assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	1	331969-332766	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|170aa|up_9|NC_002945.4_321088_321598_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|398aa|up_8|NC_002945.4_321662_322856_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_7|NC_002945.4_322891_324574_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_6|NC_002945.4_324590_326786_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_5|NC_002945.4_326899_328033_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_4|NC_002945.4_328029_328650_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_3|NC_002945.4_328746_329328_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_2|NC_002945.4_329257_329983_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_1|NC_002945.4_330072_330993_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_0|NC_002945.4_331032_331461_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|878aa|down_0|NC_002945.4_334696_337330_-	pfam00934, PE, PE family	NA|832aa|down_1|NC_002945.4_337579_340075_-	pfam00934, PE, PE family	NA|537aa|down_2|NC_002945.4_340365_341976_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NC_002945.4_341999_342908_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NC_002945.4_343131_345027_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NC_002945.4_345023_346640_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NC_002945.4_346636_350629_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NC_002945.4_350625_350934_+	pfam00934, PE, PE family	NA|514aa|down_8|NC_002945.4_350936_352478_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NC_002945.4_352526_352820_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	2	339420-339644	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCCCCGCCGGCGCCGCCGGTCGCGCCG	42	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|561aa|up_9|NC_002945.4_322891_324574_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NC_002945.4_324590_326786_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NC_002945.4_326899_328033_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NC_002945.4_328029_328650_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NC_002945.4_328746_329328_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NC_002945.4_329257_329983_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NC_002945.4_330072_330993_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NC_002945.4_331032_331461_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|869aa|up_1|NC_002945.4_331826_334433_-	pfam00934, PE, PE family	NA|878aa|up_0|NC_002945.4_334696_337330_-	pfam00934, PE, PE family	NA|537aa|down_0|NC_002945.4_340365_341976_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NC_002945.4_341999_342908_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NC_002945.4_343131_345027_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NC_002945.4_345023_346640_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NC_002945.4_346636_350629_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NC_002945.4_350625_350934_+	pfam00934, PE, PE family	NA|514aa|down_6|NC_002945.4_350936_352478_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NC_002945.4_352526_352820_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NC_002945.4_352849_353140_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NC_002945.4_353150_354038_+	pfam14011, ESX-1_EspG, EspG family
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	3	693270-693346	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|229aa|up_9|NC_002945.4_679631_680318_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_8|NC_002945.4_680471_683105_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_7|NC_002945.4_683127_685515_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_6|NC_002945.4_685652_686375_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_5|NC_002945.4_686371_687169_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_4|NC_002945.4_687170_688058_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_3|NC_002945.4_688063_689278_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_2|NC_002945.4_689274_690306_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_1|NC_002945.4_690302_691748_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NC_002945.4_691744_693181_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_002945.4_694481_696032_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_002945.4_696083_696476_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_002945.4_696472_696730_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_002945.4_696912_698148_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_002945.4_698398_698812_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_002945.4_698808_699045_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_002945.4_699148_699655_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_002945.4_699768_700239_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_002945.4_700282_701044_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_002945.4_701100_701412_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	4	927450-928361	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	23	928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343|928317-928343	NC_002945.4_835328-835354|NC_002945.4_331941-331915|NC_002945.4_334811-334785|NC_002945.4_337691-337665|NC_002945.4_841579-841605|NC_002945.4_842905-842931|NC_002945.4_927183-927209|NC_002945.4_2408613-2408587|NC_002945.4_333177-333151|NC_002945.4_335762-335736|NC_002945.4_336101-336075|NC_002945.4_338801-338775|NC_002945.4_676371-676345|NC_002945.4_838700-838726|NC_002945.4_839798-839824|NC_002945.4_927084-927110|NC_002945.4_1215158-1215184|NC_002945.4_1656872-1656846|NC_002945.4_1854521-1854495|NC_002945.4_2056246-2056220|NC_002945.4_3760454-3760480|NC_002945.4_3889028-3889054|NC_002945.4_3889184-3889210	