assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	1	334500-334687	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGTTGCCGAACAACCACCCGCCGGCCCCGCCGGCAGCCCCGGT	44	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|170aa|up_9|NC_000962.3_322763_323273_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|398aa|up_8|NC_000962.3_323337_324531_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_7|NC_000962.3_324566_326249_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_6|NC_000962.3_326265_328461_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_5|NC_000962.3_328574_329708_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_4|NC_000962.3_329704_330325_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_3|NC_000962.3_330421_331003_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_2|NC_000962.3_330932_331658_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_1|NC_000962.3_331747_332668_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_0|NC_000962.3_332707_333136_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|838aa|down_0|NC_000962.3_336559_339073_-	pfam00934, PE, PE family	NA|537aa|down_1|NC_000962.3_339363_340974_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NC_000962.3_340997_341906_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NC_000962.3_342129_344025_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NC_000962.3_344021_345638_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NC_000962.3_345634_349627_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NC_000962.3_349623_349932_+	pfam00934, PE, PE family	NA|514aa|down_7|NC_000962.3_349934_351476_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NC_000962.3_351524_351818_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NC_000962.3_351847_352138_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	2	335385-335957	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	3	3	335805-335828|335850-335882|335904-335936	NC_000962.3_338586-338609|NC_000962.3_338613-338645|NC_000962.3_338667-338699	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|170aa|up_9|NC_000962.3_322763_323273_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|398aa|up_8|NC_000962.3_323337_324531_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_7|NC_000962.3_324566_326249_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_6|NC_000962.3_326265_328461_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_5|NC_000962.3_328574_329708_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_4|NC_000962.3_329704_330325_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_3|NC_000962.3_330421_331003_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_2|NC_000962.3_330932_331658_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_1|NC_000962.3_331747_332668_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_0|NC_000962.3_332707_333136_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|838aa|down_0|NC_000962.3_336559_339073_-	pfam00934, PE, PE family	NA|537aa|down_1|NC_000962.3_339363_340974_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NC_000962.3_340997_341906_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NC_000962.3_342129_344025_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NC_000962.3_344021_345638_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NC_000962.3_345634_349627_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NC_000962.3_349623_349932_+	pfam00934, PE, PE family	NA|514aa|down_7|NC_000962.3_349934_351476_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NC_000962.3_351524_351818_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NC_000962.3_351847_352138_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	3	366463-367161	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366751-366792|366826-366858	NC_000962.3_374783-374824|NC_000962.3_373598-373630	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NC_000962.3_363475_363778_+,NA|161aa|down_2|NC_000962.3_376572_377055_-,NA|410aa|down_6|NC_000962.3_379171_380401_+	NA|262aa|up_9|NC_000962.3_358170_358956_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NC_000962.3_358944_359748_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NC_000962.3_359757_361155_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NC_000962.3_361333_363109_+	pfam00934, PE, PE family	NA|76aa|up_5|NC_000962.3_363251_363479_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_000962.3_363475_363778_+	NA	NA|74aa|up_3|NC_000962.3_363825_364047_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_000962.3_364043_364469_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_000962.3_364604_365237_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_000962.3_365233_366142_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|964aa|down_0|NC_000962.3_372819_375711_-	pfam00823, PPE, PPE family	NA|224aa|down_1|NC_000962.3_375913_376585_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_2|NC_000962.3_376572_377055_-	NA	NA|239aa|down_3|NC_000962.3_377112_377829_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_4|NC_000962.3_377930_378587_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_5|NC_000962.3_378656_379148_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_6|NC_000962.3_379171_380401_+	NA	NA|621aa|down_7|NC_000962.3_380555_382418_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_8|NC_000962.3_382489_382876_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_9|NC_000962.3_382878_383541_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	