assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	1	577702-577791	1	CRISPRCasFinder	no		c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Orphan	CCAAGCGCATGTTCGGATTCAATT	24	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA,NA|754aa|down_3|NC_014366.1_580884_583146_+,NA|455aa|down_5|NC_014366.1_583772_585137_-	NA|517aa|up_9|NC_014366.1_563068_564619_-	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|386aa|up_8|NC_014366.1_564729_565887_-	TIGR01836, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	NA|279aa|up_7|NC_014366.1_566051_566888_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|351aa|up_6|NC_014366.1_567255_568308_+	pfam01032, FecCD, FecCD transport family	NA|269aa|up_5|NC_014366.1_568352_569159_+	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional	NA|692aa|up_4|NC_014366.1_569303_571379_+	cd01948, EAL, EAL domain	NA|505aa|up_3|NC_014366.1_571453_572968_-	pfam00067, p450, Cytochrome P450	NA|186aa|up_2|NC_014366.1_573166_573724_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|775aa|up_1|NC_014366.1_573893_576218_+	cd02762, MopB_1, The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	NA|461aa|up_0|NC_014366.1_576233_577616_-	cd08189, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|326aa|down_0|NC_014366.1_577864_578842_+	pfam13536, EmrE, Putative multidrug resistance efflux transporter	NA|418aa|down_1|NC_014366.1_578876_580130_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|121aa|down_2|NC_014366.1_580276_580639_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|754aa|down_3|NC_014366.1_580884_583146_+	NA	NA|176aa|down_4|NC_014366.1_583234_583762_-	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|455aa|down_5|NC_014366.1_583772_585137_-	NA	NA|79aa|down_6|NC_014366.1_585438_585675_+	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown]	NA|132aa|down_7|NC_014366.1_585671_586067_+	cd18736, PIN_CcVapC1-like, VapC-like PIN domain of Caulobacter Crescentus VapC1-like and related proteins	NA|252aa|down_8|NC_014366.1_586253_587009_+	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|87aa|down_9|NC_014366.1_587008_587269_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	2	883266-883352	2	CRISPRCasFinder	no		c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Orphan	GCGATCACCGCATAGGCGACTGTGAAC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA|77aa|up_8|NC_014366.1_874293_874524_+,NA|116aa|up_6|NC_014366.1_874984_875332_-,NA|193aa|up_2|NC_014366.1_879098_879677_+,NA|76aa|up_1|NC_014366.1_879778_880006_+,NA|950aa|up_0|NC_014366.1_880187_883037_+,NA	NA|262aa|up_9|NC_014366.1_873280_874066_+	pfam13391, HNH_2, HNH endonuclease	NA|77aa|up_8|NC_014366.1_874293_874524_+	NA	NA|127aa|up_7|NC_014366.1_874527_874908_+	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|116aa|up_6|NC_014366.1_874984_875332_-	NA	NA|204aa|up_5|NC_014366.1_875511_876123_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|341aa|up_4|NC_014366.1_876115_877138_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|439aa|up_3|NC_014366.1_877770_879087_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|193aa|up_2|NC_014366.1_879098_879677_+	NA	NA|76aa|up_1|NC_014366.1_879778_880006_+	NA	NA|950aa|up_0|NC_014366.1_880187_883037_+	NA	NA|91aa|down_0|NC_014366.1_884245_884518_-	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|383aa|down_1|NC_014366.1_884550_885699_-	PRK10880, PRK10880, adenine DNA glycosylase	NA|1045aa|down_2|NC_014366.1_885869_889004_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|198aa|down_3|NC_014366.1_889050_889644_+	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB	NA|218aa|down_4|NC_014366.1_889678_890332_+	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|245aa|down_5|NC_014366.1_890372_891107_+	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	