The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	404740	453776	4995263	capsid,tail,transposase,head	Leptospira_phage(22.22%)	42	NA	NA
WP_013516299.1|404740_406255_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	50.7	6.3e-113
WP_013721253.1|409185_409719_-	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_013721254.1|409733_410621_-	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_013517351.1|410624_411230_-	LemA family protein	NA	NA	NA	NA	NA
WP_013517352.1|411350_411818_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_013517353.1|411863_412400_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_013517354.1|412555_413392_-	cytochrome c5 family protein	NA	NA	NA	NA	NA
WP_013721255.1|413521_414967_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_013517356.1|414991_418147_-	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.4	1.1e-42
WP_013517357.1|418165_419446_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_013517358.1|419637_420258_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013517320.1|420913_422104_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	28.7	4.0e-14
WP_013517359.1|422280_422664_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_013517360.1|422663_423254_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA	NA
WP_013517361.1|423384_423816_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_013517362.1|423816_424512_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_013517363.1|424744_425251_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_013517364.1|425305_425686_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_013517365.1|425960_430085_+	DNA-directed RNA polymerase subunit beta	NA	A0A146JCU1	Tokyovirus	28.9	3.4e-20
WP_013517366.1|430105_434335_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.3	5.0e-67
WP_013517367.1|434454_435021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013517368.1|435017_436385_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_013517369.1|436428_437010_+	DUF4390 domain-containing protein	NA	NA	NA	NA	NA
WP_013517370.1|437006_439295_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_013721256.1|439334_440030_+	response regulator	NA	NA	NA	NA	NA
WP_013721257.1|440382_440643_-|head	phage head closure protein	head	Q6JIM4	Burkholderia_virus	44.4	6.5e-10
WP_085945358.1|440682_441815_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.3	3.9e-51
WP_013721260.1|441957_442233_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4J711	uncultured_Caudovirales_phage	34.0	1.0e-05
WP_049791314.1|443516_443822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013721261.1|444077_444341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013721262.1|444337_444511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013721263.1|444507_444693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013721264.1|444692_445772_-|capsid	phage major capsid protein	capsid	H6WZL0	Escherichia_phage	27.5	2.4e-18
WP_013721265.1|445864_446272_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013721266.1|446258_446603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013721267.1|446599_447796_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_013721268.1|447792_448257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013721269.1|448267_448468_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_013721271.1|449099_449366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081471063.1|451221_451674_-	CoA transferase	NA	NA	NA	NA	NA
WP_148238004.1|451682_451919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013721273.1|452645_453776_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	2090315	2095047	4995263		Acidithiobacillus_phage(83.33%)	7	NA	NA
WP_013722037.1|2090315_2091113_-	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	6.8e-26
WP_009238671.1|2091366_2092086_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_004629233.1|2092183_2092663_-	hypothetical protein	NA	K4I1C7	Acidithiobacillus_phage	60.1	2.8e-43
WP_004629235.1|2092659_2093031_-	hypothetical protein	NA	K4HZX2	Acidithiobacillus_phage	73.2	1.8e-45
WP_009238672.1|2093030_2094410_-	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	88.7	2.8e-237
WP_009238673.1|2094406_2094856_-	DUF2924 domain-containing protein	NA	K4I3X1	Acidithiobacillus_phage	86.5	1.3e-69
WP_009238674.1|2094855_2095047_-	hypothetical protein	NA	K4HZ94	Acidithiobacillus_phage	77.8	1.5e-16
>prophage 3
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	2098879	2151889	4995263	head,terminase,portal,tail,capsid,protease	Acidithiobacillus_phage(39.39%)	57	NA	NA
WP_009238679.1|2098879_2099137_+	hypothetical protein	NA	K4I3X3	Acidithiobacillus_phage	70.1	1.4e-25
WP_009238680.1|2099148_2099631_+	hypothetical protein	NA	K4HZ96	Acidithiobacillus_phage	56.1	1.2e-41
WP_009238681.1|2099627_2100476_+	ATP-binding protein	NA	K4HZX9	Acidithiobacillus_phage	70.6	5.2e-109
WP_009238682.1|2100481_2101105_+	hypothetical protein	NA	K4ICM8	Acidithiobacillus_phage	71.3	2.4e-79
