assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	1	842912-843105	1	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	GCTCGCCGCGGTTCCGGGCGTCG	23	0	0	NA	NA	NA	3	3	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA,NA|55aa|down_0|NC_015312.1_843578_843743_+	NA|302aa|up_9|NC_015312.1_830354_831260_+	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|553aa|up_8|NC_015312.1_831538_833197_-	pfam12810, Gly_rich, Glycine rich protein	NA|216aa|up_7|NC_015312.1_833371_834019_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|385aa|up_6|NC_015312.1_834041_835196_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|298aa|up_5|NC_015312.1_835262_836156_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|234aa|up_4|NC_015312.1_836207_836909_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|488aa|up_3|NC_015312.1_836905_838369_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|388aa|up_2|NC_015312.1_839195_840359_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|194aa|up_1|NC_015312.1_840355_840937_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|337aa|up_0|NC_015312.1_841109_842120_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|55aa|down_0|NC_015312.1_843578_843743_+	NA	NA|302aa|down_1|NC_015312.1_844244_845150_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|289aa|down_2|NC_015312.1_845220_846087_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|143aa|down_3|NC_015312.1_846093_846522_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|225aa|down_4|NC_015312.1_846539_847214_-	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|120aa|down_5|NC_015312.1_847324_847684_-	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown]	NA|201aa|down_6|NC_015312.1_847763_848366_-	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|299aa|down_7|NC_015312.1_848402_849299_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|409aa|down_8|NC_015312.1_849305_850532_+	cd00887, MoeA, MoeA family	NA|223aa|down_9|NC_015312.1_850541_851210_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	2	3653482-3653608	2	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	CGGGCGCGGTCGGGTACACGGCGC	24	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA|132aa|up_4|NC_015312.1_3649807_3650203_+,NA	NA|371aa|up_9|NC_015312.1_3643581_3644694_+	PRK03343, PRK03343, transaldolase; Validated	NA|504aa|up_8|NC_015312.1_3644701_3646213_+	PRK09533, PRK09533, bifunctional transaldolase/phosoglucose isomerase; Validated	NA|520aa|up_7|NC_015312.1_3646308_3647868_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|318aa|up_6|NC_015312.1_3647896_3648850_+	pfam10128, OpcA_G6PD_assem, Glucose-6-phosphate dehydrogenase subunit	NA|261aa|up_5|NC_015312.1_3648898_3649681_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|132aa|up_4|NC_015312.1_3649807_3650203_+	NA	NA|410aa|up_3|NC_015312.1_3650594_3651824_+	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|278aa|up_2|NC_015312.1_3651835_3652669_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|114aa|up_1|NC_015312.1_3652704_3653046_-	pfam13397, RbpA, RNA polymerase-binding protein	NA|78aa|up_0|NC_015312.1_3653089_3653323_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|273aa|down_0|NC_015312.1_3653735_3654554_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|393aa|down_1|NC_015312.1_3654603_3655782_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|338aa|down_2|NC_015312.1_3655778_3656792_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|328aa|down_3|NC_015312.1_3656912_3657896_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|363aa|down_4|NC_015312.1_3657980_3659069_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|286aa|down_5|NC_015312.1_3659100_3659958_-	PRK05416, PRK05416, RNase adapter RapZ	NA|743aa|down_6|NC_015312.1_3659990_3662219_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|236aa|down_7|NC_015312.1_3662355_3663063_+	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|241aa|down_8|NC_015312.1_3663077_3663800_-	TIGR01428, Haloacetate_dehalogenase, 2-haloalkanoic acid dehalogenase, type II	NA|161aa|down_9|NC_015312.1_3665163_3665646_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	3	4041515-4041601	3	CRISPRCasFinder	no	csa3	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Type