The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	303017	344119	3928089	transposase,integrase,protease,tRNA	Tupanvirus(14.29%)	37	312076:312093	345889:345906
WP_011515176.1|303017_303614_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_011515177.1|303788_304400_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_008650936.1|304570_305524_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	33.8	2.4e-41
WP_011515178.1|305763_306642_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_011515179.1|306638_307253_-	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_011515180.1|307338_309246_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011515181.1|309516_310410_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_029306757.1|310742_312686_+	GTPase	NA	NA	NA	NA	NA
312076:312093	attL	CGATGCGCGATGCGCGCG	NA	NA	NA	NA
WP_029306756.1|312816_313968_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_011515184.1|313989_314643_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
WP_011515185.1|314689_315580_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	37.4	1.1e-08
WP_017511023.1|315694_316036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008650955.1|316241_317213_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_017511024.1|317281_317737_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_008650960.1|318213_318567_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_011515189.1|318617_320096_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_011515190.1|320219_321011_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.0	2.5e-20
WP_011515191.1|321036_321681_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_011515192.1|321743_322370_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_011515193.1|322373_323357_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	33.7	2.0e-35
WP_029306755.1|323507_325487_+	potassium transporter	NA	NA	NA	NA	NA
WP_011515195.1|325476_325905_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011515196.1|325963_326593_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_011515197.1|326668_327241_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.5	1.6e-29
WP_011515198.1|327520_329197_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_011515199.1|329250_332118_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.8	6.2e-303
WP_011515200.1|332392_333649_+	MFS transporter	NA	NA	NA	NA	NA
WP_011515201.1|333924_334470_+	single-stranded DNA-binding protein	NA	C5IHK5	Burkholderia_virus	85.3	2.3e-49
WP_011515202.1|334702_335569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011515203.1|335756_336953_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_029310226.1|336949_337462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008651547.1|337640_337913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008651548.1|337909_338743_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651549.1|338739_340179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_124682078.1|340290_340836_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049799649.1|340995_342111_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_152560155.1|342421_344119_+|integrase	integrase	integrase	NA	NA	NA	NA
345889:345906	attR	CGCGCGCATCGCGCATCG	NA	NA	NA	NA
>prophage 2
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	803083	811926	3928089		Bacillus_phage(16.67%)	8	NA	NA
WP_011515573.1|803083_804457_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	35.4	3.5e-70
WP_011515574.1|804536_805481_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	27.5	3.8e-15
WP_011515575.1|805507_806503_+	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	33.4	3.1e-28
WP_011515576.1|806712_807093_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011515577.1|807190_808639_+	nitrate reductase	NA	Q9KX94	Enterobacteria_phage	64.4	1.3e-144
WP_029309853.1|808749_809652_+	cysteine synthase CysM	NA	C3U2M1	Lactococcus_phage	41.2	8.2e-52
WP_029308328.1|809731_810838_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_008643671.1|811002_811926_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	33.3	1.6e-39
>prophage 3
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	1334904	1426241	3928089	transposase,integrase,tRNA	Bacillus_phage(11.11%)	85	1341162:1341178	1416185:1416200
WP_011515992.1|1334904_1335654_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_008652183.1|1335713_1336298_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_011515993.1|1336647_1337310_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_011515994.1|1337371_1337761_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_011515995.1|1337866_1339114_-	benzoyl-CoA 2,3-epoxidase subunit BoxA	NA	NA	NA	NA	NA
WP_011515996.1|1339140_1340565_-	benzoyl-CoA 2,3-epoxidase subunit BoxB	NA	NA	NA	NA	NA
WP_011515997.1|1340606_1342283_-	benzoyl-CoA-dihydrodiol lyase	NA	NA	NA	NA	NA
1341162:1341178	attL	ATCCAGGCGCGCCAGCG	NA	NA	NA	NA
WP_011515998.1|1342403_1343354_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
1341162:1341178	attL	ATCCAGGCGCGCCAGCG	NA	NA	NA	NA
WP_011515999.1|1343602_1345252_+	benzoate-CoA ligase family protein	NA	A0A2K9KZV5	Tupanvirus	21.6	1.1e-12
WP_011516000.1|1345253_1346069_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011516001.1|1346154_1347348_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_008652164.1|1347373_1348240_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011516002.1|1348255_1349320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011516003.1|1349316_1350084_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.3	2.8e-16
WP_008646845.1|1350080_1350797_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.0	5.6e-11
WP_008646843.1|1351168_1353067_+	potassium transporter Kup	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	29.8	6.5e-59
