assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000196255.1_ASM19625v1	NC_005871	Photobacterium profundum SS9 plasmid pPBPR1, complete sequence	1	39353-43288	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas8e,cas5,cas7,cse2gr11,cas6e,cas3	cas2,cas1,cas8e,cas5,cas7,cse2gr11,cas6e,cas3	Type I-E	CGGTTCAGCCCCGTGAGTACGGGGAACAC,CGGTTCAGCCCCGTGAGTACGGGGAACAC,CGGTTCAGCCCCGTGAGTACGGGGAACAC,CGGTTCAGCCCCGTGAGTACGGGGAACAC	29,29,29,29	0	0	NA	NA	NA:NA:NA:NA	64,64,63,63	64	TypeI-E	cas3,csa3,DinG,csx1,DEDDh,WYL,RT,cas2,cas6f,cas5,cas7f,cas3f,cas1,cas8e,cas7,cse2gr11,cas6e	NA|145aa|up_9|NC_005871.1_30908_31343_-,NA|65aa|up_8|NC_005871.1_31511_31706_-,NA|56aa|up_7|NC_005871.1_31698_31866_-,NA|116aa|up_3|NC_005871.1_36431_36779_-,NA|161aa|up_1|NC_005871.1_37790_38273_-,NA|76aa|down_9|NC_005871.1_53601_53829_+	NA|145aa|up_9|NC_005871.1_30908_31343_-	NA	NA|65aa|up_8|NC_005871.1_31511_31706_-	NA	NA|56aa|up_7|NC_005871.1_31698_31866_-	NA	NA|326aa|up_6|NC_005871.1_31937_32915_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|397aa|up_5|NC_005871.1_33556_34747_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|362aa|up_4|NC_005871.1_34749_35835_+	pfam08775, ParB, ParB family	NA|116aa|up_3|NC_005871.1_36431_36779_-	NA	NA|266aa|up_2|NC_005871.1_36894_37692_-	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional	NA|161aa|up_1|NC_005871.1_37790_38273_-	NA	NA|194aa|up_0|NC_005871.1_38486_39068_-	pfam11140, DUF2913, Protein of unknown function (DUF2913)	cas2|103aa|down_0|NC_005871.1_43365_43674_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_005871.1_43682_44603_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas8e|491aa|down_2|NC_005871.1_44618_46091_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas5|212aa|down_3|NC_005871.1_46077_46713_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|342aa|down_4|NC_005871.1_46752_47778_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|139aa|down_5|NC_005871.1_47818_48235_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|182aa|down_6|NC_005871.1_48250_48796_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas3|811aa|down_7|NC_005871.1_48840_51273_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|down_8|NC_005871.1_51937_52891_-	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins	NA|76aa|down_9|NC_005871.1_53601_53829_+	NA
GCF_000196255.1_ASM19625v1	NC_006371	Photobacterium profundum SS9 chromosome 2, complete sequence	1	2187866-2189454	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas5,cas7f,cas3f,cas1	DEDDh,cas3,RT,DinG,csa3,cas2,cas6f,cas5,cas7f,cas3f,cas1	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAA	28,28,27	0	0	NA	NA	I-F:I-F:I-F	26,26,26	26	Unclear	cas3,csa3,DinG,csx1,DEDDh,WYL,RT,cas2,cas6f,cas5,cas7f,cas3f,cas1,cas8e,cas7,cse2gr11,cas6e	NA|51aa|up_9|NC_006371.1_2176655_2176808_-,NA|55aa|up_6|NC_006371.1_2180262_2180427_-,NA|255aa|up_0|NC_006371.1_2186900_2187665_-,cas5|337aa|down_1|NC_006371.1_2190144_2191155_-,cas7f|316aa|down_2|NC_006371.1_2191163_2192111_-	NA|51aa|up_9|NC_006371.1_2176655_2176808_-	NA	NA|172aa|up_8|NC_006371.1_2176807_2177323_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|209aa|up_7|NC_006371.1_2178032_2178659_-	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|55aa|up_6|NC_006371.1_2180262_2180427_-	NA	NA|228aa|up_5|NC_006371.1_2180748_2181432_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|310aa|up_4|NC_006371.1_2181739_2182669_-	PRK06860, PRK06860, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|971aa|up_3|NC_006371.1_2183039_2185952_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|93aa|up_2|NC_006371.1_2186060_2186339_+	pfam11746, DUF3303, Protein of unknown function (DUF3303)	NA|69aa|up_1|NC_006371.1_2186590_2186797_-	pfam11686, DUF3283, Protein of unknown function (DUF3283)	NA|255aa|up_0|NC_006371.1_2186900_2187665_-	NA	cas6f|184aa|down_0|NC_006371.1_2189583_2190135_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas5|337aa|down_1|NC_006371.1_2190144_2191155_-	NA	cas7f|316aa|down_2|NC_006371.1_2191163_2192111_-	NA	cas3f|975aa|down_3|NC_006371.1_2192114_2195039_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|332aa|down_4|NC_006371.1_2195035_2196031_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|537aa|down_5|NC_006371.1_2196225_2197836_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|499aa|down_6|NC_006371.1_2198589_2200086_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|232aa|down_7|NC_006371.1_2200248_2200944_-	PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|1042aa|down_8|NC_006371.1_2200978_2204104_-	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|266aa|down_9|NC_006371.1_2204526_2205324_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