WP_009238683.1|2101116_2101971_+	P63C domain-containing protein	NA	NA	NA	NA	NA
WP_009238684.1|2101967_2102468_+	hypothetical protein	NA	K4I3X7	Acidithiobacillus_phage	76.7	1.3e-70
WP_009277338.1|2102464_2103199_+	hypothetical protein	NA	K4HZA0	Acidithiobacillus_phage	76.3	6.6e-108
WP_009238686.1|2103195_2103441_+	hypothetical protein	NA	K4I1D6	Acidithiobacillus_phage	65.7	5.0e-20
WP_009238687.1|2103437_2105738_+	hypothetical protein	NA	K4HZY1	Acidithiobacillus_phage	71.8	0.0e+00
WP_009238688.1|2105879_2106356_+	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	75.8	7.8e-62
WP_009238689.1|2106357_2106561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238690.1|2106553_2106970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238691.1|2107315_2108731_+	site-specific DNA-methyltransferase	NA	K4I3Y2	Acidithiobacillus_phage	61.7	1.1e-164
WP_009238692.1|2108727_2109990_+	site-specific DNA-methyltransferase	NA	A0A2H4JGF1	uncultured_Caudovirales_phage	88.8	5.8e-221
WP_009238693.1|2109953_2110322_-	hypothetical protein	NA	A0A2H4JI44	uncultured_Caudovirales_phage	87.5	1.5e-57
WP_004629273.1|2110419_2110941_-	DUF3489 domain-containing protein	NA	A0A2H4JE21	uncultured_Caudovirales_phage	89.4	2.6e-26
WP_004629275.1|2111036_2111243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004629278.1|2111349_2111895_+	hypothetical protein	NA	A0A2H4JCL4	uncultured_Caudovirales_phage	66.3	9.0e-54
WP_004629280.1|2111894_2113853_+|terminase	phage terminase large subunit family protein	terminase	A0A2H4JIC6	uncultured_Caudovirales_phage	88.2	0.0e+00
WP_004629282.1|2113882_2114374_+	hypothetical protein	NA	A0A0F6WCR7	Sinorhizobium_phage	47.4	2.3e-24
WP_004629284.1|2114373_2114766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004629285.1|2114765_2114987_+	hypothetical protein	NA	A0A2H4JCJ9	uncultured_Caudovirales_phage	56.2	3.8e-11
WP_004629287.1|2114988_2116503_+|portal	phage portal protein	portal	Q75QM9	Wolbachia_phage	55.7	1.2e-151
WP_009238694.1|2116536_2117778_+	S49 family peptidase	NA	K4HZZ6	Acidithiobacillus_phage	41.2	7.0e-62
WP_004629291.1|2117779_2118157_+|head	head decoration protein	head	A0A1B2LRT0	Wolbachia_phage	53.9	1.8e-16
WP_004629292.1|2118159_2119164_+|capsid	major capsid protein	capsid	Q9JMM2	Wolbachia_phage	67.1	1.4e-124
WP_004629294.1|2119163_2119466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004629296.1|2119470_2119917_+	hypothetical protein	NA	A0A2I5ARB4	Synechococcus_phage	30.5	2.1e-08
WP_004629298.1|2119922_2120144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004629300.1|2120140_2120893_+	hypothetical protein	NA	A0A2D2W2E0	Stenotrophomonas_phage	41.4	2.1e-40
WP_009238695.1|2120904_2121303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013722038.1|2121299_2121509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004629303.1|2121483_2122128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238696.1|2122129_2126167_+|tail	phage tail tape measure protein	tail	A0A0P0ZCJ4	Stx2-converting_phage	29.4	1.9e-31
WP_009238697.1|2126203_2126614_+	hypothetical protein	NA	A0A0M4UTA7	Ralstonia_phage	48.5	2.0e-29
WP_009238698.1|2126613_2130222_+	hypothetical protein	NA	A0A0M4U447	Ralstonia_phage	40.7	8.7e-238
WP_009238699.1|2130269_2131535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238700.1|2131538_2132624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238701.1|2132620_2133016_+	hypothetical protein	NA	Q6VSZ7	Vibrio_phage	30.2	1.1e-05
WP_009238702.1|2133019_2135047_+	hypothetical protein	NA	A0A0M4UKC5	Ralstonia_phage	37.2	2.5e-56
WP_009238703.1|2135039_2135261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238704.1|2135327_2135633_+	hypothetical protein	NA	K4I011	Acidithiobacillus_phage	67.9	2.4e-24
WP_009238705.1|2135629_2135857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238706.1|2135853_2136354_+	lysozyme	NA	H2ELT8	Pseudomonas_phage	39.6	4.3e-18
WP_009238707.1|2136350_2136848_+	hypothetical protein	NA	A0A077K9R7	Ralstonia_phage	48.7	1.5e-26
WP_009238708.1|2136956_2137247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009238709.1|2137251_2138199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009238710.1|2138211_2138988_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_009238711.1|2138992_2139514_-	SLATT domain-containing protein	NA	NA	NA	NA	NA
WP_009238712.1|2139539_2142611_-	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_009238713.1|2142597_2144022_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_009238714.1|2144021_2146406_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_009238715.1|2146417_2148136_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_009238716.1|2148151_2149051_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_009238717.1|2149259_2149664_+	lysozyme	NA	K4I410	Acidithiobacillus_phage	82.1	1.4e-56
WP_009238718.1|2149745_2150900_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	29.9	1.6e-28
WP_009238719.1|2150923_2151889_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 4