WP_011516006.1|1353159_1355523_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_011516007.1|1355700_1356477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008646837.1|1356534_1356738_+	DUF465 domain-containing protein	NA	NA	NA	NA	NA
WP_035822143.1|1356817_1359010_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.4	3.0e-84
WP_011516010.1|1359444_1360644_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011516011.1|1360640_1361717_+	DUF1016 domain-containing protein	NA	A0A0U2BZN7	Salmonella_phage	39.7	1.8e-21
WP_011516012.1|1362582_1363842_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011516013.1|1363838_1364831_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011516014.1|1364827_1365838_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	28.3	2.9e-21
WP_011516015.1|1366464_1366857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041240053.1|1367565_1368390_+	DUF945 domain-containing protein	NA	K4F5L3	Cronobacter_phage	40.9	1.8e-42
WP_011516017.1|1368468_1370520_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011516018.1|1370727_1371246_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_041240055.1|1372073_1372388_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_011516021.1|1372452_1372758_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_021161698.1|1373001_1373352_+	DUF2958 domain-containing protein	NA	NA	NA	NA	NA
WP_011516023.1|1373578_1374580_-|transposase	IS481-like element ISRme14 family transposase	transposase	NA	NA	NA	NA
WP_021161697.1|1374706_1375468_+	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
WP_003107109.1|1375551_1375833_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011516026.1|1375859_1376717_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_011516027.1|1376970_1377609_+	AAA family ATPase	NA	B0ZSI1	Halomonas_phage	40.1	3.3e-31
WP_011516028.1|1377605_1377878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516029.1|1377874_1378408_+	DUF2840 domain-containing protein	NA	NA	NA	NA	NA
WP_011516030.1|1378404_1378992_+	peptidase	NA	NA	NA	NA	NA
WP_041240063.1|1379428_1381414_+	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_029310270.1|1381451_1381925_-	cytochrome c	NA	NA	NA	NA	NA
WP_011516033.1|1381973_1383101_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA	NA
WP_011515352.1|1383233_1384484_-|transposase	IS256-like element IS1090 family transposase	transposase	A0A218MNI5	uncultured_virus	42.8	4.0e-41
WP_011516034.1|1384633_1385440_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	57.5	4.6e-78
WP_011516035.1|1385439_1386450_-|transposase	IS21-like element ISRme20 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	49.4	8.2e-85
WP_011516036.1|1386617_1387484_-	TIGR00730 family Rossman fold protein	NA	A0A1D8KU27	Synechococcus_phage	32.4	2.3e-11
WP_011516037.1|1387483_1388893_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010792188.1|1388900_1389104_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_011516038.1|1389123_1390662_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
1389872:1389888	attR	CGCTGGCGCGCCTGGAT	NA	NA	NA	NA
WP_011516039.1|1390658_1391777_-	ABC transporter permease	NA	NA	NA	NA	NA
1389872:1389888	attR	CGCTGGCGCGCCTGGAT	NA	NA	NA	NA
WP_011516040.1|1391781_1392951_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011516041.1|1393468_1394701_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	4.3e-11
WP_011516042.1|1394697_1395645_+|integrase	tyrosine-type recombinase/integrase	integrase	U3PCM7	Lactobacillus_phage	27.5	3.5e-05
WP_011516043.1|1395641_1396637_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D2W391	Mycobacterium_phage	25.5	4.0e-07
WP_049799681.1|1396400_1398221_-|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	35.1	8.0e-46
WP_080710364.1|1398243_1398606_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_029309997.1|1398602_1398920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152560238.1|1399237_1399627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516048.1|1401176_1402289_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_011516049.1|1402285_1403449_-	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011516050.1|1403457_1403685_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011516051.1|1403675_1404815_-	carbamoyltransferase HypF	NA	NA	NA	NA	NA
WP_011516052.1|1404828_1405866_-	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA	NA
WP_011516053.1|1405889_1406237_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_152560294.1|1406229_1407441_-	hydrogenase formation protein	NA	NA	NA	NA	NA
WP_029310280.1|1407412_1407898_-	[NiFe]-hydrogenase assembly chaperone HybE	NA	NA	NA	NA	NA
WP_011516056.1|1407890_1408121_-	rubredoxin	NA	NA	NA	NA	NA
WP_011516057.1|1408126_1408990_-	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_011516058.1|1409021_1409471_-	hydrogenase	NA	NA	NA	NA	NA
WP_011516059.1|1409486_1409789_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011516060.1|1409790_1410456_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA	NA
WP_080710402.1|1410477_1410825_-	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	42.0	6.9e-07
WP_011516062.1|1410944_1411676_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_049799686.1|1411713_1412316_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_011516064.1|1412447_1414307_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_011516065.1|1414327_1415422_-	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_029310277.1|1415596_1415956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516068.1|1416783_1417749_+|transposase	IS481-like element ISRme14 family transposase	transposase	NA	NA	NA	NA
