assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000204115.1_ASM20411v1	NC_015424	Aeromonas veronii B565, complete sequence	1	666006-666111	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL,RT	Orphan	ACTAAACGCCAAGGTTTGATCCGAATGAAATCTG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,RT	NA,NA	NA|519aa|up_9|NC_015424.1_658037_659594_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|379aa|up_8|NC_015424.1_659605_660742_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|39aa|up_7|NC_015424.1_660756_660873_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|82aa|up_6|NC_015424.1_660925_661171_+	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE)	NA|136aa|up_5|NC_015424.1_661276_661684_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|230aa|up_4|NC_015424.1_661673_662363_+	TIGR02796, Protein_TolQ, TolQ protein	NA|149aa|up_3|NC_015424.1_662362_662809_+	TIGR02801, Protein_TolR, TolR protein	NA|378aa|up_2|NC_015424.1_662814_663948_+	pfam06519, TolA, TolA C-terminal	NA|442aa|up_1|NC_015424.1_664043_665369_+	PRK04792, tolB, Tol-Pal system protein TolB	NA|175aa|up_0|NC_015424.1_665418_665943_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|438aa|down_0|NC_015424.1_667549_668863_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|240aa|down_1|NC_015424.1_669295_670015_+	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|438aa|down_2|NC_015424.1_670018_671332_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|280aa|down_3|NC_015424.1_671543_672383_-	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|188aa|down_4|NC_015424.1_672589_673153_+	pfam10973, DUF2799, Protein of unknown function (DUF2799)	NA|273aa|down_5|NC_015424.1_673204_674023_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|410aa|down_6|NC_015424.1_674133_675363_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|208aa|down_7|NC_015424.1_675469_676093_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|159aa|down_8|NC_015424.1_676404_676881_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|106aa|down_9|NC_015424.1_677016_677334_-	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]
GCF_000204115.1_ASM20411v1	NC_015424	Aeromonas veronii B565, complete sequence	2	723523-723650	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL,RT	Orphan	CGGGATCAATTGTCAGCACGGTTTTTCATTTGGTCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,RT	NA,NA|140aa|down_7|NC_015424.1_730045_730465_-	NA|294aa|up_9|NC_015424.1_713271_714153_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|129aa|up_8|NC_015424.1_714311_714698_+	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ	NA|107aa|up_7|NC_015424.1_714694_715015_+	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI	NA|134aa|up_6|NC_015424.1_715093_715495_-	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|773aa|up_5|NC_015424.1_715553_717872_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|816aa|up_4|NC_015424.1_717945_720393_-	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional	NA|181aa|up_3|NC_015424.1_720571_721114_+	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|248aa|up_2|NC_015424.1_721110_721854_+	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|150aa|up_1|NC_015424.1_721973_722423_+	PRK10778, dksA, RNA polymerase-binding protein DksA	NA|303aa|up_0|NC_015424.1_722534_723443_+	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase	NA|489aa|down_0|NC_015424.1_723700_725167_+	PRK11623, pcnB, poly(A) polymerase I; Provisional	NA|170aa|down_1|NC_015424.1_725178_725688_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|265aa|down_2|NC_015424.1_725684_726479_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|286aa|down_3|NC_015424.1_726680_727538_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|117aa|down_4|NC_015424.1_727562_727913_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|456aa|down_5|NC_015424.1_728062_729430_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|176aa|down_6|NC_015424.1_729513_730041_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|140aa|down_7|NC_015424.1_730045_730465_-	NA	NA|136aa|down_8|NC_015424.1_730587_730995_-	cd17032, T3SC_IA_SycT-like, Class IA type III secretion system chaperone protein, similar to Yersinia enterocolitica SycT	NA|701aa|down_9|NC_015424.1_731240_733343_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional
GCF_000204115.1_ASM20411v1	NC_015424	Aeromonas veronii B565, complete sequence	3	2842448-2842596	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL,RT	Orphan	TCAGGGATAGATGCTCACTTCTATCAGATTCTGATCCGGGTCGAGGAAGTA	51	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,RT	NA|357aa|up_7|NC_015424.1_2834035_2835106_-,NA|633aa|down_0|NC_015424.1_2843446_2845345_+,NA|276aa|down_1|NC_015424.1_2845341_2846169_+,NA|254aa|down_2|NC_015424.1_2846172_2846934_+	NA|524aa|up_9|NC_015424.1_2830871_2832443_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|473aa|up_8|NC_015424.1_2832565_2833984_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|357aa|up_7|NC_015424.1_2834035_2835106_-	NA	NA|213aa|up_6|NC_015424.1_2835349_2835988_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|156aa|up_5|NC_015424.1_2836126_2836594_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|52aa|up_4|NC_015424.1_2836688_2836844_+	PRK11038, PRK11038, hypothetical protein; Provisional	NA|281aa|up_3|NC_015424.1_2836919_2837762_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|421aa|up_2|NC_015424.1_2837939_2839202_+	