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	2156238	2171826	4995263	transposase	Acidithiobacillus_phage(45.45%)	18	NA	NA
WP_009238724.1|2156238_2159088_-	heat shock survival AAA family ATPase ClpK	NA	K4FB40	Cronobacter_phage	40.9	1.5e-128
WP_009238725.1|2159181_2159751_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_003454941.1|2159783_2160065_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_108912252.1|2160292_2160472_-	phospholipase	NA	NA	NA	NA	NA
WP_013518706.1|2160804_2161476_-	SOS response-associated peptidase	NA	A0A1S5NTJ1	Burkholderia_phage	30.5	5.2e-19
WP_013518707.1|2161531_2162017_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	42.4	2.9e-19
WP_013518708.1|2162016_2163303_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	42.2	2.7e-80
WP_013518709.1|2163299_2163764_-	hypothetical protein	NA	K4I1C7	Acidithiobacillus_phage	62.7	1.3e-48
WP_041701437.1|2163760_2164114_-	hypothetical protein	NA	K4HZX2	Acidithiobacillus_phage	80.3	5.3e-47
WP_013518711.1|2164143_2165523_-	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	87.6	4.2e-233
WP_013518712.1|2165522_2165969_-	DUF2924 domain-containing protein	NA	K4I3X1	Acidithiobacillus_phage	80.3	8.7e-63
WP_013518713.1|2165965_2166160_-	hypothetical protein	NA	K4HZ94	Acidithiobacillus_phage	66.7	2.1e-13
WP_013518714.1|2166339_2166618_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013518715.1|2166618_2166882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085945337.1|2167054_2168288_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	75.9	2.0e-117
WP_013722040.1|2168351_2169278_-	glutaminase	NA	NA	NA	NA	NA
WP_013518721.1|2169281_2170469_-	amidohydrolase	NA	NA	NA	NA	NA
WP_180987920.1|2170506_2171826_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	35.2	1.8e-63
>prophage 6
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	3965097	4013018	4995263	transposase,tRNA,protease	Leptospira_phage(11.11%)	46	NA	NA
WP_148237968.1|3965097_3966193_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.1	5.7e-39
WP_013520482.1|3966347_3966674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722906.1|3966697_3967414_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_013520480.1|3967427_3968276_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_013520479.1|3968282_3969143_-	TonB family protein	NA	NA	NA	NA	NA
WP_013722907.1|3969152_3971231_-	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_013722908.1|3971354_3972098_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_013722909.1|3972186_3972768_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_013722910.1|3972764_3973178_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_013722911.1|3973327_3974887_+	O-antigen ligase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_013520473.1|3974989_3975577_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_013520472.1|3975612_3976794_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_013722912.1|3976832_3978293_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_013722913.1|3978534_3979653_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	46.6	8.0e-81
WP_013520469.1|3979738_3980050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013520468.1|3980097_3981489_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_013520467.1|3981604_3982219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013520466.1|3982215_3982791_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_013520465.1|3982901_3983360_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_013520464.1|3983375_3984725_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_013722916.1|3984817_3985714_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_013520462.1|3985767_3986922_+	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_013722917.1|3986956_3987859_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_013722918.1|3987941_3988490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013520459.1|3988669_3989860_-	ribonucleotide-diphosphate reductase subunit beta	NA	M1HSI6	Paramecium_bursaria_Chlorella_virus	29.0	5.2e-38
WP_013520458.1|3989998_3992911_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	46.9	3.3e-179
WP_013520457.1|3993195_3993777_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1B0T6G1	Thiobacimonas_phage	49.1	6.7e-07
WP_013520456.1|3993760_3995251_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_013722919.1|3995267_3996971_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_013520454.1|3996983_3997211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722920.1|3997207_3998005_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_013722921.1|3998094_3999474_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_013520451.1|3999518_4000868_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_013520450.1|4000935_4001337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722922.1|4002356_4004138_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_013520447.1|4004282_4005002_-	DsbC family protein	NA	NA	NA	NA	NA