WP_080710382.1|1418612_1419044_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011516070.1|1419137_1420982_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_011516071.1|1421154_1421985_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_049799775.1|1422720_1424049_-	aromatic hydrocarbon degradation protein	NA	NA	NA	NA	NA
WP_011516074.1|1424193_1425255_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_085960479.1|1425424_1426241_+|transposase	IS5-like element ISRme6 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	1611194	1668018	3928089	protease,transposase	uncultured_virus(33.33%)	49	NA	NA
WP_003049965.1|1611194_1614110_+|transposase	Tn3-like element IS1071 family transposase	transposase	NA	NA	NA	NA
WP_011516241.1|1614222_1615083_-	class II fructose-bisphosphate aldolase family protein	NA	NA	NA	NA	NA
WP_011516242.1|1615993_1616368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516243.1|1616383_1616680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011516244.1|1616688_1619046_-	nitric oxide reductase activation protein NorD	NA	NA	NA	NA	NA
WP_011516245.1|1619058_1619862_-	CbbQ/NirQ/NorQ/GpvN family protein	NA	NA	NA	NA	NA
WP_011516246.1|1620011_1620368_-	ribulose bisphosphate carboxylase small subunit	NA	NA	NA	NA	NA
WP_011516247.1|1620445_1621867_-	form I ribulose bisphosphate carboxylase large subunit	NA	NA	NA	NA	NA
WP_011516248.1|1621991_1622873_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011515352.1|1623051_1624302_+|transposase	IS256-like element IS1090 family transposase	transposase	A0A218MNI5	uncultured_virus	42.8	4.0e-41
WP_003049965.1|1625590_1628506_-|transposase	Tn3-like element IS1071 family transposase	transposase	NA	NA	NA	NA
WP_011516252.1|1629951_1630875_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155877857.1|1630980_1631145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516253.1|1631162_1631861_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_155877856.1|1631870_1632014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516254.1|1632040_1633138_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	34.5	6.7e-48
WP_011516255.1|1633170_1634055_+	phosphoribulokinase	NA	NA	NA	NA	NA
WP_011516256.1|1634054_1636109_+	transketolase	NA	NA	NA	NA	NA
WP_011516257.1|1636110_1636842_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_011516258.1|1636838_1637846_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_011516259.1|1637842_1639033_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_011516260.1|1639029_1639848_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_011516261.1|1639907_1640945_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_011516262.1|1640959_1642378_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_011516263.1|1642413_1643232_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_011516264.1|1643231_1643891_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_011516265.1|1644016_1645825_+	NADP oxidoreductase	NA	NA	NA	NA	NA
WP_011516266.1|1645821_1646532_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_041240501.1|1646582_1647158_+	NADP oxidoreductase	NA	NA	NA	NA	NA
WP_011516268.1|1647175_1648642_+	Ni/Fe hydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_110070725.1|1648652_1649132_+|protease	hydrogenase maturation protease	protease	NA	NA	NA	NA
WP_011516270.1|1649144_1649648_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_082219896.1|1649657_1649789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516271.1|1650746_1651775_-|transposase	IS30-like element IS1088 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.6	3.0e-42
WP_041240119.1|1652236_1652542_+	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_011516272.1|1652538_1653912_+	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA	NA
WP_011516273.1|1653973_1654810_+	nickel transporter	NA	NA	NA	NA	NA
WP_041240122.1|1654909_1655209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_146209070.1|1655199_1655568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516275.1|1655560_1655902_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_011516276.1|1655935_1656916_+	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA	NA
WP_011516277.1|1656929_1659287_+	carbamoyltransferase HypF	NA	NA	NA	NA	NA
WP_041240127.1|1659291_1659528_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011516279.1|1659524_1660667_+	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011516280.1|1660740_1661790_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_011516281.1|1661888_1663628_+	hydrogenase maturation protein	NA	NA	NA	NA	NA
WP_011516282.1|1663624_1664554_+	response regulator	NA	NA	NA	NA	NA
WP_157139102.1|1664543_1664885_-	Dabb family protein	NA	NA	NA	NA	NA
WP_003049965.1|1665102_1668018_+|transposase	Tn3-like element IS1071 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	2162058	2175276	3928089	transposase,integrase,tRNA	Pseudomonas_phage(50.0%)	16	2168337:2168396	2178054:2181521
WP_011516711.1|2162058_2163114_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_029307598.1|2163680_2164088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085959070.1|2164458_2165656_+|transposase	IS3-like element IS1087B family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	61.9	6.5e-97
WP_152560283.1|2165672_2165960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516719.1|2166476_2166923_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA	NA
WP_029310228.1|2167505_2168345_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	NA	NA	NA	NA
2168337:2168396	attL	TGTGCGTGAGCACGAGATTCGATGGATGCGCGAGCACGGTAATTGATGGTCGGCTGCGGC	NA	NA	NA	NA
WP_008651547.1|2168523_2168796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008651548.1|2168792_2169626_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651549.1|2169622_2171062_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_124682078.1|2171173_2171719_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_157139104.1|2171805_2172324_+|integrase	tyrosine-type recombinase/integrase	integrase	K7PHM9	Enterobacterial_phage	37.3	2.9e-17