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters	NA|339aa|up_1|NC_015424.1_2839269_2840286_-	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF	NA|527aa|up_0|NC_015424.1_2840743_2842324_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|633aa|down_0|NC_015424.1_2843446_2845345_+	NA	NA|276aa|down_1|NC_015424.1_2845341_2846169_+	NA	NA|254aa|down_2|NC_015424.1_2846172_2846934_+	NA	NA|530aa|down_3|NC_015424.1_2847011_2848601_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|150aa|down_4|NC_015424.1_2848669_2849119_+	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|194aa|down_5|NC_015424.1_2849305_2849887_+	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|193aa|down_6|NC_015424.1_2849889_2850468_+	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|904aa|down_7|NC_015424.1_2850482_2853194_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|351aa|down_8|NC_015424.1_2853205_2854258_+	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|211aa|down_9|NC_015424.1_2854411_2855044_+	PRK01908, PRK01908, electron transport complex protein RnfG; Validated
GCF_000204115.1_ASM20411v1	NC_015424	Aeromonas veronii B565, complete sequence	4	2881185-2881343	4	CRISPRCasFinder	no	DinG	cas3,DEDDh,csa3,DinG,WYL,RT	Type IV-A	AACTGATCCCATCATCAAGGTGCAACAGGCATCGAGAAGTGCAGCCATCACCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,RT	NA|229aa|up_7|NC_015424.1_2871778_2872465_+,NA|181aa|down_5|NC_015424.1_2886782_2887325_-	NA|466aa|up_9|NC_015424.1_2868908_2870306_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|463aa|up_8|NC_015424.1_2870317_2871706_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|229aa|up_7|NC_015424.1_2871778_2872465_+	NA	NA|246aa|up_6|NC_015424.1_2872547_2873285_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|132aa|up_5|NC_015424.1_2873530_2873926_+	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional	NA|197aa|up_4|NC_015424.1_2874119_2874710_+	PRK10360, PRK10360, transcriptional regulator UhpA	NA|507aa|up_3|NC_015424.1_2874706_2876227_+	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB	NA|445aa|up_2|NC_015424.1_2876248_2877583_+	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC	NA|378aa|up_1|NC_015424.1_2877675_2878809_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|267aa|up_0|NC_015424.1_2879329_2880130_+	cd13629, PBP2_Dsm1740, Amino acid-binding domain of the type 2 periplasmic binding fold superfamily	NA|248aa|down_0|NC_015424.1_2881385_2882129_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|264aa|down_1|NC_015424.1_2882236_2883028_-	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|280aa|down_2|NC_015424.1_2883196_2884036_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|472aa|down_3|NC_015424.1_2884161_2885577_-	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family	NA|301aa|down_4|NC_015424.1_2885586_2886489_-	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|181aa|down_5|NC_015424.1_2886782_2887325_-	NA	NA|440aa|down_6|NC_015424.1_2887344_2888664_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|237aa|down_7|NC_015424.1_2888854_2889565_-	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|273aa|down_8|NC_015424.1_2889650_2890469_-	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional	NA|550aa|down_9|NC_015424.1_2890602_2892252_-	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
GCF_000204115.1_ASM20411v1	NC_015424	Aeromonas veronii B565, complete sequence	5	3631276-3631371	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL,RT	Orphan	ACGACTTCCAGACCGAAACCACC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,RT	NA,NA|95aa|down_4|NC_015424.1_3636784_3637069_+	NA|323aa|up_9|NC_015424.1_3621536_3622505_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|72aa|up_8|NC_015424.1_3622519_3622735_+	pfam04102, SlyX, SlyX	NA|314aa|up_7|NC_015424.1_3622862_3623804_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|325aa|up_6|NC_015424.1_3623806_3624781_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|519aa|up_5|NC_015424.1_3624880_3626437_-	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|575aa|up_4|NC_015424.1_3626507_3628232_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|165aa|up_3|NC_015424.1_3628719_3629214_-	PRK11068, PRK11068, phosphatidylglycerophosphatase A; Provisional	NA|320aa|up_2|NC_015424.1_3629210_3630170_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|138aa|up_1|NC_015424.1_3630227_3630641_-	PRK00202, nusB, transcription antitermination factor NusB	NA|157aa|up_0|NC_015424.1_3630655_3631126_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|218aa|down_0|NC_015424.1_3632588_3633242_-	PRK09289, PRK09289, riboflavin synthase	NA|370aa|down_1|NC_015424.1_3633297_3634407_-	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|150aa|down_2|NC_015424.1_3634606_3635056_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|418aa|down_3|NC_015424.1_3635206_3636460_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|95aa|down_4|NC_015424.1_3636784_3637069_+	NA	NA|942aa|down_5|NC_015424.1_3637117_3639943_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|349aa|down_6|NC_015424.1_3640013_3641060_+	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional	NA|135aa|down_7|NC_015424.1_3641097_3641502_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|238aa|down_8|NC_015424.1_3641538_3642252_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|389aa|down_9|NC_015424.1_3642397_3643564_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC
