assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	1	415338-415438	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|70aa|up_8|NC_017347.1_406910_407120_-,NA|128aa|up_6|NC_017347.1_407944_408328_-,NA|34aa|up_0|NC_017347.1_414562_414664_+,NA|221aa|down_1|NC_017347.1_416528_417191_-	NA|84aa|up_9|NC_017347.1_406620_406872_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NC_017347.1_406910_407120_-	NA	NA|194aa|up_7|NC_017347.1_407297_407879_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NC_017347.1_407944_408328_-	NA	NA|209aa|up_5|NC_017347.1_408582_409209_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NC_017347.1_409653_411177_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_017347.1_411192_411762_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_017347.1_412253_413009_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_017347.1_413089_414478_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NC_017347.1_414562_414664_+	NA	NA|319aa|down_0|NC_017347.1_415454_416411_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NC_017347.1_416528_417191_-	NA	NA|136aa|down_2|NC_017347.1_417333_417741_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_017347.1_418253_418832_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_017347.1_418831_420100_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_017347.1_420137_421604_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_017347.1_421628_423170_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NC_017347.1_423237_424431_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NC_017347.1_424457_424658_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NC_017347.1_425155_425386_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	2	677999-678091	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|NC_017347.1_674481_674589_+,NA|169aa|down_4|NC_017347.1_681838_682345_+,NA|239aa|down_5|NC_017347.1_682506_683223_+	NA|313aa|up_9|NC_017347.1_668683_669622_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NC_017347.1_669832_670369_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NC_017347.1_670537_671014_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NC_017347.1_671053_672349_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NC_017347.1_672376_672898_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NC_017347.1_673396_674407_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NC_017347.1_674481_674589_+	NA	NA|139aa|up_2|NC_017347.1_674681_675098_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NC_017347.1_675094_676756_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NC_017347.1_677145_677781_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NC_017347.1_678159_679047_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NC_017347.1_679194_680145_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NC_017347.1_680199_680919_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NC_017347.1_680902_681703_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NC_017347.1_681838_682345_+	NA	NA|239aa|down_5|NC_017347.1_682506_683223_+	NA	NA|391aa|down_6|NC_017347.1_683453_684626_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|263aa|down_7|NC_017347.1_684723_685512_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_8|NC_017347.1_685762_686137_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_9|NC_017347.1_687084_688014_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	3	795144-795226	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|NC_017347.1_781744_781951_+,NA|34aa|down_1|NC_017347.1_796682_796784_+,NA|52aa|down_8|NC_017347.1_804963_805119_+	NA|69aa|up_9|NC_017347.1_781744_781951_+	NA	NA|237aa|up_8|NC_017347.1_782038_782749_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_017347.1_782732_783737_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_017347.1_784210_786151_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_017347.1_786421_788305_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_017347.1_788316_790098_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_017347.1_790319_791297_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_017347.1_791289_792804_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_017347.1_793043_794102_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_017347.1_794452_794995_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_017347.1_795674_796592_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_017347.1_796682_796784_+	NA	NA|502aa|down_2|NC_017347.1_796861_798367_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_017347.1_798707_799208_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_017347.1_799227_800094_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_017347.1_800894_801293_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_017347.1_801255_803361_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_017347.1_803478_804450_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_017347.1_804963_805119_+	NA	NA|324aa|down_9|NC_017347.1_805157_806129_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	4	841649-841734	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	4	841679-841704|841679-841704|841679-841704|841679-841704	NC_017347.1_804641-804616|NC_017347.1_284015-283990|NC_017347.1_804697-804672|NC_017347.1_966455-966430	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|280aa|up_9|NC_017347.1_828901_829741_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NC_017347.1_829914_830565_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NC_017347.1_830561_830798_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NC_017347.1_831066_833052_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NC_017347.1_833059_835906_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NC_017347.1_836567_837500_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NC_017347.1_837505_838345_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NC_017347.1_838352_838838_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NC_017347.1_838845_840285_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NC_017347.1_840351_841287_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NC_017347.1_842166_843078_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NC_017347.1_843074_844070_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NC_017347.1_844179_845124_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NC_017347.1_845696_846284_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NC_017347.1_846526_847429_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NC_017347.1_848131_848761_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NC_017347.1_849403_850417_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NC_017347.1_850469_851480_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NC_017347.1_851618_852809_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NC_017347.1_852930_853692_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	