WP_011516721.1|2172320_2172926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029310384.1|2173105_2173426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516723.1|2173433_2173736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011516724.1|2173738_2174605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124682078.1|2174730_2175276_+|transposase	transposase	transposase	NA	NA	NA	NA
2178054:2181521	attR	GCCGCAGCCGACCATCAATTACCGTGCTCGCGCATCCATCGAATCTCGTGCTCACGCACACCGGCTCGCCCTACCTTGCAAGCCGCCCTGAAGCCGTAGAGCGCTGGAACCGCTTTGCGGCTCGTCCGGCTGGCGGGAGCCTGCAATGACCGCGCGCCTGCCTCACGTCTTCCCCGGCACCCCCGCTATCACAACGCTGCTGCGGCAGGGTCATGCATGGATGGACCGCCTTGCCGCGCTTGAAGGCTGGTCCGCCGTCCTGCTGGCCGATTTGCATGACCGCCTGCGCCGGCAGCCCGCCGCGACCGTGGCCGACACCGTAGAGCATTTCCGCCATCGCCTGAACGACGCGGAGGAACGCGAGCGGGAGCGCTTGCGCGCCGTGCGTCCGTCCGTGGGCTGGTGTCCTGGCTGCCACGGTGAATGCGTGGGCACGCACAGAAGCTGTATGCCGGGCTATGGCGTTGCGCCACCCAGTCCCATCCCGGAAGTGCCGCAGCGCGTGGAGCCCCAGCCCATTGCAAGCCCGACTCGCCCTCGCTATCAGCGCAAGCCGCGCGGACTGGCGCGGCACCTCGGCCATGTCACCGCACCGGGGTGCAAGGAAAACATAGAGGAGCCATGACCATGAAAGTGCAAAACGCGGGAGGGCCACGACGCATGGCCGGGCTATCCCGCCTGAAGCCAAAACGCAGCGGCACGGCGCCGCGCAACACAACGGAGGTGCGGATATGGACGACGACACGTTAGGGGCGGGCCTGCATCTCGCGTGGCCCACAGCGGAGGGCTACCGGCATTTCATGGTGGCGGTGTTGGGCGCGGATGGAAAGGCCGCCGATTACGTGATGGTGGGCGCGTCACGCCCGGACCTGCCGGCGCTAGCGCAACGGTATCTATCGGGTGCGCGGGAATTTGACGATGCGACGCGCCGGGATATGGAGCGCTGGCTAGGACAGTCCATTGAATCGGCCATTGCGGCGGCGCTCGAAACCTGCATTCGCAATCTGTCCACGCTGACCGTGGGTGACATTAGCGCCAAGGCCAGTCGGCCCCGGGGCGACTCAAAGGGAGGTATGGGAAATGTTTGAACACATGAGCGCGGAGCAAACGGCGGAAGTAATTCACCAGTGCATTGACATGCGACTGAAGGGGCCATTTCAACAAGTGGCCGAGGCATTCAAGGCCCGGGACGCCAAGCGCACCGAGGATATGGCCGCGCTACGGCAGGAGCTAGCCGCACTGCGTGGCGAGGTGCGCGCACTGAAAGCCGAGCGGCGCCGGGCCGATGCGTTGGGCGCCGAGGCCGAGCGCTGCGAACTGGTCCGCCGCGAGGCGCAGGCCGCCGAGTCCCGGCTATCGCGCCGGCAATGACGAGGGAGGGCACACCATGGACATCAAATCCGACAGCGTAGCCCGCCGCATCGAGGCCGCCCGCGCGGCCCGGCTTGCGCAAACCGAAGTCAGTAGCCGTGCCCTGCTGGTGCGGTGCTGGGCCGGCGAGGCCTCGCCCCGGCAGGCCATCAAGGCATTCTGCGTCGCCTGTGTCGGCGGCACCCGCGCCGAGGTGACGCGCTGCACCTGCTATGCCTGCCCCCTCTACGAGTTCCGACCGTTCAAAACCGCGCGAGAGGACGGGATTTTGGAGCTAAAAGCGCCGGAAGCGGACCCGGGCATGGCTGAGTAGCCCCGAGCCGTGGAAACGCAATCCAGCGCCGCCCCTCGGCGCCTCAAGCCAAGGGGCGATAGCTTCACAAGTGGGGGGGCGGGTCGAGAAATCGACACCTGTCGCCCACCGCGTACGCGATATCCGCGCGTGGGTAAATCACAAAAATTGGCCCGGGTAAATTTTGGGCCACAAAAAATCCGGCGGAGGGCGGGATAGCCGGGTTGAGGGTGGGTCAGGCGGGGATGCCGGCGGGATGGGCCGCCGGTTCGCCCGCCGATGCTGGGAGTGTCACCGGTATTGCTGCGGCATTCCTTATATATGGAATCGGCATCGGATAGAACTAGAAAAATGACTTGGTAAATGCCGATTTATTTCTAAATGAATTGGAGAAAATCATGTCTGCATCTACGGAAATTTCCGCCTTGGAAGCCCAGCGGGGCGCGAAACTGGAAATCATGGAAGGCTTGCACCAGCGCGCCGCCGACGAGGGCCGGCCCTTTACTGCCGAAGAGGACGCCCGCTTTGAGTCCGGTGCGCGCGAGGTGGAGAGCATCGACCTGAGGCTGGCCCCGCTGCGCCGGAGCCAGGAATTGGCGGCGTATCATGCGGTGCCGGTGGTTCCGGGCTTTTCGCAGCCGCACGCCCGCGAGCCGGTGGGCCTCGCCCAGCCCGAGCGGGAGGACAAGCGCGGCTTGTCTTTTGCGCGCTATGCGATGGCGCTTGCCGCCGGCAAGGGCAATCTGTCCCAATCGTTGGAATTTGCCCGCCACGCCTACGGGCGAAGCAACCCGGAGCTAGTCTCCATCATCAAGGCGGCAGTCAGTGCCGGCACTACCACGGACCCGCAGTGGGCCGGCTCTTTGGTCTACTACCAGAACATGGCCGACGAATTTATCGACCTGCTACGGCCTGCCACCATCATTGGCAGGATGACCGGATTCCGCCGGGTGCCCTTTGCCGTCAGGATTCCGCGCCAAACGGCGGGGGCCTCTGTTGGGTGGGTGGGTGAAGGGGCGGCCAAGCCGGTTAGCAAACTGGCCTTTGACGCCATCAGCATACCGTTTAGCAAAATCGCGGGCATCGTCGCAATCACCGAAGAGCTAGCAAGGTATTCCGCCCCGAGCGCCGAGGCCTTGGTGCGCGATGACCTCGTGGCGACCATTAGCCAGTTTATGGACGTGCAGTTTATCGACCCGTCCATCGCGGCAAATCCGGCGGCCGATAGCCCGGCCTCCATTACCCACGGCGCGCAAACCATCCCGAGTAGCGGCGCGACCGTTGACAATGTGGCGGACGATTTGAGCACGATGCTGTCCGCCGTGGTCGTCAATGGGTTCCCGCTGCGCGGCCTCGCCTGGGTGATGAACAGCCGCACGAAAATCAGCCTGTCAAATTTGCGCAATGCCATGGGCGTATATGCCTATCCCACGCTGGCGGCAAACGGGACATTGCTGGGCTATCCGGTGATTGACTCCGCCTCGGTGCCCATCACCGCCGGCACCCCGCCCACCACGTTTATTGCGCTGGTGGTGCCCGGGGAAATCCTGCTAGCCGACGATGGGGGCGTGACGCTGGATAGCTCGCGCGAGGCCGCGCTCGCCATGAGTGACGATGGCACCGGCGCCCTCGTCAGCCTGTGGCAAAACAACCTCGTTGGCATCCGGGCGGAGCGCTTCTGCCATTGGCTGCGCCGCCGCGAAGGCTGCGTGGTGGTGCTGACAGGCGTGGAATATTAAGGGGTGTACGGGTGCGCGGCCCTATCCGCGCGGCGGGCTAGCCGGTGACTCCCGCTCTCTTGAATA	NA	NA	NA	NA
>prophage 6
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	3085379	3149401	3928089	tRNA,integrase,protease,transposase	Staphylococcus_phage(11.76%)	51	3074074:3074089	3116369:3116384
3074074:3074089	attL	GCGGGAACGTCAGCGG	NA	NA	NA	NA
WP_008651549.1|3085379_3086819_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_124682078.1|3086930_3087476_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_029310335.1|3087566_3088193_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_011517401.1|3088189_3088540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011239917.1|3089496_3090516_-|transposase	IS30-like element IS1086 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.4	4.9e-45
WP_011517403.1|3090664_3091069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011517406.1|3095087_3095672_-	exonuclease domain-containing protein	NA	A0A1V0SGV7	Hokovirus	26.0	2.8e-05
WP_157139111.1|3095668_3096700_-|integrase	tyrosine-type recombinase/integrase	integrase	W6MYA3	Pseudomonas_phage	37.8	1.8e-42
WP_011517408.1|3097334_3098084_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_008644124.1|3098203_3099019_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_011517409.1|3099068_3100478_-	formimidoylglutamate deiminase	NA	NA	NA	NA	NA
WP_011517410.1|3100474_3101722_-	imidazolonepropionase	NA	NA	NA	NA	NA
WP_011517411.1|3101718_3102294_-	HutD family protein	NA	NA	NA	NA	NA
WP_011517412.1|3102290_3103997_-	urocanate hydratase	NA	NA	NA	NA	NA
WP_011517413.1|3104065_3105634_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	35.0	3.0e-65
WP_011517414.1|3105743_3106511_-	histidine utilization repressor	NA	NA	NA	NA	NA
WP_008644773.1|3106515_3107295_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.8	9.3e-36
WP_011517415.1|3107291_3108167_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	30.0	6.8e-27