4	692025-692101	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NC_000962.3_677709_677925_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NC_000962.3_677921_678329_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NC_000962.3_678388_679075_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NC_000962.3_679228_681862_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NC_000962.3_681884_684272_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NC_000962.3_684409_685132_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NC_000962.3_685128_685926_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NC_000962.3_685927_686815_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NC_000962.3_686820_688035_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NC_000962.3_689058_690504_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_000962.3_693236_694787_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_000962.3_694838_695231_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_000962.3_695227_695485_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_000962.3_695667_696903_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_000962.3_697153_697567_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_000962.3_697563_697800_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_000962.3_697903_698410_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_000962.3_698523_698994_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_000962.3_699037_699799_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_000962.3_699855_700167_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	5	926620-927567	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927403-927438|927403-927438|927403-927438	NC_000962.3_675128-675093|NC_000962.3_1213749-1213784|NC_000962.3_2423792-2423757	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|81aa|down_7|NC_000962.3_937592_937835_+	NA|685aa|up_9|NC_000962.3_914256_916311_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_000962.3_916476_917646_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_000962.3_917733_918750_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_000962.3_918911_919553_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_000962.3_919633_920689_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_000962.3_920740_921133_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_000962.3_921190_921613_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_2|NC_000962.3_921969_922875_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NC_000962.3_922893_923709_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NC_000962.3_924950_925364_+	pfam00934, PE, PE family	NA|883aa|down_0|NC_000962.3_927836_930485_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_000962.3_930952_931597_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|218aa|down_2|NC_000962.3_932278_932932_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NC_000962.3_933002_934031_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_4|NC_000962.3_934719_935490_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NC_000962.3_935576_936389_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NC_000962.3_936456_937317_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NC_000962.3_937592_937835_+	NA	NA|431aa|down_8|NC_000962.3_938111_939404_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NC_000962.3_939387_940392_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	6	1191316-1191424	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NC_000962.3_1180683_1182315_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NC_000962.3_1182390_1183455_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NC_000962.3_1183507_1183981_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NC_000962.3_1184014_1184878_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NC_000962.3_1184882_1185740_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NC_000962.3_1185740_1186823_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NC_000962.3_1186903_1187323_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NC_000962.3_1187434_1188001_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NC_000962.3_1187997_1188393_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NC_000962.3_1188420_1190424_-	pfam00934, PE, PE family	NA|588aa|down_0|NC_000962.3_1192509_1194273_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NC_000962.3_1194269_1195043_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NC_000962.3_1195054_1196092_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NC_000962.3_1196278_1197115_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NC_000962.3_1197230_1198082_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NC_000962.3_1198155_1199373_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NC_000962.3_1199425_1200370_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NC_000962.3_1200766_1201660_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NC_000962.3_1201716_1203111_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NC_000962.3_1203312_1204035_+	pfam06271, RDD, RDD family