I-A	CGCGCGCAACCCCGGCGCTCGGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA|111aa|up_9|NC_015312.1_4032736_4033069_-,NA|86aa|up_2|NC_015312.1_4037880_4038138_+,NA	NA|111aa|up_9|NC_015312.1_4032736_4033069_-	NA	NA|406aa|up_8|NC_015312.1_4033183_4034401_-	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|129aa|up_7|NC_015312.1_4034397_4034784_-	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|174aa|up_6|NC_015312.1_4034915_4035437_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|129aa|up_5|NC_015312.1_4035482_4035869_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|400aa|up_4|NC_015312.1_4035914_4037114_+	PRK03858, PRK03858, DNA polymerase IV; Validated	NA|207aa|up_3|NC_015312.1_4037170_4037791_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|86aa|up_2|NC_015312.1_4037880_4038138_+	NA	NA|419aa|up_1|NC_015312.1_4038205_4039462_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|538aa|up_0|NC_015312.1_4039613_4041227_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|96aa|down_0|NC_015312.1_4041751_4042039_-	PRK02888, PRK02888, nitrous-oxide reductase; Validated	NA|681aa|down_1|NC_015312.1_4042193_4044236_-	PRK02628, nadE, NAD synthetase; Reviewed	NA|201aa|down_2|NC_015312.1_4044377_4044980_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|285aa|down_3|NC_015312.1_4044995_4045850_-	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|291aa|down_4|NC_015312.1_4045956_4046829_-	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|407aa|down_5|NC_015312.1_4047044_4048265_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|374aa|down_6|NC_015312.1_4048287_4049409_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|505aa|down_7|NC_015312.1_4049532_4051047_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|155aa|down_8|NC_015312.1_4051145_4051610_+	pfam13474, SnoaL_3, SnoaL-like domain	NA|440aa|down_9|NC_015312.1_4051629_4052949_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	4	4460828-4460926	4	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	GTGCCGCAGTGCCCGCAGAACCGG	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA,NA|57aa|down_6|NC_015312.1_4469130_4469301_-	NA|417aa|up_9|NC_015312.1_4445541_4446792_+	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|648aa|up_8|NC_015312.1_4446911_4448855_+	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases	NA|614aa|up_7|NC_015312.1_4448869_4450711_+	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases	NA|287aa|up_6|NC_015312.1_4450866_4451727_+	TIGR04027, Luciferase-like_monooxygenase, putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family	NA|197aa|up_5|NC_015312.1_4451792_4452383_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|450aa|up_4|NC_015312.1_4452410_4453760_-	cd18824, GH43_CtGH43-like, Glycosyl hydrolase family 43 protein similar to Clostridium thermocellum exo-beta-1,3-galactanase CtGH43 and Ruminococcus champanellensis arabinanase Ara43A	NA|370aa|up_3|NC_015312.1_4453876_4454986_+	cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)	NA|380aa|up_2|NC_015312.1_4454982_4456122_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|993aa|up_1|NC_015312.1_4456485_4459464_+	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|400aa|up_0|NC_015312.1_4459568_4460768_+	PRK07588, PRK07588, FAD-binding domain	NA|138aa|down_0|NC_015312.1_4461523_4461937_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|857aa|down_1|NC_015312.1_4462053_4464624_-	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|207aa|down_2|NC_015312.1_4464647_4465268_-	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|702aa|down_3|NC_015312.1_4465269_4467375_-	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|554aa|down_4|NC_015312.1_4467371_4469033_-	pfam03814, KdpA, Potassium-transporting ATPase A subunit	NA|34aa|down_5|NC_015312.1_4469032_4469134_-	pfam09604, Potass_KdpF, F subunit of K+-transporting ATPase (Potass_KdpF)	NA|57aa|down_6|NC_015312.1_4469130_4469301_-	NA	NA|354aa|down_7|NC_015312.1_4469459_4470521_-	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]	NA|234aa|down_8|NC_015312.1_4470583_4471285_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|455aa|down_9|NC_015312.1_4471542_4472907_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	