WP_011517416.1|3108183_3109137_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029310124.1|3109466_3110492_-	sugar nucleotide-binding protein	NA	NA	NA	NA	NA
WP_011517418.1|3110502_3111558_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	A0A1D8KP97	Synechococcus_phage	37.8	5.0e-08
WP_008644896.1|3111835_3113023_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.8	3.7e-28
WP_011517419.1|3113135_3113852_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	4.9e-15
WP_011517420.1|3113868_3114645_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.6	1.9e-17
WP_008644903.1|3114658_3115813_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_008644904.1|3115826_3116762_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
3116369:3116384	attR	GCGGGAACGTCAGCGG	NA	NA	NA	NA
WP_011517421.1|3116979_3118185_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011517422.1|3118859_3119852_-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_008644907.1|3119851_3120343_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_008644908.1|3120725_3120959_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_008644909.1|3120972_3121143_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011517424.1|3121324_3122932_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_011517425.1|3122959_3123823_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
WP_011517426.1|3123819_3124974_-	quinolinate synthase NadA	NA	NA	NA	NA	NA
WP_029310125.1|3125115_3126306_-	aminotransferase	NA	NA	NA	NA	NA
WP_011517428.1|3126601_3127972_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_011517429.1|3127971_3129372_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_011517430.1|3129368_3130031_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.6	4.1e-24
WP_011517431.1|3130317_3131526_+|transposase	IS4-like element ISBvi1 family transposase	transposase	NA	NA	NA	NA
WP_011517433.1|3131732_3132392_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_085960482.1|3132457_3134248_-	hybrid sensor histidine kinase/response regulator	NA	B5LWN8	Feldmannia_species_virus	37.7	6.7e-05
WP_011517436.1|3135680_3137381_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	66.3	1.0e-220
WP_017511836.1|3137504_3138488_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_011517438.1|3138607_3141487_+|tRNA	isoleucine--tRNA ligase	tRNA	K7YVP8	Megavirus	26.5	6.6e-79
WP_011517439.1|3141486_3142023_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_011517440.1|3142144_3143344_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.9	5.2e-38
WP_011517441.1|3143362_3144382_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011517442.1|3144486_3144981_+	dUTP diphosphatase	NA	A0A289ZTC1	Serratia_phage	53.2	6.7e-40
WP_011517443.1|3145032_3145878_-	VOC family protein	NA	NA	NA	NA	NA
WP_035821925.1|3145892_3146879_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_008644941.1|3147103_3149401_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.2	3.4e-171
>prophage 7
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	3168129	3178527	3928089		Roseobacter_phage(14.29%)	9	NA	NA
WP_011517460.1|3168129_3169719_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B0V011	Roseobacter_phage	31.2	4.5e-21
WP_011517461.1|3169720_3170242_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_011517462.1|3170265_3170907_+	deoxynucleoside kinase	NA	A0A1J0F9Q3	Only_Syngen_Nebraska_virus	27.0	6.3e-06
WP_011517463.1|3171043_3171865_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.5e-36
WP_011517464.1|3171872_3172571_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011517465.1|3172567_3173257_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.5	1.9e-16
WP_049799786.1|3173287_3175183_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	34.9	1.1e-50
WP_008641963.1|3175266_3176406_-	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	35.5	1.2e-23
WP_011517467.1|3176580_3178527_-	molecular chaperone DnaK	NA	A0A1V0SH73	Hokovirus	49.5	1.4e-144
>prophage 8
NC_007973	Cupriavidus metallidurans CH34, complete genome	3928089	3707689	3713754	3928089		uncultured_Caudovirales_phage(33.33%)	9	NA	NA
WP_008646124.1|3707689_3708277_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.0	2.0e-14
WP_011517863.1|3708307_3708712_-	YraN family protein	NA	NA	NA	NA	NA
WP_011517864.1|3708764_3709664_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	40.6	4.8e-36
WP_029306876.1|3709748_3710402_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	53.9	1.9e-18
WP_017510795.1|3710800_3711451_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011517867.1|3711454_3712102_+	exonuclease	NA	A0A2L0UZL4	Agrobacterium_phage	40.5	7.7e-36
WP_008646132.1|3712309_3712540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011517868.1|3712631_3712991_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	44.4	8.1e-19
WP_029306874.1|3713193_3713754_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	39.3	1.2e-21
>prophage 1
NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2580084	2156821	2224536	2580084	transposase,holin,integrase	Tetraselmis_virus(25.0%)	59	2183529:2183546	2222346:2222363
WP_011519821.1|2156821_2158426_+|holin	choline dehydrogenase	holin	A0A1V0S9J5	Catovirus	31.7	2.9e-52
WP_011519822.1|2158499_2160488_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	42.6	3.2e-149
WP_104669947.1|2160950_2162675_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	53.7	6.2e-149
WP_011519824.1|2162830_2163739_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011519825.1|2163892_2165197_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	41.4	1.6e-72
WP_011519826.1|2165249_2166431_+	amidohydrolase	NA	NA	NA	NA	NA
WP_085960506.1|2166420_2167296_-	zinc/iron-chelating domain-containing protein	NA	NA	NA	NA	NA