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	7	1211950-1212806	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	73	1212333-1212354|1212378-1212393|1212516-1212537|1212516-1212537|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651|1212633-1212651	NC_000962.3_2960558-2960537|NC_000962.3_2088619-2088604|NC_000962.3_837434-837455|NC_000962.3_1217644-1217665|NC_000962.3_674792-674774|NC_000962.3_840496-840514|NC_000962.3_1213476-1213494|NC_000962.3_1217617-1217635|NC_000962.3_1217689-1217707|NC_000962.3_1630698-1630680|NC_000962.3_1633524-1633506|NC_000962.3_1636919-1636901|NC_000962.3_1990823-1990805|NC_000962.3_2061547-2061529|NC_000962.3_2061994-2061976|NC_000962.3_2062093-2062075|NC_000962.3_2802106-2802088|NC_000962.3_2805634-2805616|NC_000962.3_150183-150201|NC_000962.3_333782-333764|NC_000962.3_335201-335183|NC_000962.3_338003-337985|NC_000962.3_338132-338114|NC_000962.3_338399-338381|NC_000962.3_338428-338446|NC_000962.3_338522-338504|NC_000962.3_363053-363035|NC_000962.3_443427-443409|NC_000962.3_546769-546751|NC_000962.3_623983-624001|NC_000962.3_624205-624223|NC_000962.3_673958-673940|NC_000962.3_840217-840235|NC_000962.3_1090981-1090999|NC_000962.3_1091629-1091647|NC_000962.3_1095687-1095669|NC_000962.3_1213005-1213023|NC_000962.3_1213395-1213413|NC_000962.3_1218037-1218055|NC_000962.3_1489210-1489192|NC_000962.3_1618662-1618644|NC_000962.3_1619115-1619097|NC_000962.3_1636037-1636019|NC_000962.3_1636046-1636028|NC_000962.3_1864324-1864306|NC_000962.3_1864852-1864834|NC_000962.3_1990097-1990079|NC_000962.3_2001459-2001477|NC_000962.3_2088817-2088799|NC_000962.3_2303511-2303493|NC_000962.3_2356963-2356945|NC_000962.3_2419618-2419636|NC_000962.3_2423705-2423687|NC_000962.3_2569199-2569181|NC_000962.3_2693497-2693515|NC_000962.3_2795421-2795403|NC_000962.3_2796003-2795985|NC_000962.3_3054594-3054612|NC_000962.3_3054693-3054711|NC_000962.3_3705514-3705532|NC_000962.3_3737491-3737473|NC_000962.3_3738115-3738097|NC_000962.3_3738358-3738340|NC_000962.3_3738491-3738473|NC_000962.3_3802354-3802372|NC_000962.3_3802537-3802555|NC_000962.3_3802705-3802723|NC_000962.3_3930519-3930537|NC_000962.3_3932249-3932267|NC_000962.3_3940756-3940774|NC_000962.3_3948751-3948769|NC_000962.3_4031734-4031716|NC_000962.3_4094260-4094278	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NC_000962.3_1207382_1207649_+,NA|61aa|down_1|NC_000962.3_1215224_1215407_+,NA|294aa|down_8|NC_000962.3_1225262_1226144_-	NA|465aa|up_9|NC_000962.3_1201716_1203111_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NC_000962.3_1203312_1204035_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NC_000962.3_1204066_1205233_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NC_000962.3_1205303_1205798_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NC_000962.3_1205983_1206418_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NC_000962.3_1206519_1207386_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NC_000962.3_1207382_1207649_+	NA	NA|674aa|up_2|NC_000962.3_1207635_1209657_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NC_000962.3_1209755_1210484_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NC_000962.3_1210594_1211383_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|145aa|down_0|NC_000962.3_1214512_1214947_+	pfam00934, PE, PE family	NA|61aa|down_1|NC_000962.3_1215224_1215407_+	NA	NA|854aa|down_2|NC_000962.3_1216468_1219030_+	pfam00934, PE, PE family	NA|313aa|down_3|NC_000962.3_1219247_1220186_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_4|NC_000962.3_1220573_1221854_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_5|NC_000962.3_1221958_1222786_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_6|NC_000962.3_1222996_1224298_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|292aa|down_7|NC_000962.3_1224384_1225260_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|294aa|down_8|NC_000962.3_1225262_1226144_-	NA	NA|475aa|down_9|NC_000962.3_1226140_1227565_-	PRK00485, fumC, fumarate hydratase; Reviewed
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	8	1572185-1573257	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|191aa|up_7|NC_000962.3_1563693_1564266_+,NA	NA|103aa|up_9|NC_000962.3_1561463_1561772_+	pfam00934, PE, PE family	NA|540aa|up_8|NC_000962.3_1561768_1563388_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NC_000962.3_1563693_1564266_+	NA	NA|209aa|up_6|NC_000962.3_1564400_1565027_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NC_000962.3_1565092_1565425_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NC_000962.3_1565440_1566697_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NC_000962.3_1566824_1568036_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NC_000962.3_1568108_1569587_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NC_000962.3_1569583_1570969_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NC_000962.3_1571046_1572081_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NC_000962.3_1574111_1574513_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NC_000962.3_1574509_1574767_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NC_000962.3_1574849_1575809_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NC_000962.3_1575833_1576796_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NC_000962.3_1576929_1577532_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NC_000962.3_1577612_1579580_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NC_000962.3_1579597_1580422_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NC_000962.3_1580590_1581073_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NC_000962.3_1581144_1581969_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NC_000962.3_1582165_1583104_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	9	2088289-2088543	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088370-2088387|2088370-2088387|2088460-2088477	NC_000962.3_401079-401062|NC_000962.3_607438-607421|NC_000962.3_3450215-3450198	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|86aa|up_8|NC_000962.3_2075570_2075828_+,NA|88aa|up_0|NC_000962.3_2087648_2087912_-,NA	NA|226aa|up_9|NC_000962.3_2074840_2075518_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|86aa|up_8|NC_000962.3_2075570_2075828_+	NA	NA|942aa|up_7|NC_000962.3_2075876_2078702_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_000962.3_2078928_2079789_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_000962.3_2079829_2080696_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_000962.3_2080700_2082587_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_000962.3_2082602_2084636_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_000962.3_2084755_2086981_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_000962.3_2087256_2087652_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_000962.3_2087648_2087912_-	NA	NA|346aa|down_0|NC_000962.3_2089680_2090718_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_000962.3_2090717_2092085_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NC_000962.3_2092258_2093698_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|486aa|down_3|NC_000962.3_2093730_2095188_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_000962.3_2095217_2096168_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_000962.3_2096182_2096599_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_000962.3_2096876_2097299_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NC_000962.3_2097347_2097650_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_000962.3_2097646_2097961_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_000962.3_2097960_2099694_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	10	2168814-2169033	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NC_000962.3_2159920_2160328_-,NA|127aa|down_5|NC_000962.3_2176549_2176930_-	NA|741aa|up_9|NC_000962.3_2153888_2156111_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NC_000962.3_2156148_2156592_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NC_000962.3_2156705_2157299_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NC_000962.3_2157381_2157987_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NC_000962.3_2158086_2159091_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NC_000962.3_2159190_2159943_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NC_000962.3_2159920_2160328_-	NA	NA|368aa|up_2|NC_000962.3_2160462_2161566_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NC_000962.3_2161565_2162762_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NC_000962.3_2162931_2167311_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_000962.3_2171060_2171525_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_000962.3_2171622_2172486_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_000962.3_2172523_2173795_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_000962.3_2174066_2175182_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_000962.3_2175172_2176513_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_000962.3_2176549_2176930_-	NA	NA|621aa|down_6|NC_000962.3_2177086_2178949_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_000962.3_2178956_2179436_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_000962.3_2179672_2180446_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_000962.3_2180449_2181217_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	11	3119185-3120539	2,7,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|210aa|up_8|NC_000962.3_3112464_3113094_-,NA|135aa|up_7|NC_000962.3_3112866_3113271_+,NA|64aa|up_6|NC_000962.3_3113267_3113459_+,NA|86aa|up_4|NC_000962.3_3115045_3115303_+,NA|104aa|up_3|NC_000962.3_3115407_3115719_+,NA|203aa|up_2|NC_000962.3_3116138_3116747_+,NA	NA|156aa|up_9|NC_000962.3_3111821_3112289_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_8|NC_000962.3_3112464_3113094_-	NA	NA|135aa|up_7|NC_000962.3_3112866_3113271_+	NA	NA|64aa|up_6|NC_000962.3_3113267_3113459_+	NA	NA|385aa|up_5|NC_000962.3_3113657_3114812_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_000962.3_3115045_3115303_+	NA	NA|104aa|up_3|NC_000962.3_3115407_3115719_+	NA	NA|203aa|up_2|NC_000962.3_3116138_3116747_+	NA	NA|470aa|up_1|NC_000962.3_3116817_3118227_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_000962.3_3118223_3119036_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NC_000962.3_3123624_3123966_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_000962.3_3123966_3124983_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NC_000962.3_3124995_3126144_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_000962.3_3126239_3127367_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_000962.3_3127363_3128272_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_000962.3_3128252_3128963_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_000962.3_3128972_3129347_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NC_000962.3_3129343_3131773_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NC_000962.3_3131769_3132714_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|216aa|down_9|NC_000962.3_3132891_3133539_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	12	3121862-3123576	8,5,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|210aa|up_8|NC_000962.3_3112464_3113094_-,NA|135aa|up_7|NC_000962.3_3112866_3113271_+,NA|64aa|up_6|NC_000962.3_3113267_3113459_+,NA|86aa|up_4|NC_000962.3_3115045_3115303_+,NA|104aa|up_3|NC_000962.3_3115407_3115719_+,NA|203aa|up_2|NC_000962.3_3116138_3116747_+,NA	NA|156aa|up_9|NC_000962.3_3111821_3112289_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_8|NC_000962.3_3112464_3113094_-	NA	NA|135aa|up_7|NC_000962.3_3112866_3113271_+	NA	NA|64aa|up_6|NC_000962.3_3113267_3113459_+	NA	NA|385aa|up_5|NC_000962.3_3113657_3114812_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_000962.3_3115045_3115303_+	NA	NA|104aa|up_3|NC_000962.3_3115407_3115719_+	NA	NA|203aa|up_2|NC_000962.3_3116138_3116747_+	NA	NA|470aa|up_1|NC_000962.3_3116817_3118227_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_000962.3_3118223_3119036_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NC_000962.3_3123624_3123966_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_000962.3_3123966_3124983_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NC_000962.3_3124995_3126144_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_000962.3_3126239_3127367_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_000962.3_3127363_3128272_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_000962.3_3128252_3128963_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_000962.3_3128972_3129347_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NC_000962.3_3129343_3131773_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NC_000962.3_3131769_3132714_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|216aa|down_9|NC_000962.3_3132891_3133539_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	13	3740685-3741226	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|87aa|down_7|NC_000962.3_3768735_3768996_-	NA|282aa|up_9|NC_000962.3_3719936_3720782_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NC_000962.3_3721256_3721697_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_000962.3_3721730_3722600_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_000962.3_3722620_3723631_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|410aa|up_5|NC_000962.3_3724614_3725844_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NC_000962.3_3726126_3727476_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NC_000962.3_3727487_3728627_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NC_000962.3_3728623_3729355_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_1|NC_000962.3_3729363_3736935_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NC_000962.3_3736983_3738000_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NC_000962.3_3743197_3743455_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NC_000962.3_3743710_3753184_-	pfam00823, PPE, PPE family	NA|164aa|down_2|NC_000962.3_3753764_3754256_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|315aa|down_3|NC_000962.3_3754292_3755237_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|3717aa|down_4|NC_000962.3_3755951_3767102_-	pfam00823, PPE, PPE family	NA|265aa|down_5|NC_000962.3_3767345_3768140_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NC_000962.3_3768221_3768593_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|87aa|down_7|NC_000962.3_3768735_3768996_-	NA	NA|130aa|down_8|NC_000962.3_3769110_3769500_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_9|NC_000962.3_3769513_3769807_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)
GCF_000195955.2_ASM19595v2	NC_000962	Mycobacterium tuberculosis H37Rv, complete genome	14	4110678-4110766	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_000962.3_4101264_4102035_-,NA|233aa|up_0|NC_000962.3_4109782_4110481_-,NA|126aa|down_6|NC_000962.3_4116001_4116379_+	NA|353aa|up_9|NC_000962.3_4096935_4097994_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_000962.3_4098095_4099148_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_000962.3_4099646_4100510_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_000962.3_4101264_4102035_-	NA	NA|549aa|up_5|NC_000962.3_4102031_4103678_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_4|NC_000962.3_4103674_4104475_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_000962.3_4104530_4105457_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_000962.3_4105458_4107084_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_000962.3_4107791_4109747_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_000962.3_4109782_4110481_-	NA	NA|173aa|down_0|NC_000962.3_4110826_4111345_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_000962.3_4111345_4112329_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_000962.3_4112321_4113515_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_000962.3_4113520_4114342_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_000962.3_4114473_4115157_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_000962.3_4115156_4115894_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_000962.3_4116001_4116379_+	NA	NA|225aa|down_7|NC_000962.3_4116477_4117152_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_000962.3_4117257_4118052_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_000962.3_4118058_4118514_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