5	901069-901150	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	901093-901126|901093-901126	NC_017347.1_1398516-1398483|NC_017347.1_1487669-1487702	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|144aa|down_8|NC_017347.1_908129_908561_-	NA|194aa|up_9|NC_017347.1_894173_894755_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_017347.1_894827_895445_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_017347.1_895599_896094_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_017347.1_896491_896914_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_017347.1_897061_897778_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_017347.1_897860_898400_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_017347.1_898549_898870_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_017347.1_899013_899370_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_017347.1_899527_899908_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_017347.1_900086_900965_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_017347.1_901650_902037_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_017347.1_902029_902326_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_017347.1_902575_903601_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_017347.1_903593_904289_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_017347.1_904306_905128_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NC_017347.1_905271_906492_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NC_017347.1_906579_907308_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NC_017347.1_907331_908060_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|144aa|down_8|NC_017347.1_908129_908561_-	NA	NA|153aa|down_9|NC_017347.1_908577_909036_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	6	966456-966738	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	3	6	966486-966511|966486-966511|966600-966625|966600-966625|966656-966708|966656-966708	NC_017347.1_966430-966455|NC_017347.1_804616-804641|NC_017347.1_841760-841735|NC_017347.1_361244-361269|NC_017347.1_248474-248526|NC_017347.1_2694139-2694087	NA	4	4	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NC_017347.1_955344_956841_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NC_017347.1_956833_957175_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NC_017347.1_957174_957603_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NC_017347.1_957595_960001_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NC_017347.1_960131_960515_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NC_017347.1_960578_961172_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NC_017347.1_961587_961965_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NC_017347.1_962326_963454_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NC_017347.1_963761_964952_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NC_017347.1_965060_966305_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|299aa|down_0|NC_017347.1_966807_967704_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NC_017347.1_967982_969362_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NC_017347.1_969351_970557_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NC_017347.1_970907_972239_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NC_017347.1_972563_973139_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NC_017347.1_973143_973668_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NC_017347.1_973683_974259_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NC_017347.1_974418_977895_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NC_017347.1_977895_981549_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NC_017347.1_981714_982617_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	7	1101806-1101893	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|45aa|down_0|NC_017347.1_1101902_1102037_-,NA|432aa|down_1|NC_017347.1_1102188_1103484_+	NA|224aa|up_9|NC_017347.1_1089596_1090268_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NC_017347.1_1090260_1092450_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NC_017347.1_1092428_1093913_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NC_017347.1_1093905_1094934_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NC_017347.1_1094936_1095503_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NC_017347.1_1095517_1096996_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NC_017347.1_1097017_1098265_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NC_017347.1_1098529_1099336_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NC_017347.1_1099328_1100729_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NC_017347.1_1100743_1101319_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NC_017347.1_1101902_1102037_-	NA	NA|432aa|down_1|NC_017347.1_1102188_1103484_+	NA	NA|391aa|down_2|NC_017347.1_1103908_1105081_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NC_017347.1_1105134_1105677_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NC_017347.1_1105830_1106097_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NC_017347.1_1106099_1107818_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NC_017347.1_1108054_1108288_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NC_017347.1_1108485_1109847_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NC_017347.1_1109843_1110863_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NC_017347.1_1110995_1111658_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	8	1188989-1189074	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	1189019-1189044|1189019-1189044|1189019-1189044|1189019-1189044	NC_017347.1_283990-284015|NC_017347.1_804672-804697|NC_017347.1_804616-804641|NC_017347.1_804728-804753	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_8|NC_017347.1_1181352_1181859_+,NA|62aa|up_5|NC_017347.1_1183940_1184126_-,NA|78aa|up_4|NC_017347.1_1184747_1184981_-,NA|49aa|up_1|NC_017347.1_1188421_1188568_+,NA|75aa|up_0|NC_017347.1_1188524_1188749_+,NA|76aa|down_6|NC_017347.1_1196048_1196276_+	NA|134aa|up_9|NC_017347.1_1180279_1180681_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NC_017347.1_1181352_1181859_+	