NA|259aa|down_6|NC_014366.1_891195_891972_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|456aa|down_7|NC_014366.1_892063_893431_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|398aa|down_8|NC_014366.1_893571_894765_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|532aa|down_9|NC_014366.1_894787_896383_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	3	940433-941681	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Type I-E	GCGTTCCCCGCATCTGCGGGGATGAACCG,GCGTTCCCCGCATCTGCGGGGATGAACCG,GCGTTCCCCGCATCTGCGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,20	20	TypeI-E	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA,NA|301aa|down_1|NC_014366.1_942630_943533_+,NA|283aa|down_4|NC_014366.1_948833_949682_+,NA|590aa|down_8|NC_014366.1_952611_954381_+,NA|517aa|down_9|NC_014366.1_954692_956243_-	NA|845aa|up_9|NC_014366.1_927950_930485_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	cas3|911aa|up_8|NC_014366.1_930595_933328_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|518aa|up_7|NC_014366.1_933588_935142_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|214aa|up_6|NC_014366.1_935138_935780_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|345aa|up_5|NC_014366.1_935776_936811_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|256aa|up_4|NC_014366.1_936814_937582_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|222aa|up_3|NC_014366.1_937578_938244_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	NA|274aa|up_2|NC_014366.1_938282_939104_+	pfam04383, KilA-N, KilA-N domain	cas1|296aa|up_1|NC_014366.1_939158_940046_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|97aa|up_0|NC_014366.1_940042_940333_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|189aa|down_0|NC_014366.1_941862_942429_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|301aa|down_1|NC_014366.1_942630_943533_+	NA	NA|889aa|down_2|NC_014366.1_943960_946627_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|554aa|down_3|NC_014366.1_946657_948319_+	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|283aa|down_4|NC_014366.1_948833_949682_+	NA	NA|314aa|down_5|NC_014366.1_949856_950798_-	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|199aa|down_6|NC_014366.1_950794_951391_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|221aa|down_7|NC_014366.1_951387_952050_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|590aa|down_8|NC_014366.1_952611_954381_+	NA	NA|517aa|down_9|NC_014366.1_954692_956243_-	NA
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	4	2859729-2859824	4	CRISPRCasFinder	no		c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Orphan	CAGACGCAAGCTTCGTGACATTCGC	25	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA|87aa|up_7|NC_014366.1_2849212_2849473_+,NA|209aa|up_5|NC_014366.1_2850772_2851399_+,NA	NA|282aa|up_9|NC_014366.1_2845388_2846234_-	COG4279, COG4279, Uncharacterized conserved protein [Function unknown]	NA|884aa|up_8|NC_014366.1_2846238_2848890_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|87aa|up_7|NC_014366.1_2849212_2849473_+	NA	NA|403aa|up_6|NC_014366.1_2849477_2850686_+	pfam06414, Zeta_toxin, Zeta toxin	NA|209aa|up_5|NC_014366.1_2850772_2851399_+	NA	NA|345aa|up_4|NC_014366.1_2851780_2852815_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|181aa|up_3|NC_014366.1_2852882_2853425_+	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|644aa|up_2|NC_014366.1_2853639_2855571_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|383aa|up_1|NC_014366.1_2855700_2856849_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|289aa|up_0|NC_014366.1_2856900_2857767_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|380aa|down_0|NC_014366.1_2860130_2861270_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|down_1|NC_014366.1_2861552_2864774_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|159aa|down_2|NC_014366.1_2864773_2865250_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|72aa|down_3|NC_014366.1_2865397_2865613_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|342aa|down_4|NC_014366.1_2865590_2866616_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|851aa|down_5|NC_014366.1_2866726_2869279_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|357aa|down_6|NC_014366.1_2869494_2870565_+	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|191aa|down_7|NC_014366.1_2870564_2871137_+	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|197aa|down_8|NC_014366.1_2871140_2871731_+	pfam04350, PilO, Pilus assembly protein, PilO	NA|176aa|down_9|NC_014366.1_2871734_2872262_+	pfam04351, PilP, Pilus assembly protein, PilP