WP_011519828.1|2167289_2168105_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011519829.1|2168097_2169156_-	formylglycine-generating enzyme family protein	NA	NA	NA	NA	NA
WP_011519830.1|2169175_2171158_-	arylsulfatase	NA	NA	NA	NA	NA
WP_029306975.1|2171533_2172445_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011519833.1|2172793_2173948_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_062794226.1|2174440_2174707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008641308.1|2174810_2175065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011519835.1|2175134_2175509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011519836.1|2175610_2175898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035820417.1|2176222_2177122_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_029309719.1|2177191_2178007_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_011519839.1|2178172_2179351_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_008641302.1|2179427_2180210_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011519840.1|2180292_2181264_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_011519841.1|2181341_2182454_-	CoA transferase	NA	NA	NA	NA	NA
WP_152560162.1|2182600_2185216_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
2183529:2183546	attL	TGCGCGGCCTGGGCCAGA	NA	NA	NA	NA
WP_011519843.1|2185409_2186573_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011519844.1|2186770_2188318_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.3	9.2e-35
WP_011519845.1|2188366_2190004_-	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	26.3	2.0e-27
WP_011519846.1|2190174_2190690_-	thioesterase	NA	NA	NA	NA	NA
WP_029309720.1|2190942_2191251_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_011519848.1|2191255_2191846_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_011519849.1|2191849_2193403_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_011519850.1|2193399_2195079_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_011519851.1|2195101_2196622_-	glycerol kinase	NA	NA	NA	NA	NA
WP_011519852.1|2196626_2198081_-	MFS transporter	NA	NA	NA	NA	NA
WP_011519853.1|2198144_2198534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011519854.1|2198540_2198831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011519855.1|2199205_2199673_+	ester cyclase	NA	NA	NA	NA	NA
WP_049799811.1|2199958_2200213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011519857.1|2200209_2200857_+	prolyl 4-hydroxylase	NA	NA	NA	NA	NA
WP_085960481.1|2200894_2202081_-|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
WP_035823017.1|2202139_2202595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085960507.1|2202651_2203793_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	60.6	3.6e-89
WP_029309851.1|2203817_2204621_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_011519860.1|2204604_2206782_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_152560201.1|2206781_2207684_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049799813.1|2208083_2208641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152560200.1|2208866_2209337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152560199.1|2209572_2209920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011519869.1|2210919_2211411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152560198.1|2211550_2211859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152560197.1|2211961_2213053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157139117.1|2213661_2214321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011519875.1|2215440_2216169_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011519876.1|2216281_2216845_-	hydrolyase	NA	NA	NA	NA	NA
WP_011519877.1|2216858_2217701_-	fumarate hydratase	NA	NA	NA	NA	NA
WP_011519878.1|2217706_2218876_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_011519879.1|2218886_2219870_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_008651547.1|2221997_2222270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008651548.1|2222266_2223100_-	AAA family ATPase	NA	NA	NA	NA	NA
2222346:2222363	attR	TGCGCGGCCTGGGCCAGA	NA	NA	NA	NA
WP_008651549.1|2223096_2224536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NC_007972	Cupriavidus metallidurans CH34 plasmid pMOL28, complete sequence	171459	6170	64483	171459	transposase,integrase	Salmonella_phage(22.22%)	55	NA	NA
WP_008649488.1|6170_7367_-|integrase	site-specific integrase	integrase	A0A160DFH7	Gordonia_phage	27.2	1.0e-04
WP_011239987.1|7592_8423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029306646.1|8961_9165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029306645.1|9308_9872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029306644.1|9852_10077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011514918.1|10168_10978_+	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	33.5	1.5e-25
WP_011514919.1|11026_12466_+	DUF4263 domain-containing protein	NA	NA	NA	NA	NA
WP_152560224.1|12530_16325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514921.1|16530_17799_+	DUF5623 domain-containg protein	NA	NA	NA	NA	NA
WP_011514922.1|17873_18146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029306746.1|19278_19764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150982636.1|19885_20917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011514926.1|20974_21325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124682078.1|22385_22931_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_008651549.1|23042_24482_+|transposase	IS481 family transposase	transposase	O12274	Simian_T-lymphotropic_virus	37.8	4.1e-05
WP_008651548.1|24478_25312_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651547.1|25308_25581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012435589.1|28608_28965_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011514928.1|29098_29659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011342942.1|30065_30350_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA	NA