5	4501412-4501671	1	PILER-CR	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	CCGACGGGCGCAACCTGAGCGTCGCTTTCCCGCCCGGCGACGACAGTGAGGTTGCGCCCGGG	62	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA,NA|90aa|down_2|NC_015312.1_4504934_4505204_-	NA|265aa|up_9|NC_015312.1_4490246_4491041_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|283aa|up_8|NC_015312.1_4491037_4491886_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|561aa|up_7|NC_015312.1_4491882_4493565_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|344aa|up_6|NC_015312.1_4493591_4494623_-	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|545aa|up_5|NC_015312.1_4494619_4496254_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|392aa|up_4|NC_015312.1_4496253_4497429_-	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily	NA|218aa|up_3|NC_015312.1_4497459_4498113_-	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|399aa|up_2|NC_015312.1_4498124_4499321_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|305aa|up_1|NC_015312.1_4499466_4500381_-	cd10977, CE4_PuuE_SpCDA1, Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins	NA|221aa|up_0|NC_015312.1_4500529_4501192_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|300aa|down_0|NC_015312.1_4502484_4503384_+	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|345aa|down_1|NC_015312.1_4503380_4504415_+	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|90aa|down_2|NC_015312.1_4504934_4505204_-	NA	NA|372aa|down_3|NC_015312.1_4505200_4506316_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|290aa|down_4|NC_015312.1_4506337_4507207_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|460aa|down_5|NC_015312.1_4507203_4508583_-	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|958aa|down_6|NC_015312.1_4508579_4511453_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|287aa|down_7|NC_015312.1_4511619_4512480_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|685aa|down_8|NC_015312.1_4512689_4514744_+	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|361aa|down_9|NC_015312.1_4514872_4515955_+	pfam13649, Methyltransf_25, Methyltransferase domain
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	6	5042629-5042715	5	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	CGCAACCTCACCGTCCTGCCCGGCC	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA,NA	NA|259aa|up_9|NC_015312.1_5033204_5033981_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|267aa|up_8|NC_015312.1_5034127_5034928_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|430aa|up_7|NC_015312.1_5034924_5036214_+	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]	NA|280aa|up_6|NC_015312.1_5036144_5036984_+	pfam07103, DUF1365, Protein of unknown function (DUF1365)	NA|439aa|up_5|NC_015312.1_5036920_5038237_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|459aa|up_4|NC_015312.1_5038296_5039673_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|278aa|up_3|NC_015312.1_5039669_5040503_+	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only]	NA|155aa|up_2|NC_015312.1_5040569_5041034_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|194aa|up_1|NC_015312.1_5041095_5041677_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|286aa|up_0|NC_015312.1_5041688_5042546_-	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|134aa|down_0|NC_015312.1_5042863_5043265_-	pfam11255, DUF3054, Protein of unknown function (DUF3054)	NA|618aa|down_1|NC_015312.1_5043329_5045183_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|278aa|down_2|NC_015312.1_5045277_5046111_-	pfam13312, DUF4081, Domain of unknown function (DUF4081)	NA|381aa|down_3|NC_015312.1_5046209_5047352_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|164aa|down_4|NC_015312.1_5047460_5047952_-	cd07502, HAD_PNKP-C, C-terminal phosphatase domain of T4 polynucleotide kinase/phosphatase (PNKP) and related phosphatases	NA|399aa|down_5|NC_015312.1_5047954_5049151_-	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|416aa|down_6|NC_015312.1_5049154_5050402_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|87aa|down_7|NC_015312.1_5050463_5050724_+	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|324aa|down_8|NC_015312.1_5050740_5051712_+	