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	5	3443865-3443967	5	CRISPRCasFinder	no		c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Orphan	CGTCGAACACAATCACGTCGAACACAATCGCG	32	1	1	3443897-3443934	NC_014366.1_883247-883284	NA	1	1	Orphan	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA|205aa|up_7|NC_014366.1_3435982_3436597_+,NA|237aa|up_3|NC_014366.1_3439630_3440341_+,NA|71aa|up_2|NC_014366.1_3440473_3440686_+,NA|63aa|up_1|NC_014366.1_3440682_3440871_+,NA|939aa|up_0|NC_014366.1_3440867_3443684_+,NA|82aa|down_4|NC_014366.1_3450094_3450340_+	NA|147aa|up_9|NC_014366.1_3433179_3433620_+	COG3399, COG3399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|748aa|up_8|NC_014366.1_3433679_3435923_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|205aa|up_7|NC_014366.1_3435982_3436597_+	NA	NA|117aa|up_6|NC_014366.1_3436635_3436986_+	TIGR04169, perox_w_seleSAM, alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein	NA|256aa|up_5|NC_014366.1_3437221_3437989_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|435aa|up_4|NC_014366.1_3438329_3439634_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|237aa|up_3|NC_014366.1_3439630_3440341_+	NA	NA|71aa|up_2|NC_014366.1_3440473_3440686_+	NA	NA|63aa|up_1|NC_014366.1_3440682_3440871_+	NA	NA|939aa|up_0|NC_014366.1_3440867_3443684_+	NA	NA|113aa|down_0|NC_014366.1_3445082_3445421_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|433aa|down_1|NC_014366.1_3445478_3446777_+	pfam05940, NnrS, NnrS protein	NA|289aa|down_2|NC_014366.1_3446821_3447688_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|634aa|down_3|NC_014366.1_3448040_3449942_+	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|82aa|down_4|NC_014366.1_3450094_3450340_+	NA	NA|443aa|down_5|NC_014366.1_3450549_3451878_+	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|627aa|down_6|NC_014366.1_3452041_3453922_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|324aa|down_7|NC_014366.1_3454032_3455004_+	pfam13690, CheX, Chemotaxis phosphatase CheX	NA|424aa|down_8|NC_014366.1_3455034_3456306_-	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|498aa|down_9|NC_014366.1_3456443_3457937_+	PRK00784, PRK00784, cobyric acid synthase
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	6	3444165-3444256	6	CRISPRCasFinder	no		c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Orphan	CGTCGAACACAATCACGTCGAACACAATCGCG	32	1	3	3444197-3444224|3444197-3444224|3444197-3444224	NC_014366.1_883592-883619|NC_014366.1_883607-883634|NC_014366.1_883622-883649	NA	1	1	Orphan	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA|205aa|up_7|NC_014366.1_3435982_3436597_+,NA|237aa|up_3|NC_014366.1_3439630_3440341_+,NA|71aa|up_2|NC_014366.1_3440473_3440686_+,NA|63aa|up_1|NC_014366.1_3440682_3440871_+,NA|939aa|up_0|NC_014366.1_3440867_3443684_+,NA|82aa|down_4|NC_014366.1_3450094_3450340_+	NA|147aa|up_9|NC_014366.1_3433179_3433620_+	COG3399, COG3399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|748aa|up_8|NC_014366.1_3433679_3435923_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|205aa|up_7|NC_014366.1_3435982_3436597_+	NA	NA|117aa|up_6|NC_014366.1_3436635_3436986_+	TIGR04169, perox_w_seleSAM, alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein	NA|256aa|up_5|NC_014366.1_3437221_3437989_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|435aa|up_4|NC_014366.1_3438329_3439634_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|237aa|up_3|NC_014366.1_3439630_3440341_+	NA	NA|71aa|up_2|NC_014366.1_3440473_3440686_+	NA	NA|63aa|up_1|NC_014366.1_3440682_3440871_+	NA	NA|939aa|up_0|NC_014366.1_3440867_3443684_+	NA	NA|113aa|down_0|NC_014366.1_3445082_3445421_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|433aa|down_1|NC_014366.1_3445478_3446777_+	pfam05940, NnrS, NnrS protein	NA|289aa|down_2|NC_014366.1_3446821_3447688_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|634aa|down_3|NC_014366.1_3448040_3449942_+	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|82aa|down_4|NC_014366.1_3450094_3450340_+	NA	NA|443aa|down_5|NC_014366.1_3450549_3451878_+	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|627aa|down_6|NC_014366.1_3452041_3453922_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|324aa|down_7|NC_014366.1_3454032_3455004_+	pfam13690, CheX, Chemotaxis phosphatase CheX	NA|424aa|down_8|NC_014366.1_3455034_3456306_-	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|498aa|down_9|NC_014366.1_3456443_3457937_+	PRK00784, PRK00784, cobyric acid synthase
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	7	3869154-3869251	7	CRISPRCasFinder	no		c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Orphan	GGCTATCAGCAAGGCCACCAGCAAGG	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA|109aa|up_8|NC_014366.1_3857520_3857847_+,NA|309aa|down_4|NC_014366.1_3872986_3873913_+	NA|147aa|up_9|NC_014366.1_3857083_3857524_+	PRK05685, fliS, flagellar export chaperone FliS	NA|109aa|up_8|NC_014366.1_3857520_3857847_+	NA	NA|410aa|up_7|NC_014366.1_3857865_3859095_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|658aa|up_6|NC_014366.1_3859167_3861141_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|486aa|up_5|NC_014366.1_3861309_3862767_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|435aa|up_4|NC_014366.1_3862888_3864193_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|450aa|up_3|NC_014366.1_3864206_3865556_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|103aa|up_2|NC_014366.1_3865706_3866015_+	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|576aa|up_1|NC_014366.1_3866107_3867835_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|344aa|up_0|NC_014366.1_3867838_3868870_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|455aa|down_0|NC_014366.1_3869884_3871249_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|152aa|down_1|NC_014366.1_3871277_3871733_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|121aa|down_2|NC_014366.1_3871910_3872273_+	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|231aa|down_3|NC_014366.1_3872292_3872985_+	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional	NA|309aa|down_4|NC_014366.1_3872986_3873913_+	NA	NA|101aa|down_5|NC_014366.1_3874047_3874350_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|584aa|down_6|NC_014366.1_3874419_3876171_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|129aa|down_7|NC_014366.1_3876239_3876626_+	pfam01627, Hpt, Hpt domain	NA|336aa|down_8|NC_014366.1_3876736_3877744_-	pfam00072, Response_reg, Response regulator receiver domain	NA|130aa|down_9|NC_014366.1_3877891_3878281_-	pfam13430, DUF4112, Domain of unknown function (DUF4112)
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	8	4141533-4142031	2,2,8	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas9	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Type II-C,Type II-B, Type II-B, or Type II-C?,Type II-A	AGTTCCGGATGCAGCACATATCCCGATAATGTAGACT,GTTCCGGATGCAGCACATATCCCGATAATGTAGACT,GTTCCGGATGCAGCACATATCCCGATAATGTAGACT	37,36,36	0	0	NA	NA	NA:NA:NA	7,7,7	7	TypeII-C,TypeII-B,TypeII-B,orTypeII-C?,TypeII-A	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA,NA|96aa|down_3|NC_014366.1_4146814_4147102_+	NA|83aa|up_9|NC_014366.1_4130332_4130581_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|190aa|up_8|NC_014366.1_4130789_4131359_-	pfam16036, Chalcone_3, Chalcone isomerase-like	NA|250aa|up_7|NC_014366.1_4131861_4132611_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|310aa|up_6|NC_014366.1_4132610_4133540_+	PLN00022, PLN00022, electron transfer flavoprotein subunit alpha; Provisional	NA|324aa|up_5|NC_014366.1_4133883_4134855_+	cd11009, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|467aa|up_4|NC_014366.1_4134957_4136358_-	PRK09198, PRK09198, putative nicotinate phosphoribosyltransferase; Provisional	NA|351aa|up_3|NC_014366.1_4136593_4137646_-	PRK05379, PRK05379, bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	NA|237aa|up_2|NC_014366.1_4137812_4138523_+	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|751aa|up_1|NC_014366.1_4138601_4140854_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|220aa|up_0|NC_014366.1_4140861_4141521_+	PRK02224, PRK02224, DNA double-strand break repair Rad50 ATPase	cas2|109aa|down_0|NC_014366.1_4142101_4142428_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|304aa|down_1|NC_014366.1_4142420_4143332_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1026aa|down_2|NC_014366.1_4143335_4146413_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|96aa|down_3|NC_014366.1_4146814_4147102_+	NA	NA|613aa|down_4|NC_014366.1_4147476_4149315_+	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|207aa|down_5|NC_014366.1_4149382_4150003_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|308aa|down_6|NC_014366.1_4149982_4150906_-	PRK02951, PRK02951, DNA replication terminus site-binding protein; Provisional	NA|299aa|down_7|NC_014366.1_4151025_4151922_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|554aa|down_8|NC_014366.1_4152089_4153751_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|532aa|down_9|NC_014366.1_4154285_4155881_-	PRK06498, PRK06498, isocitrate lyase; Provisional
GCF_000198515.1_ASM19851v1	NC_014366	gamma proteobacterium HdN1 complete genome	9	4515557-4515668	9	CRISPRCasFinder	no		c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	Orphan	GGGGGCACCCCTCCATGGGAGGGGAATTT	29	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,WYL,DinG,RT,cas3HD,cas9,csa3	NA|143aa|up_1|NC_014366.1_4514170_4514599_+,NA	NA|85aa|up_9|NC_014366.1_4505353_4505608_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|123aa|up_8|NC_014366.1_4505787_4506156_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|166aa|up_7|NC_014366.1_4506184_4506682_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|153aa|up_6|NC_014366.1_4506912_4507371_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|188aa|up_5|NC_014366.1_4507367_4507931_+	pfam13470, PIN_3, PIN domain	NA|145aa|up_4|NC_014366.1_4508083_4508518_-	pfam01724, DUF29, Domain of unknown function DUF29	NA|258aa|up_3|NC_014366.1_4508706_4509480_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|1183aa|up_2|NC_014366.1_4509768_4513317_-	cd11308, Peptidase_M14NE-CP-C_like, Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain	NA|143aa|up_1|NC_014366.1_4514170_4514599_+	NA	NA|305aa|up_0|NC_014366.1_4514588_4515503_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|299aa|down_0|NC_014366.1_4515779_4516676_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|632aa|down_1|NC_014366.1_4516890_4518786_+	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed	NA|121aa|down_2|NC_014366.1_4518809_4519172_-	pfam13380, CoA_binding_2, CoA binding domain	NA|489aa|down_3|NC_014366.1_4519451_4520918_+	pfam01229, Glyco_hydro_39, Glycosyl hydrolases family 39	NA|166aa|down_4|NC_014366.1_4521317_4521815_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|181aa|down_5|NC_014366.1_4522196_4522739_-	pfam05573, NosL, NosL	NA|272aa|down_6|NC_014366.1_4522735_4523551_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|309aa|down_7|NC_014366.1_4523576_4524503_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|449aa|down_8|NC_014366.1_4524579_4525926_-	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD	NA|876aa|down_9|NC_014366.1_4525922_4528550_-	COG3901, NosR, Regulator of nitric oxide reductase transcription [Transcription]
