assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000196075.1_ASM19607v1	NC_004551	Tropheryma whipplei TW08/27, complete genome	1	192433-192620	1	PILER-CR	no		csa3,DEDDh	Orphan	AACCCCGCCGTGTTACATGTAACGCAC	27	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh	NA|73aa|up_5|NC_004551.1_186024_186243_+,NA|193aa|up_4|NC_004551.1_187186_187765_+,NA|52aa|up_2|NC_004551.1_189287_189443_+,NA|69aa|down_6|NC_004551.1_205092_205299_+	NA|155aa|up_9|NC_004551.1_178712_179177_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|454aa|up_8|NC_004551.1_179180_180542_+	PRK14318, glmM, phosphoglucosamine mutase; Provisional	NA|252aa|up_7|NC_004551.1_180516_181272_-	cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway	NA|617aa|up_6|NC_004551.1_184177_186028_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|73aa|up_5|NC_004551.1_186024_186243_+	NA	NA|193aa|up_4|NC_004551.1_187186_187765_+	NA	NA|410aa|up_3|NC_004551.1_187877_189107_-	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|52aa|up_2|NC_004551.1_189287_189443_+	NA	NA|96aa|up_1|NC_004551.1_189944_190232_+	pfam05345, He_PIG, Putative Ig domain	NA|365aa|up_0|NC_004551.1_191187_192282_+	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family	NA|797aa|down_0|NC_004551.1_193768_196159_+	pfam07861, WND, WisP family N-Terminal Region	NA|92aa|down_1|NC_004551.1_196752_197028_+	pfam05345, He_PIG, Putative Ig domain	NA|590aa|down_2|NC_004551.1_197696_199466_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|624aa|down_3|NC_004551.1_199446_201318_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|233aa|down_4|NC_004551.1_202541_203240_-	pfam13829, DUF4191, Domain of unknown function (DUF4191)	NA|399aa|down_5|NC_004551.1_203334_204531_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|69aa|down_6|NC_004551.1_205092_205299_+	NA	NA|615aa|down_7|NC_004551.1_205327_207172_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|135aa|down_8|NC_004551.1_207134_207539_+	cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)	NA|281aa|down_9|NC_004551.1_207487_208330_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE
GCF_000196075.1_ASM19607v1	NC_004551	Tropheryma whipplei TW08/27, complete genome	2	624698-624790	1	CRISPRCasFinder	no		csa3,DEDDh	Orphan	ACTGCCCGTCACTGTGTTGTCTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh	NA|81aa|up_3|NC_004551.1_611765_612008_-,NA|57aa|down_4|NC_004551.1_635634_635805_-,NA|81aa|down_5|NC_004551.1_636630_636873_-,NA|72aa|down_6|NC_004551.1_636917_637133_-,NA|141aa|down_9|NC_004551.1_639440_639863_-	NA|362aa|up_9|NC_004551.1_602110_603196_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|334aa|up_8|NC_004551.1_603296_604298_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|81aa|up_7|NC_004551.1_604366_604609_-	cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)	NA|582aa|up_6|NC_004551.1_604601_606347_-	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated	NA|568aa|up_5|NC_004551.1_606391_608095_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|89aa|up_4|NC_004551.1_609190_609457_-	pfam05345, He_PIG, Putative Ig domain	NA|81aa|up_3|NC_004551.1_611765_612008_-	NA	NA|419aa|up_2|NC_004551.1_616651_617908_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|212aa|up_1|NC_004551.1_623080_623716_-	pfam01668, SmpB, SmpB protein	NA|304aa|up_0|NC_004551.1_623727_624639_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|377aa|down_0|NC_004551.1_627147_628278_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|391aa|down_1|NC_004551.1_628350_629523_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|91aa|down_2|NC_004551.1_632446_632719_-	pfam05345, He_PIG, Putative Ig domain	NA|407aa|down_3|NC_004551.1_634417_635638_-	PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional	NA|57aa|down_4|NC_004551.1_635634_635805_-	NA	NA|81aa|down_5|NC_004551.1_636630_636873_-	NA	NA|72aa|down_6|NC_004551.1_636917_637133_-	NA	NA|120aa|down_7|NC_004551.1_637679_638039_-	pfam05345, He_PIG, Putative Ig domain	NA|143aa|down_8|NC_004551.1_638683_639112_-	pfam05345, He_PIG, Putative Ig domain	NA|141aa|down_9|NC_004551.1_639440_639863_-	NA