NA	NA|166aa|up_7|NC_017347.1_1182117_1182615_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NC_017347.1_1182768_1183119_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NC_017347.1_1183940_1184126_-	NA	NA|78aa|up_4|NC_017347.1_1184747_1184981_-	NA	NA|320aa|up_3|NC_017347.1_1185457_1186417_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|up_2|NC_017347.1_1186832_1188005_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|up_1|NC_017347.1_1188421_1188568_+	NA	NA|75aa|up_0|NC_017347.1_1188524_1188749_+	NA	NA|239aa|down_0|NC_017347.1_1189249_1189966_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NC_017347.1_1190073_1190799_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NC_017347.1_1190893_1191619_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NC_017347.1_1192056_1193058_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NC_017347.1_1193080_1194013_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NC_017347.1_1194184_1195741_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NC_017347.1_1196048_1196276_+	NA	NA|316aa|down_7|NC_017347.1_1196580_1197528_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NC_017347.1_1197776_1197965_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NC_017347.1_1198876_1199011_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	9	1973553-1973669	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TATTAAATTATGGAGCGGAGATAGGATTT	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|132aa|up_8|NC_017347.1_1964055_1964451_-,NA|51aa|up_7|NC_017347.1_1965227_1965380_-,NA|31aa|down_5|NC_017347.1_1986147_1986240_-	NA|462aa|up_9|NC_017347.1_1962474_1963860_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_8|NC_017347.1_1964055_1964451_-	NA	NA|51aa|up_7|NC_017347.1_1965227_1965380_-	NA	NA|200aa|up_6|NC_017347.1_1965404_1966004_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_5|NC_017347.1_1966162_1966633_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_4|NC_017347.1_1966637_1967765_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|up_3|NC_017347.1_1967915_1968638_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_2|NC_017347.1_1968630_1970088_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_1|NC_017347.1_1970345_1971407_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|454aa|up_0|NC_017347.1_1971899_1973261_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|down_0|NC_017347.1_1981346_1981793_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NC_017347.1_1981889_1982840_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NC_017347.1_1982845_1983301_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NC_017347.1_1983381_1984671_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NC_017347.1_1984963_1986058_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_5|NC_017347.1_1986147_1986240_-	NA	NA|579aa|down_6|NC_017347.1_1986248_1987985_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_7|NC_017347.1_1988275_1988818_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_8|NC_017347.1_1989119_1990157_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|NC_017347.1_1990308_1991286_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	10	2007389-2007467	9	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,DinG,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2007412-2007444|2007412-2007444|2007412-2007444|2007412-2007444|2007412-2007444|2007412-2007444	NC_017347.1_841715-841747|NC_017347.1_1189008-1188976|NC_017347.1_1398470-1398438|NC_017347.1_1666850-1666882|NC_017347.1_2659885-2659917|NC_017347.1_1487715-1487747	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|92aa|up_6|NC_017347.1_2001583_2001859_+,NA|129aa|up_1|NC_017347.1_2005844_2006231_-,NA|138aa|down_1|NC_017347.1_2009150_2009564_-,NA|37aa|down_2|NC_017347.1_2009592_2009703_-,NA|31aa|down_6|NC_017347.1_2012708_2012801_-	NA|419aa|up_9|NC_017347.1_1999506_2000763_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NC_017347.1_2000765_2000966_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_017347.1_2001112_2001577_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NC_017347.1_2001583_2001859_+	NA	NA|406aa|up_5|NC_017347.1_2002136_2003354_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NC_017347.1_2003469_2004099_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NC_017347.1_2004088_2005132_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NC_017347.1_2005128_2005830_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NC_017347.1_2005844_2006231_-	NA	NA|253aa|up_0|NC_017347.1_2006447_2007206_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NC_017347.1_2007733_2008720_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NC_017347.1_2009150_2009564_-	NA	NA|37aa|down_2|NC_017347.1_2009592_2009703_-	NA	NA|244aa|down_3|NC_017347.1_2009788_2010520_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NC_017347.1_2010521_2011835_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NC_017347.1_2012126_2012627_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NC_017347.1_2012708_2012801_-	NA	DEDDh|185aa|down_7|NC_017347.1_2013015_2013570_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NC_017347.1_2013637_2014708_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NC_017347.1_2014954_2015485_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	11	2132099-2132187	10	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|95aa|up_8|NC_017347.1_2127518_2127803_-,NA|121aa|up_7|NC_017347.1_2127804_2128167_-,NA|70aa|up_3|NC_017347.1_2131195_2131405_-,NA|49aa|up_2|NC_017347.1_2131397_2131544_-,NA	NA|214aa|up_9|NC_017347.1_2126880_2127522_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|95aa|up_8|NC_017347.1_2127518_2127803_-	NA	NA|121aa|up_7|NC_017347.1_2127804_2128167_-	NA	NA|486aa|up_6|NC_017347.1_2128468_2129926_-	pfam05272, VirE, Virulence-associated protein E	NA|290aa|up_5|NC_017347.1_2129942_2130812_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|98aa|up_4|NC_017347.1_2130899_2131193_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NC_017347.1_2131195_2131405_-	NA	NA|49aa|up_2|NC_017347.1_2131397_2131544_-	NA	NA|106aa|up_1|NC_017347.1_2131540_2131858_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NC_017347.1_2131862_2132081_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NC_017347.1_2132253_2132928_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NC_017347.1_2132941_2134114_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NC_017347.1_2134182_2135799_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NC_017347.1_2135874_2136159_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NC_017347.1_2136333_2137077_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_5|NC_017347.1_2137100_2138360_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|209aa|down_6|NC_017347.1_2138556_2139183_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NC_017347.1_2139543_2140329_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NC_017347.1_2140925_2141060_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_9|NC_017347.1_2141295_2141865_+	smart00793, AgrB, Accessory gene regulator B