GCF_000196255.1_ASM19625v1	NC_006370	Photobacterium profundum SS9 chromosome 1, complete sequence	1	3457153-3457252	1	CRISPRCasFinder	no		cas3,csa3,DinG,csx1,DEDDh,WYL	Orphan	ACTTGAACCACCGACCTCACCCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,csx1,DEDDh,WYL,RT,cas2,cas6f,cas5,cas7f,cas3f,cas1,cas8e,cas7,cse2gr11,cas6e	NA|112aa|up_3|NC_006370.1_3447774_3448110_-,NA|101aa|up_1|NC_006370.1_3449507_3449810_-,NA|126aa|down_1|NC_006370.1_3462241_3462619_+	NA|1160aa|up_9|NC_006370.1_3439530_3443010_-	PRK11069, recC, exodeoxyribonuclease V subunit gamma	NA|326aa|up_8|NC_006370.1_3443206_3444184_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|297aa|up_7|NC_006370.1_3444367_3445258_+	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|229aa|up_6|NC_006370.1_3445275_3445962_-	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	NA|101aa|up_5|NC_006370.1_3446045_3446348_+	pfam07130, YebG, YebG protein	NA|344aa|up_4|NC_006370.1_3446650_3447682_+	TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|112aa|up_3|NC_006370.1_3447774_3448110_-	NA	NA|399aa|up_2|NC_006370.1_3448197_3449394_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|101aa|up_1|NC_006370.1_3449507_3449810_-	NA	NA|345aa|up_0|NC_006370.1_3451876_3452912_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|858aa|down_0|NC_006370.1_3459380_3461954_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|126aa|down_1|NC_006370.1_3462241_3462619_+	NA	NA|251aa|down_2|NC_006370.1_3462737_3463490_-	PRK10723, PRK10723, polyphenol oxidase	NA|325aa|down_3|NC_006370.1_3463491_3464466_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|243aa|down_4|NC_006370.1_3464633_3465362_+	PRK10866, PRK10866, outer membrane protein assembly factor BamD	NA|117aa|down_5|NC_006370.1_3465777_3466128_+	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA	NA|392aa|down_6|NC_006370.1_3466373_3467549_+	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional	NA|376aa|down_7|NC_006370.1_3467616_3468744_-	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional	NA|358aa|down_8|NC_006370.1_3468906_3469980_-	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|573aa|down_9|NC_006370.1_3470224_3471943_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]
GCF_000196255.1_ASM19625v1	NC_006370	Photobacterium profundum SS9 chromosome 1, complete sequence	2	3541979-3542057	2	CRISPRCasFinder	no		cas3,csa3,DinG,csx1,DEDDh,WYL	Orphan	GCTCTGCATCTTCTTCTCAATCTTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,csx1,DEDDh,WYL,RT,cas2,cas6f,cas5,cas7f,cas3f,cas1,cas8e,cas7,cse2gr11,cas6e	NA|140aa|up_3|NC_006370.1_3538788_3539208_-,NA|140aa|down_4|NC_006370.1_3549039_3549459_+	NA|598aa|up_9|NC_006370.1_3531551_3533345_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|166aa|up_8|NC_006370.1_3533421_3533919_-	COG3086, RseC, Positive regulator of sigma E activity [Signal transduction mechanisms]	NA|332aa|up_7|NC_006370.1_3533915_3534911_-	PRK09455, rseB, anti-sigma E factor; Provisional	NA|233aa|up_6|NC_006370.1_3534910_3535609_-	PRK10863, PRK10863, anti-sigma-E factor RseA	NA|193aa|up_5|NC_006370.1_3535633_3536212_-	TIGR02939, Sigma_factor_ECF_subfamily, RNA polymerase sigma factor RpoE	NA|541aa|up_4|NC_006370.1_3537051_3538674_+	PRK09077, PRK09077, L-aspartate oxidase; Provisional	NA|140aa|up_3|NC_006370.1_3538788_3539208_-	NA	NA|87aa|up_2|NC_006370.1_3539176_3539437_-	COG2938, COG2938, Uncharacterized conserved protein [Function unknown]	NA|330aa|up_1|NC_006370.1_3539792_3540782_+	PRK09559, PRK09559, putative global regulator; Reviewed	NA|154aa|up_0|NC_006370.1_3540783_3541245_+	cd04332, YbaK_like, YbaK-like	NA|237aa|down_0|NC_006370.1_3543545_3544256_+	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH	NA|205aa|down_1|NC_006370.1_3544252_3544867_+	pfam00330, Aconitase, Aconitase family (aconitate hydratase)	NA|429aa|down_2|NC_006370.1_3545443_3546730_+	PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional	NA|482aa|down_3|NC_006370.1_3547418_3548863_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|140aa|down_4|NC_006370.1_3549039_3549459_+	NA	NA|320aa|down_5|NC_006370.1_3549603_3550563_+	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|65aa|down_6|NC_006370.1_3550707_3550902_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|159aa|down_7|NC_006370.1_3550898_3551375_-	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|126aa|down_8|NC_006370.1_3551376_3551754_-	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only]	NA|68aa|down_9|NC_006370.1_3552239_3552443_+	pfam06526, DUF1107, Protein of unknown function (DUF1107)
