
NC_015458	Pusillimonas sp. T7-7, complete sequence	3883605	2995071	3010425	3883605	transposase,integrase	uncultured_virus(66.67%)	10	3004912:3004926	3013663:3013677
WP_148256050.1|2995071_2996556_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_041682767.1|2998211_2999729_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_083812509.1|3000076_3001453_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	30.8	2.2e-40
WP_013743906.1|3001633_3002077_+|transposase	transposase	transposase	A0A218MNG9	uncultured_virus	53.3	2.2e-05
WP_013743907.1|3002073_3002406_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_013743908.1|3002484_3004089_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	49.3	4.7e-127
3004912:3004926	attL	GATAGCGCCTCAAAA	NA	NA	NA	NA
WP_041682769.1|3005143_3005572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013743910.1|3005608_3007618_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_013743911.1|3007610_3009152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013743912.1|3009144_3010425_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3013663:3013677	attR	TTTTGAGGCGCTATC	NA	NA	NA	NA
>prophage 1
NC_015459	Pusillimonas sp. T7-7 plasmid unnamed, complete sequence	41205	4492	34085	41205	tail,terminase,head,protease,integrase,portal,capsid	Pseudomonas_phage(12.0%)	43	3323:3337	38200:38214
3323:3337	attL	CCGGCCCGGCCAGCC	NA	NA	NA	NA
WP_013744763.1|4492_5569_+	hypothetical protein	NA	Q9MC69	Pseudomonas_phage	40.6	1.2e-28
WP_148256083.1|5594_6323_+	ERF family protein	NA	B5WZW4	Pseudomonas_phage	77.6	3.0e-68
WP_013744765.1|6322_6958_+	YqaJ viral recombinase family protein	NA	F8TUK8	EBPR_podovirus	34.7	2.4e-18
WP_013744766.1|6957_7377_+	single-stranded DNA-binding protein	NA	W8EK97	Geobacillus_phage	32.7	2.0e-08
WP_013744768.1|7668_7827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744769.1|7805_8147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744770.1|8130_8373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744771.1|8369_8663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744772.1|8659_8911_+	hypothetical protein	NA	F8TVH0	EBPR_siphovirus	47.1	1.4e-14
WP_013744773.1|8907_9414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744774.1|9406_9934_+	HNH endonuclease	NA	A0A2R3UAC5	Siphoviridae_environmental_samples	41.1	7.7e-26
WP_013744775.1|9930_10608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148256077.1|10604_10823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744777.1|10911_11151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744779.1|11338_12322_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.1	1.7e-71
WP_013744780.1|12387_12690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013744782.1|12810_13056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041683491.1|13052_13523_-	lysozyme	NA	A0A088FRS5	Escherichia_phage	50.6	1.8e-34
WP_013744784.1|13621_13831_-	hypothetical protein	NA	A0A2P9HXL2	Yersinia_phage	58.0	5.4e-15
WP_013744785.1|13970_14639_+	GIY-YIG nuclease family protein	NA	M1HHX3	Paramecium_bursaria_Chlorella_virus	39.3	4.0e-11
WP_013744786.1|14687_15140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013744787.1|15207_15654_-	hypothetical protein	NA	A0A0K0KVS2	Prochlorococcus_phage	58.3	8.3e-05
WP_013744788.1|15656_16700_-	hypothetical protein	NA	F5B3N8	Synechococcus_phage	29.1	4.2e-07
WP_083812513.1|16753_20620_-	hypothetical protein	NA	Q2NPH0	Xanthomonas_virus	24.3	3.0e-58
WP_041683493.1|20699_21086_-	hypothetical protein	NA	Q2NPH1	Xanthomonas_virus	37.4	2.8e-17
WP_013744792.1|21244_21712_-	DUF1833 family protein	NA	NA	NA	NA	NA
WP_013744793.1|21708_22056_-	hypothetical protein	NA	A5H1M2	Xanthomonas_virus	36.8	5.1e-10
WP_049790444.1|22055_24083_-	hypothetical protein	NA	A0A0U4JEA4	Pseudomonas_phage	54.8	4.4e-53
WP_193383962.1|24515_24773_-	DUF4035 domain-containing protein	NA	NA	NA	NA	NA
WP_013744798.1|24793_25090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148256078.1|25099_25666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013744800.1|25814_26159_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_013744801.1|26155_26899_-	hypothetical protein	NA	A0A1P8DIK4	Virus_Rctr197k	26.1	5.4e-17
WP_013744802.1|26982_27420_-	HK97 gp10 family phage protein	NA	Q6JIM3	Burkholderia_virus	43.9	9.8e-19
WP_013744803.1|27416_27743_-|head	phage head closure protein	head	A0A1J0GUY4	Halomonas_phage	47.3	9.0e-17
WP_013744804.1|27742_28162_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_013744805.1|28162_28333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013744806.1|28385_29600_-|capsid	phage major capsid protein	capsid	C7BGH0	Burkholderia_phage	46.5	3.6e-95
WP_013744807.1|29662_30385_-|protease	Clp protease ClpP	protease	C7BGG9	Burkholderia_phage	55.6	2.0e-53
WP_013744808.1|30350_31646_-|portal	phage portal protein	portal	C7BGG8	Burkholderia_phage	36.6	6.2e-61
WP_049790446.1|31645_33154_-|terminase	terminase	terminase	F1C585	Cronobacter_phage	67.4	7.2e-186
WP_013744810.1|33165_33639_-	hypothetical protein	NA	A0A0F7L441	uncultured_marine_virus	51.7	2.4e-31
WP_013744811.1|33749_34085_-	HNH endonuclease	NA	A0A1X9I6D0	Streptococcus_phage	59.2	8.9e-20
38200:38214	attR	CCGGCCCGGCCAGCC	NA	NA	NA	NA