WP_013722923.1|4005045_4006176_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_013722924.1|4006317_4007412_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_013722925.1|4007630_4007843_+	DUF4102 domain-containing protein	NA	Q8W6M6	Sinorhizobium_phage	40.6	1.4e-07
WP_013721259.1|4007908_4008175_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013722926.1|4008207_4008450_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013516301.1|4008504_4008933_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	32.7	2.5e-06
WP_013516300.1|4008929_4009262_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_013516299.1|4009344_4010859_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	50.7	6.3e-113
WP_085945355.1|4010770_4011499_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.0	5.8e-24
WP_013722479.1|4011491_4013018_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	4115804	4165605	4995263	tail,transposase,plate,tRNA	Flavobacterium_phage(16.67%)	48	NA	NA
WP_013520291.1|4115804_4116281_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_013520290.1|4116335_4117073_-	ComF family protein	NA	NA	NA	NA	NA
WP_013520289.1|4117108_4118017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013520288.1|4118468_4119632_+	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
WP_013520287.1|4119669_4121301_+	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	38.5	1.6e-08
WP_013520285.1|4121450_4122074_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_013520284.1|4122073_4122286_+	DUF2970 domain-containing protein	NA	NA	NA	NA	NA
WP_013520283.1|4122345_4123230_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA	NA
WP_174764525.1|4123303_4123528_-	twin transmembrane helix small protein	NA	NA	NA	NA	NA
WP_013520281.1|4123543_4124311_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_013520280.1|4124252_4125008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013520279.1|4125004_4126162_+	COX15/CtaA family protein	NA	NA	NA	NA	NA
WP_013520278.1|4126158_4127085_+	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
WP_013520277.1|4127142_4127706_+	SCO family protein	NA	NA	NA	NA	NA
WP_013520276.1|4127739_4128750_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_013520275.1|4128892_4129828_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	34.1	3.2e-35
WP_013516299.1|4130721_4132236_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	50.7	6.3e-113
WP_013516300.1|4132318_4132651_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_013516301.1|4132647_4133076_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	32.7	2.5e-06
WP_013722926.1|4133130_4133373_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_013721259.1|4133405_4133672_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049791360.1|4133968_4134166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722970.1|4134222_4135314_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_013722971.1|4135387_4135720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013722972.1|4135729_4136962_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_013722973.1|4137053_4137671_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_013722974.1|4137716_4138454_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_013517901.1|4138521_4139424_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_013517902.1|4139420_4140437_-	serine/threonine protein kinase	NA	A0A1V0SDC3	Indivirus	25.1	1.1e-12
WP_174764497.1|4140517_4141426_+	YicC family protein	NA	NA	NA	NA	NA
WP_013722976.1|4141457_4144895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013517905.1|4144915_4147213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722977.1|4147209_4150125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722978.1|4150121_4152605_-|plate	putative baseplate assembly protein	plate	NA	NA	NA	NA
WP_013517908.1|4152601_4152970_-	GPW/gp25 family protein	NA	NA	NA	NA	NA
WP_013517909.1|4152973_4153294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013517910.1|4153304_4153814_-|plate	baseplate assembly protein	plate	NA	NA	NA	NA
WP_013722979.1|4153825_4154968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013517912.1|4154970_4155333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013517913.1|4155335_4155992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722980.1|4156008_4157364_-	DUF4157 domain-containing protein	NA	NA	NA	NA	NA
WP_013517915.1|4157539_4157806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013722981.1|4157802_4160340_-	DUF4157 domain-containing protein	NA	NA	NA	NA	NA
WP_013722982.1|4160336_4162277_-	ATP-binding protein	NA	A0A109WUE1	Acidianus_tailed_spindle_virus	36.2	9.8e-10
WP_013517918.1|4162273_4163611_-	DUF4255 domain-containing protein	NA	NA	NA	NA	NA
WP_013722983.1|4163607_4164348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013517920.1|4164344_4165064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013517921.1|4165080_4165605_-|tail	phage tail protein	tail	NA	NA	NA	NA