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2	NA|213aa|down_9|NC_015312.1_5051763_5052402_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	7	5125188-5125274	6	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	CCGAGCGCAACCCCACGGTCGCCCC	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA,NA	NA|89aa|up_9|NC_015312.1_5112598_5112865_-	PRK07948, PRK07948, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|183aa|up_8|NC_015312.1_5112861_5113410_-	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|511aa|up_7|NC_015312.1_5113483_5115016_-	PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|150aa|up_6|NC_015312.1_5115012_5115462_-	PRK07946, PRK07946, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|185aa|up_5|NC_015312.1_5115479_5116034_-	PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|788aa|up_4|NC_015312.1_5116030_5118394_-	PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|734aa|up_3|NC_015312.1_5118633_5120835_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|485aa|up_2|NC_015312.1_5121104_5122559_+	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional	NA|389aa|up_1|NC_015312.1_5122603_5123770_+	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional	NA|460aa|up_0|NC_015312.1_5123766_5125146_+	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|197aa|down_0|NC_015312.1_5125368_5125959_+	pfam12867, DinB_2, DinB superfamily	NA|233aa|down_1|NC_015312.1_5126000_5126699_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|484aa|down_2|NC_015312.1_5126856_5128308_+	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional	NA|393aa|down_3|NC_015312.1_5128311_5129490_+	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional	NA|430aa|down_4|NC_015312.1_5129486_5130776_+	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|315aa|down_5|NC_015312.1_5130812_5131757_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|79aa|down_6|NC_015312.1_5131911_5132148_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|192aa|down_7|NC_015312.1_5132153_5132729_+	pfam12028, DUF3515, Protein of unknown function (DUF3515)	NA|366aa|down_8|NC_015312.1_5132746_5133844_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|639aa|down_9|NC_015312.1_5133861_5135778_-	cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	8	5375679-5375765	7	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	GTGAGGTTGCGGCCGGCTGATTGCGCG	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA|189aa|up_7|NC_015312.1_5367530_5368097_+,NA	NA|376aa|up_9|NC_015312.1_5365293_5366421_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|335aa|up_8|NC_015312.1_5366455_5367460_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|189aa|up_7|NC_015312.1_5367530_5368097_+	NA	NA|314aa|up_6|NC_015312.1_5368122_5369064_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|144aa|up_5|NC_015312.1_5369448_5369880_+	pfam06172, Cupin_5, Cupin superfamily (DUF985)	NA|189aa|up_4|NC_015312.1_5369925_5370492_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|341aa|up_3|NC_015312.1_5370517_5371540_-	PRK07945, PRK07945, PHP domain-containing protein	NA|507aa|up_2|NC_015312.1_5371574_5373095_-	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family	NA|491aa|up_1|NC_015312.1_5373133_5374606_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|315aa|up_0|NC_015312.1_5374616_5375561_-	COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]	NA|307aa|down_0|NC_015312.1_5375804_5376725_-	PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional	NA|494aa|down_1|NC_015312.1_5376775_5378257_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|204aa|down_2|NC_015312.1_5378325_5378937_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|249aa|down_3|NC_015312.1_5378960_5379707_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|237aa|down_4|NC_015312.1_5379818_5380529_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|down_5|NC_015312.1_5380525_5382046_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|338aa|down_6|NC_015312.1_5382021_5383035_-	pfam02673, BacA, Bacitracin resistance protein BacA	NA|468aa|down_7|NC_015312.1_5383082_5384486_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|320aa|down_8|NC_015312.1_5384911_5385871_+	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|421aa|down_9|NC_015312.1_5386045_5387308_+	