assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000197755.2_ASM19775v2	NC_018587	Listeria monocytogenes SLCC2755, complete genome	1	209838-209992	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	50	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA	NA|231aa|up_9|NC_018587.1_197081_197774_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NC_018587.1_197770_198979_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NC_018587.1_199661_199970_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NC_018587.1_200088_200397_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NC_018587.1_200783_202157_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NC_018587.1_202207_203164_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NC_018587.1_203207_203921_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NC_018587.1_204193_205147_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NC_018587.1_205389_206979_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NC_018587.1_207313_208846_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NC_018587.1_211000_211870_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NC_018587.1_211941_212265_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NC_018587.1_212397_212859_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NC_018587.1_212911_213244_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|240aa|down_4|NC_018587.1_213310_214030_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NC_018587.1_214062_215004_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NC_018587.1_215297_215921_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NC_018587.1_216010_216595_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NC_018587.1_216701_217262_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NC_018587.1_217375_220915_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_000197755.2_ASM19775v2	NC_018587	Listeria monocytogenes SLCC2755, complete genome	2	502384-502968	1	CRT	no	RT	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|158aa|down_0|NC_018587.1_505754_506228_+,NA|162aa|down_1|NC_018587.1_506247_506733_+,NA|89aa|down_3|NC_018587.1_507141_507408_+	NA|222aa|up_9|NC_018587.1_485444_486110_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NC_018587.1_486130_486886_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NC_018587.1_487002_489162_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NC_018587.1_489158_490307_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NC_018587.1_490311_491259_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NC_018587.1_491414_493010_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NC_018587.1_493143_494427_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NC_018587.1_494427_495528_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NC_018587.1_495520_497071_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|694aa|up_0|NC_018587.1_499509_501591_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NC_018587.1_505754_506228_+	NA	NA|162aa|down_1|NC_018587.1_506247_506733_+	NA	NA|102aa|down_2|NC_018587.1_506760_507066_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NC_018587.1_507141_507408_+	NA	NA|321aa|down_4|NC_018587.1_507487_508450_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|276aa|down_5|NC_018587.1_509211_510039_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|120aa|down_6|NC_018587.1_510066_510426_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|187aa|down_7|NC_018587.1_510751_511312_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_8|NC_018587.1_511421_513122_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|368aa|down_9|NC_018587.1_513272_514376_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional
GCF_000197755.2_ASM19775v2	NC_018587	Listeria monocytogenes SLCC2755, complete genome	3	556330-557657	1,2,2,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAACTACTTATTATGAAATGTAAATATTA,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAANNNCTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	33,29,32,29	0	0	NA	NA	I-A:I-A:I-A:I-A	16,20,20,16	20	Unclear	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|148aa|down_5|NC_018587.1_563204_563648_+,NA|492aa|down_8|NC_018587.1_566464_567940_+	NA|610aa|up_9|NC_018587.1_544121_545951_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NC_018587.1_546051_546483_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NC_018587.1_546529_547960_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NC_018587.1_548080_548896_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NC_018587.1_549248_549971_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NC_018587.1_549986_551675_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NC_018587.1_551664_552534_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NC_018587.1_552511_553294_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|730aa|up_1|NC_018587.1_553361_555551_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NC_018587.1_555853_556132_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NC_018587.1_557729_558098_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NC_018587.1_558243_559659_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NC_018587.1_559790_560795_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NC_018587.1_560827_562144_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NC_018587.1_562345_563098_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NC_018587.1_563204_563648_+	NA	NA|554aa|down_6|NC_018587.1_563693_565355_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|247aa|down_7|NC_018587.1_565494_566235_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_8|NC_018587.1_566464_567940_+	NA	NA|499aa|down_9|NC_018587.1_567932_569429_+	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000197755.2_ASM19775v2	NC_018587	Listeria monocytogenes SLCC2755, complete genome	4	1908736-1909847	3	CRT	no		csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Orphan	TCAGCGTCNGCATCNGCATC	20	0	0	NA	NA	NA	15	15	Orphan	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|130aa|up_7|NC_018587.1_1902685_1903075_-,NA	NA|204aa|up_9|NC_018587.1_1901330_1901942_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|239aa|up_8|NC_018587.1_1901938_1902655_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|130aa|up_7|NC_018587.1_1902685_1903075_-	NA	NA|246aa|up_6|NC_018587.1_1903094_1903832_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|173aa|up_5|NC_018587.1_1903831_1904350_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|129aa|up_4|NC_018587.1_1904359_1904746_-	pfam11068, YlqD, YlqD protein	NA|245aa|up_3|NC_018587.1_1904773_1905508_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|77aa|up_2|NC_018587.1_1905618_1905849_-	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only]	NA|91aa|up_1|NC_018587.1_1905865_1906138_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|553aa|up_0|NC_018587.1_1906240_1907899_-	cd04434, LanC_like, Cyclases involved in the biosynthesis of lantibiotics, and similar proteins	NA|299aa|down_0|NC_018587.1_1911008_1911905_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|451aa|down_1|NC_018587.1_1912047_1913400_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|down_2|NC_018587.1_1913412_1913745_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|329aa|down_3|NC_018587.1_1913857_1914844_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1187aa|down_4|NC_018587.1_1914858_1918419_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|230aa|down_5|NC_018587.1_1918441_1919131_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|down_6|NC_018587.1_1919325_1919559_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|248aa|down_7|NC_018587.1_1919665_1920409_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|314aa|down_8|NC_018587.1_1920412_1921354_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|338aa|down_9|NC_018587.1_1921346_1922360_-	PRK05331, PRK05331, phosphate acyltransferase PlsX
GCF_000197755.2_ASM19775v2	NC_018587	Listeria monocytogenes SLCC2755, complete genome	5	2690187-2692864	3,4,3,4,5	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACT,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36,38,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	40,40,26,26,26	40	TypeII-B,TypeII-A,TypeII-C	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|121aa|up_0|NC_018587.1_2689298_2689661_-,NA|160aa|down_4|NC_018587.1_2699363_2699843_-	NA|159aa|up_9|NC_018587.1_2671907_2672384_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NC_018587.1_2672383_2675371_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NC_018587.1_2675868_2676711_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NC_018587.1_2676760_2678242_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NC_018587.1_2678342_2679230_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NC_018587.1_2685020_2686049_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NC_018587.1_2686317_2687844_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NC_018587.1_2687881_2688733_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NC_018587.1_2688754_2689177_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NC_018587.1_2689298_2689661_-	NA	csn2|221aa|down_0|NC_018587.1_2692992_2693655_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NC_018587.1_2693644_2693986_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NC_018587.1_2693982_2694849_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NC_018587.1_2694849_2698854_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NC_018587.1_2699363_2699843_-	NA	NA|131aa|down_5|NC_018587.1_2700066_2700459_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NC_018587.1_2700480_2700918_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NC_018587.1_2701112_2701859_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NC_018587.1_2701864_2702662_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NC_018587.1_2702664_2703531_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