>prophage 8
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	4482177	4516498	4995263	transposase,tRNA,protease	uncultured_Mediterranean_phage(25.0%)	32	NA	NA
WP_013723095.1|4482177_4483350_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.5	2.2e-81
WP_013723096.1|4483354_4484398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013520714.1|4484520_4484934_+	PAS sensor domain-containing protein	NA	NA	NA	NA	NA
WP_013520715.1|4485378_4486209_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013520716.1|4486258_4487227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_013520717.1|4487345_4488326_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_013520718.1|4488379_4489054_+	RraA family protein	NA	NA	NA	NA	NA
WP_013520719.1|4489022_4489718_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013723097.1|4489737_4491681_-	MFS transporter	NA	NA	NA	NA	NA
WP_013723098.1|4491870_4493751_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	40.8	7.8e-97
WP_013520722.1|4493839_4494406_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_041701709.1|4494423_4495053_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_013723100.1|4495054_4495705_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013723101.1|4495712_4496696_-	zinc-dependent alcohol dehydrogenase family protein	NA	L7RC95	Acanthamoeba_polyphaga_moumouvirus	30.3	8.7e-15
WP_013520726.1|4496910_4497900_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_013723102.1|4497922_4499389_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013520728.1|4499385_4500492_+	peroxidase-related enzyme	NA	NA	NA	NA	NA
WP_013520729.1|4500551_4501802_-	FIST C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_013520730.1|4501826_4502609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013520731.1|4502836_4503268_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_013520732.1|4503325_4504078_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_013723103.1|4504873_4506151_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_013723104.1|4506147_4506393_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_193353132.1|4506595_4506790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013721273.1|4508027_4509158_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_148262990.1|4509204_4509417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085945338.1|4509692_4510907_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_049791396.1|4510991_4511732_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_013723106.1|4511760_4512651_-	transporter	NA	NA	NA	NA	NA
WP_013723107.1|4512752_4513505_-	glucose 1-dehydrogenase	NA	NA	NA	NA	NA
WP_085945337.1|4513577_4514812_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	75.9	2.0e-117
WP_013721393.1|4514971_4516498_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NC_015422	Alicycliphilus denitrificans K601, complete sequence	4995263	4545747	4554339	4995263	integrase,transposase	Brevibacillus_phage(33.33%)	7	4548839:4548853	4556204:4556218
WP_013723132.1|4545747_4547127_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
4548839:4548853	attL	CTCGTCCATCGACGG	NA	NA	NA	NA
WP_049791364.1|4548863_4549595_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_158307698.1|4549703_4550468_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_158307699.1|4550401_4550947_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	25.7	4.0e-09
WP_013723133.1|4550943_4551876_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A023ZX87	Mycobacterium_phage	33.2	9.2e-06
WP_013723134.1|4551872_4552868_+|integrase	site-specific integrase	integrase	A0A142F1N9	Bacillus_phage	26.8	5.2e-15
WP_013723135.1|4553148_4554339_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
4556204:4556218	attR	CCGTCGATGGACGAG	NA	NA	NA	NA
>prophage 1
NC_015423	Alicycliphilus denitrificans K601 plasmid pALIDE201, complete sequence	75488	42699	50646	75488		Escherichia_phage(16.67%)	11	NA	NA
WP_013723323.1|42699_43347_+	phosphohydrolase	NA	A0A2D2W2R9	Escherichia_phage	33.0	3.4e-07
WP_009242148.1|44063_44336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009242147.1|44345_44723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013723324.1|44726_45713_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	43.5	5.4e-41
WP_009242145.1|45868_46288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009242144.1|46316_47099_+	AAA family ATPase	NA	A0A142F1W4	Mycobacterium_phage	39.1	3.7e-08
WP_013723325.1|47111_48404_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	33.3	4.2e-09
WP_004637276.1|48484_48865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004637274.1|48938_49262_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	51.9	1.5e-16
WP_004637272.1|49258_49570_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_013723326.1|49683_50646_+	replication initiator protein A	NA	A0A0K1Y6J9	Rhodobacter_phage	36.4	2.5e-38