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	9	6162310-6162465	8	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	ACGGTCAAGTTCGCCGACGGCTCG	24	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA|308aa|up_9|NC_015312.1_6154092_6155016_+,NA|105aa|up_8|NC_015312.1_6155015_6155330_+,NA|153aa|up_6|NC_015312.1_6155803_6156262_+,NA|62aa|up_5|NC_015312.1_6156331_6156517_+,NA|165aa|up_4|NC_015312.1_6156520_6157015_+,NA|125aa|up_3|NC_015312.1_6157016_6157391_+,NA|102aa|up_2|NC_015312.1_6157417_6157723_+,NA|137aa|up_1|NC_015312.1_6157823_6158234_+,NA|132aa|up_0|NC_015312.1_6158239_6158635_+,NA|139aa|down_0|NC_015312.1_6163242_6163659_+,NA|555aa|down_1|NC_015312.1_6163662_6165327_+,NA|115aa|down_2|NC_015312.1_6165358_6165703_+,NA|136aa|down_3|NC_015312.1_6165705_6166113_+,NA|106aa|down_7|NC_015312.1_6169647_6169965_+,NA|55aa|down_8|NC_015312.1_6170059_6170224_+,NA|95aa|down_9|NC_015312.1_6170287_6170572_+	NA|308aa|up_9|NC_015312.1_6154092_6155016_+	NA	NA|105aa|up_8|NC_015312.1_6155015_6155330_+	NA	NA|149aa|up_7|NC_015312.1_6155339_6155786_+	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|153aa|up_6|NC_015312.1_6155803_6156262_+	NA	NA|62aa|up_5|NC_015312.1_6156331_6156517_+	NA	NA|165aa|up_4|NC_015312.1_6156520_6157015_+	NA	NA|125aa|up_3|NC_015312.1_6157016_6157391_+	NA	NA|102aa|up_2|NC_015312.1_6157417_6157723_+	NA	NA|137aa|up_1|NC_015312.1_6157823_6158234_+	NA	NA|132aa|up_0|NC_015312.1_6158239_6158635_+	NA	NA|139aa|down_0|NC_015312.1_6163242_6163659_+	NA	NA|555aa|down_1|NC_015312.1_6163662_6165327_+	NA	NA|115aa|down_2|NC_015312.1_6165358_6165703_+	NA	NA|136aa|down_3|NC_015312.1_6165705_6166113_+	NA	NA|829aa|down_4|NC_015312.1_6166160_6168647_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|213aa|down_5|NC_015312.1_6168698_6169337_+	pfam07484, Collar, Phage Tail Collar Domain	NA|100aa|down_6|NC_015312.1_6169333_6169633_+	pfam07484, Collar, Phage Tail Collar Domain	NA|106aa|down_7|NC_015312.1_6169647_6169965_+	NA	NA|55aa|down_8|NC_015312.1_6170059_6170224_+	NA	NA|95aa|down_9|NC_015312.1_6170287_6170572_+	NA
GCF_000196675.1_ASM19667v1	NC_015312	Pseudonocardia dioxanivorans CB1190, complete sequence	10	6892999-6893108	9	CRISPRCasFinder	no		RT,csa3,WYL,cas3,DinG,DEDDh,cas4	Orphan	AGCGTCGGACCGGGCGGAGCGAGGTACGGCGTGAGC	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,cas3,DinG,DEDDh,cas4	NA|85aa|up_3|NC_015312.1_6890335_6890590_-,NA|199aa|down_1|NC_015312.1_6896472_6897069_+	NA|920aa|up_9|NC_015312.1_6882854_6885614_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|297aa|up_8|NC_015312.1_6885639_6886530_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|276aa|up_7|NC_015312.1_6886601_6887429_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|266aa|up_6|NC_015312.1_6887425_6888223_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|415aa|up_5|NC_015312.1_6888233_6889478_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|225aa|up_4|NC_015312.1_6889516_6890191_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|85aa|up_3|NC_015312.1_6890335_6890590_-	NA	NA|275aa|up_2|NC_015312.1_6890742_6891567_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|218aa|up_1|NC_015312.1_6891592_6892246_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|233aa|up_0|NC_015312.1_6892242_6892941_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|427aa|down_0|NC_015312.1_6895009_6896290_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|199aa|down_1|NC_015312.1_6896472_6897069_+	NA	NA|101aa|down_2|NC_015312.1_6897145_6897448_+	PRK13241, ureA, urease subunit gamma; Provisional	NA|126aa|down_3|NC_015312.1_6897447_6897825_+	pfam00699, Urease_beta, Urease beta subunit	NA|571aa|down_4|NC_015312.1_6897821_6899534_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|228aa|down_5|NC_015312.1_6899533_6900217_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|238aa|down_6|NC_015312.1_6900206_6900920_+	cd05540, UreG, urease accessory protein UreG	NA|284aa|down_7|NC_015312.1_6900921_6901773_+	pfam01774, UreD, UreD urease accessory protein	NA|225aa|down_8|NC_015312.1_6901736_6902411_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|138aa|down_9|NC_015312.1_6902633_6903047_-	pfam11349, DUF3151, Protein of unknown function (DUF3151)