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	12	2260433-2260583	11	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|NC_017347.1_2255304_2255535_-,NA|364aa|up_0|NC_017347.1_2259323_2260415_+,NA|35aa|down_0|NC_017347.1_2260914_2261019_-,NA|31aa|down_2|NC_017347.1_2263130_2263223_+	NA|237aa|up_9|NC_017347.1_2250914_2251625_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_017347.1_2251745_2252189_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_017347.1_2252388_2252802_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_017347.1_2253259_2254633_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_017347.1_2255304_2255535_-	NA	NA|313aa|up_4|NC_017347.1_2255565_2256504_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_017347.1_2256938_2257604_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_017347.1_2257755_2258076_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_017347.1_2258077_2259058_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_017347.1_2259323_2260415_+	NA	NA|35aa|down_0|NC_017347.1_2260914_2261019_-	NA	NA|379aa|down_1|NC_017347.1_2261705_2262842_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NC_017347.1_2263130_2263223_+	NA	NA|391aa|down_3|NC_017347.1_2263417_2264590_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|286aa|down_4|NC_017347.1_2265259_2266117_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NC_017347.1_2266184_2266967_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NC_017347.1_2267198_2269004_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NC_017347.1_2269684_2271223_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NC_017347.1_2271257_2273390_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NC_017347.1_2273401_2273836_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	13	2387184-2387377	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	2387207-2387239|2387207-2387239|2387207-2387239|2387207-2387239|2387207-2387239|2387263-2387298|2387263-2387298|2387263-2387298|2387263-2387298|2387263-2387298|2387322-2387354|2387322-2387354|2387322-2387354|2387322-2387354	NC_017347.1_841715-841747|NC_017347.1_1189008-1188976|NC_017347.1_1398470-1398438|NC_017347.1_1487715-1487747|NC_017347.1_2659885-2659917|NC_017347.1_1188955-1188920|NC_017347.1_1852803-1852768|NC_017347.1_284150-284115|NC_017347.1_1666789-1666824|NC_017347.1_2018156-2018191|NC_017347.1_841715-841747|NC_017347.1_1189008-1188976|NC_017347.1_1398470-1398438|NC_017347.1_2659885-2659917	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|NC_017347.1_2377711_2377876_+,NA|106aa|up_8|NC_017347.1_2378120_2378438_+,NA|84aa|up_5|NC_017347.1_2383562_2383814_+,NA|57aa|up_0|NC_017347.1_2386953_2387124_+,NA	NA|55aa|up_9|NC_017347.1_2377711_2377876_+	NA	NA|106aa|up_8|NC_017347.1_2378120_2378438_+	NA	NA|1056aa|up_7|NC_017347.1_2378624_2381792_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_017347.1_2381908_2383174_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_017347.1_2383562_2383814_+	NA	NA|255aa|up_4|NC_017347.1_2383805_2384570_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_017347.1_2384731_2385172_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_017347.1_2385164_2386376_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_017347.1_2386477_2386828_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_017347.1_2386953_2387124_+	NA	NA|341aa|down_0|NC_017347.1_2387518_2388541_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_017347.1_2388560_2389160_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_017347.1_2389166_2389400_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_017347.1_2389405_2389852_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_017347.1_2389865_2390351_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_017347.1_2390347_2391607_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_017347.1_2391669_2392164_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_017347.1_2392165_2392672_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_017347.1_2392702_2393707_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_017347.1_2393875_2394481_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000204665.1_ASM20466v1	NC_017347	Staphylococcus aureus subsp. aureus T0131, complete sequence	14	2907706-2907789	12	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	4	2907732-2907763|2907732-2907763|2907732-2907763|2907732-2907763	NC_017347.1_841815-841846|NC_017347.1_841873-841904|NC_017347.1_1111766-1111797|NC_017347.1_1487759-1487790	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|64aa|up_7|NC_017347.1_2901657_2901849_+,NA|166aa|up_6|NC_017347.1_2902935_2903433_-,NA	NA|253aa|up_9|NC_017347.1_2898937_2899696_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|NC_017347.1_2899685_2901566_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|NC_017347.1_2901657_2901849_+	NA	NA|166aa|up_6|NC_017347.1_2902935_2903433_-	NA	NA|250aa|up_5|NC_017347.1_2903434_2904184_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_4|NC_017347.1_2904202_2905006_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|67aa|up_3|NC_017347.1_2905489_2905690_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NC_017347.1_2905816_2906386_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NC_017347.1_2906638_2907034_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NC_017347.1_2907101_2907455_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NC_017347.1_2908007_2908847_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NC_017347.1_2908889_2909609_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NC_017347.1_2909608_2911486_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NC_017347.1_2911552_2912932_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NC_017347.1_2913075_2913429_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NC_017347.1_2913548_2913686_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