WP_011342941.1|30346_30625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003131969.1|31225_31660_-	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_006224622.1|31731_32082_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_003131987.1|32094_32370_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_003158917.1|32441_34127_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.3	2.1e-40
WP_000995360.1|34144_34510_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_003132004.1|34506_34743_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_003132006.1|34739_35729_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_011239984.1|35858_36419_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	89.4	1.5e-51
WP_011239983.1|36421_39391_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
WP_011514870.1|39447_39882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150982641.1|40164_40980_+	hypothetical protein	NA	A0A1V0SKX7	Klosneuvirus	31.4	2.6e-20
WP_011239982.1|41063_41486_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_011514872.1|41850_42804_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_011239980.1|42800_44288_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011514873.1|44475_45522_-	YncE family protein	NA	NA	NA	NA	NA
WP_011514874.1|45538_46465_-	DUF1259 domain-containing protein	NA	NA	NA	NA	NA
WP_011239977.1|46522_47764_-	MFS transporter	NA	NA	NA	NA	NA
WP_011514875.1|47786_48095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128646515.1|48114_48435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011239976.1|48532_48955_-	chromate resistance protein	NA	NA	NA	NA	NA
WP_011239975.1|48951_49293_-	rhodanese family chromate resistance protein ChrE	NA	NA	NA	NA	NA
WP_011239974.1|49310_49904_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_011514877.1|49923_51129_-	chromate transporter	NA	NA	NA	NA	NA
WP_011514878.1|51171_52146_-	chromate resistance protein	NA	NA	NA	NA	NA
WP_029310258.1|52426_52795_+	regulatory protein ChrI	NA	NA	NA	NA	NA
WP_128646513.1|52903_53035_-	YHYH domain-containing protein	NA	NA	NA	NA	NA
WP_011239971.1|53309_53597_+	cobalt/nickel resistance anti-sigma factor CnrY	NA	NA	NA	NA	NA
WP_011239970.1|53593_54040_+	periplasmic nickel sensor CnrX	NA	NA	NA	NA	NA
WP_011239969.1|54036_54612_+	nickel resistance ECF sigma factor CnrH	NA	NA	NA	NA	NA
WP_011239968.1|54684_55941_+	nickel efflux RND transporter outer membrane subunit CnrC	NA	NA	NA	NA	NA
WP_011239967.1|55937_57125_+	nickel efflux RND transporter periplasmic adaptor subunit CnrB	NA	NA	NA	NA	NA
WP_011239966.1|57121_60352_+	nickel efflux RND transporter permease subunit CnrA	NA	S5VTK5	Leptospira_phage	21.6	8.3e-54
WP_011239965.1|60397_61453_+	nickel diffusion facilitator CnrT	NA	NA	NA	NA	NA
WP_011239964.1|61543_64483_-|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	20.7	1.1e-33
>prophage 2
NC_007972	Cupriavidus metallidurans CH34 plasmid pMOL28, complete sequence	171459	98747	138475	171459	transposase,integrase	Acidithiobacillus_phage(25.0%)	31	124238:124259	137101:137122
WP_011239934.1|98747_99893_+|integrase	tyrosine-type recombinase/integrase	integrase	A8ATJ6	Listeria_phage	27.1	9.5e-05
WP_011514892.1|99867_101526_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_029309944.1|101522_103436_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011514894.1|103432_103933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029309942.1|104234_105677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514896.1|105676_110101_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_011514897.1|110769_112299_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_011239931.1|112303_113059_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	62.7	4.0e-84
WP_011239930.1|113066_114620_-|transposase	IS21-like element ISRme9 family transposase	transposase	K4I413	Acidithiobacillus_phage	54.6	8.3e-161
WP_124682111.1|114632_114854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080709891.1|114869_116249_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_011514931.1|116258_116474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029309940.1|116587_117253_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011514900.1|117593_120413_+	RHS repeat protein	NA	NA	NA	NA	NA
WP_011514935.1|120425_120641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029309938.1|121116_122067_+	phage Gp37/Gp68 family protein	NA	Q8W6R4	Burkholderia_virus	54.9	2.0e-88
WP_011514902.1|122351_122597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008648655.1|122691_123282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011239925.1|123335_124226_+	DNA/RNA non-specific endonuclease	NA	H6X497	Enterobacteria_phage	35.6	6.9e-19
124238:124259	attL	AAGGAACATGTTCCTTTCAAAA	NA	NA	NA	NA
WP_029306690.1|124316_125234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514905.1|126003_126750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011239922.1|127142_128279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011239921.1|128892_130047_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011239920.1|131175_132201_+	PRTRC system protein D	NA	NA	NA	NA	NA
WP_008649401.1|132899_133112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514906.1|133208_134276_-	zinc-binding protein	NA	A0A0H5AWB1	Pseudomonas_phage	28.9	2.8e-19
WP_011239918.1|134541_135114_-	single-stranded DNA-binding protein	NA	C5IHK5	Burkholderia_virus	70.6	2.4e-49
WP_035821539.1|135125_135824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008649407.1|135915_136347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514908.1|136445_136754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011239917.1|137455_138475_-|transposase	IS30-like element IS1086 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.4	4.9e-45
137101:137122	attR	TTTTGAAAGGAACATGTTCCTT	NA	NA	NA	NA
>prophage 1
NC_007971	Cupriavidus metallidurans CH34 plasmid pMOL30, complete sequence	233720	50916	121533	233720	integrase,transposase	Bacillus_phage(15.38%)	55	56002:56061	123097:123805
WP_011229325.1|50916_52092_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011514811.1|52229_54167_-	J domain-containing protein	NA	E3T4P7	Cafeteria_roenbergensis_virus	27.0	6.1e-12
WP_035884213.1|54328_54541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011229327.1|54663_55194_+	hypothetical protein	NA	NA	NA	NA	NA
56002:56061	attL	GATGCACCTCCTGGGCTTCCGCTTCGCGCCGCGCATCCGCGACCTGGGCGACACCAAGCT	NA	NA	NA	NA
WP_011229329.1|56710_57547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041240742.1|57534_57810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011514812.1|57921_58980_-	porin	NA	NA	NA	NA	NA
WP_011514813.1|59114_60359_-	MBL fold metallo-hydrolase	NA	S4VRL9	Pandoravirus	28.9	1.3e-15
WP_011229331.1|60630_61962_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_011514814.1|61983_62766_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_011514815.1|62765_63644_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_011229334.1|63810_64506_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011229335.1|64954_65329_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_011229337.1|65625_65973_-	mercury transporter MerT	NA	NA	NA	NA	NA
WP_011229338.1|66050_66449_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_155877860.1|66877_69130_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_011229340.1|69698_71186_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011514817.1|71182_72121_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_011229342.1|72985_73393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011229343.1|73501_73960_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	36.2	3.2e-12
WP_011229344.1|74210_74861_+	heavy metal efflux RND transporter CzcN	NA	NA	NA	NA	NA
WP_004635335.1|74890_75070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011229345.1|75175_75523_+	CDF family cobalt-zinc-cadmium transporter CzcI	NA	NA	NA	NA	NA
WP_011514819.1|75598_76855_+	heavy metal efflux RND transporter CzcC	NA	NA	NA	NA	NA
WP_004635340.1|76872_78435_+	heavy metal efflux RND transporter CzcB	NA	NA	NA	NA	NA
WP_011229347.1|78451_81643_+	heavy metal efflux RND transporter CzcA	NA	S5VTK5	Leptospira_phage	24.4	4.0e-77
WP_004635344.1|81693_82644_+	cation transporter	NA	A0A1V0SED0	Indivirus	28.3	6.3e-10
WP_011229348.1|82645_83323_+	heavy metal homeostasis two-component system response regulator CzcR	NA	W8CYM9	Bacillus_phage	34.2	5.8e-34
WP_011229349.1|83327_84758_+	sensor histidine kinase CzcS	NA	W8CYF6	Bacillus_phage	21.9	1.8e-13
WP_011514820.1|84866_85268_+	copper-binding periplasmic protein CzcE	NA	NA	NA	NA	NA
WP_008646716.1|85566_85845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011229350.1|86027_87095_-	porin	NA	NA	NA	NA	NA
WP_085960481.1|87211_88398_-|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
WP_008650726.1|88682_89105_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_011514822.1|89604_92094_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	39.0	3.9e-112
WP_008650724.1|92151_92454_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_008650723.1|92686_93808_-	glycosyltransferase family 2 protein	NA	U5P087	Shigella_phage	48.3	3.3e-74
WP_008650722.1|93804_94188_-	GtrA family protein	NA	NA	NA	NA	NA
WP_008650720.1|94184_95792_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_008650714.1|97226_97472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080709916.1|99634_100159_-	cytochrome c	NA	NA	NA	NA	NA
WP_080672773.1|102454_102823_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_080672772.1|102798_103014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011229360.1|104784_105795_-|transposase	IS30-like element ISRme10 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.3	1.2e-40
WP_011229361.1|105879_106143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104670213.1|109990_110296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017514740.1|110748_110949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011229366.1|111023_112100_-	signal peptidase II	NA	NA	NA	NA	NA
WP_011229367.1|112096_114496_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	48.1	6.2e-147
WP_008645748.1|114582_115020_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_008645747.1|115141_117070_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_008651547.1|118337_118610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008651548.1|118606_119440_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_008651549.1|119436_120876_-|transposase	IS481 family transposase	transposase	O12274	Simian_T-lymphotropic_virus	37.8	4.1e-05
WP_124682078.1|120987_121533_-|transposase	transposase	transposase	NA	NA	NA	NA
123097:123805	attR	AGCTTGGTGTCGCCCAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCCAGGAGGTGCATCAGGGCGAAGACGTGATCGGTGAAGCCCGCCGTGTCGGTGTAATGCTCCTCGATCCGCAAGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACGTAGGTCGAATCGCGCACGCCGACGTTCACGACCTTGGTGTGAAATGGCGCGTACTGGTCAGAAATGTGGGTGTAGAACGTCCGCCCTGGGCTGCTCCCGTATTTCGGGTTGATGTGGCCGGTGCTCTCGGCCTTGCTGCCGGTGCGGAAGTTCTGGCCGTCCGACGATGAGGTGGTGCCGTCGCCCCAGTGCTCGGCGAAGGGATGGCGGAACTGTGCGTTGACCAGATCGGCCAGCGCCGCCCCGTAGGTTTCGTCGCGGATGTGCCAGGCTTGCAGCCAAGCCAGCTTGGCGTAGGTCGTGCCGGGGCAAGACTCCGCCATCTTGGTCAGGCCCAGGTTGATCGCGTCGGCGAGGATCGTGGTCAGCAACAGGTTCTTGTCTTTGGCCGGGTCGCCCGATTTCAGATGCGCGAAATGCCGAGTGAAGCCCGTCCATTCGTCCACCTCCAGCAGCAGTTCGGTGATCTTGACGTGCGGCAGGATCATTGCCGTCTGGTCGATCAGCGCTTGGGCGGTGTCGGGTACCGCCGCGTCGAGCGGCGTGATCTTCAAGC	NA	NA	NA	NA