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|81aa|down_7|NC_002945.4_938347_938590_+	NA|390aa|up_9|NC_002945.4_917306_918476_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_8|NC_002945.4_918563_919580_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_7|NC_002945.4_919741_920383_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_6|NC_002945.4_920463_921519_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_5|NC_002945.4_921570_921963_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_4|NC_002945.4_922020_922443_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_3|NC_002945.4_922404_922695_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_2|NC_002945.4_922799_923705_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NC_002945.4_923723_924539_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NC_002945.4_925780_926194_+	pfam00934, PE, PE family	NA|832aa|down_0|NC_002945.4_928738_931234_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_002945.4_931701_932346_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|241aa|down_2|NC_002945.4_932958_933681_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NC_002945.4_933751_934780_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|259aa|down_4|NC_002945.4_935468_936245_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NC_002945.4_936331_937144_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NC_002945.4_937211_938072_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NC_002945.4_938347_938590_+	NA	NA|431aa|down_8|NC_002945.4_938866_940159_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NC_002945.4_940142_941147_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	5	929145-929274	2	PILER-CR	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CCGCCGGCTCCGCCGGTGGCGCCGC	25	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|81aa|down_6|NC_002945.4_938347_938590_+	NA|339aa|up_9|NC_002945.4_918563_919580_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_8|NC_002945.4_919741_920383_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_7|NC_002945.4_920463_921519_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_6|NC_002945.4_921570_921963_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_5|NC_002945.4_922020_922443_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_4|NC_002945.4_922404_922695_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_3|NC_002945.4_922799_923705_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_2|NC_002945.4_923723_924539_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_1|NC_002945.4_925780_926194_+	pfam00934, PE, PE family	NA|774aa|up_0|NC_002945.4_926190_928512_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|215aa|down_0|NC_002945.4_931701_932346_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|241aa|down_1|NC_002945.4_932958_933681_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_2|NC_002945.4_933751_934780_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|259aa|down_3|NC_002945.4_935468_936245_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_4|NC_002945.4_936331_937144_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_5|NC_002945.4_937211_938072_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_6|NC_002945.4_938347_938590_+	NA	NA|431aa|down_7|NC_002945.4_938866_940159_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_8|NC_002945.4_940142_941147_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	NA|217aa|down_9|NC_002945.4_941210_941861_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	6	1213338-1214194	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	79	1213721-1213742|1213766-1213781|1213904-1213925|1213904-1213925|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039|1214021-1214039	NC_002945.4_2932431-2932410|NC_002945.4_2083380-2083365|NC_002945.4_839162-839183|NC_002945.4_1219053-1219074|NC_002945.4_335198-335180|NC_002945.4_676035-676017|NC_002945.4_841411-841429|NC_002945.4_1214837-1214855|NC_002945.4_1219026-1219044|NC_002945.4_1219098-1219116|NC_002945.4_1631454-1631436|NC_002945.4_1634280-1634262|NC_002945.4_1637165-1637147|NC_002945.4_1637876-1637858|NC_002945.4_1638071-1638053|NC_002945.4_1986073-1986055|NC_002945.4_2056420-2056402|NC_002945.4_2056966-2056948|NC_002945.4_2773315-2773297|NC_002945.4_2776842-2776824|NC_002945.4_3884268-3884286|NC_002945.4_150194-150212|NC_002945.4_333333-333315|NC_002945.4_336305-336287|NC_002945.4_336743-336725|NC_002945.4_336752-336734|NC_002945.4_339014-338996|NC_002945.4_339143-339125|NC_002945.4_339410-339392|NC_002945.4_364100-364082|NC_002945.4_444444-444426|NC_002945.4_547788-547770|NC_002945.4_625226-625244|NC_002945.4_625448-625466|NC_002945.4_675201-675183|NC_002945.4_842407-842425|NC_002945.4_1091448-1091466|NC_002945.4_1092096-1092114|NC_002945.4_1096166-1096148|NC_002945.4_1214393-1214411|NC_002945.4_1214756-1214774|NC_002945.4_1215047-1215065|NC_002945.4_1215065-1215083|NC_002945.4_1219446-1219464|NC_002945.4_1491654-1491636|NC_002945.4_1619399-1619381|NC_002945.4_1619852-1619834|NC_002945.4_1637030-1637012|NC_002945.4_1637039-1637021|NC_002945.4_1637252-1637234|NC_002945.4_1854098-1854080|NC_002945.4_1854626-1854608|NC_002945.4_1985347-1985329|NC_002945.4_1996308-1996326|NC_002945.4_2083578-2083560|NC_002945.4_2291835-2291817|NC_002945.4_2343217-2343199|NC_002945.4_2404543-2404561|NC_002945.4_2408526-2408508|NC_002945.4_2551205-2551187|NC_002945.4_2665977-2665995|NC_002945.4_2766633-2766615|NC_002945.4_2767215-2767197|NC_002945.4_3015641-3015659|NC_002945.4_3015740-3015758|NC_002945.4_3664449-3664467|NC_002945.4_3695599-3695581|NC_002945.4_3696223-3696205|NC_002945.4_3696466-3696448|NC_002945.4_3696598-3696580|NC_002945.4_3698503-3698485|NC_002945.4_3759035-3759053|NC_002945.4_3759218-3759236|NC_002945.4_3880492-3880510|NC_002945.4_3889406-3889424|NC_002945.4_3979361-3979343|NC_002945.4_4035909-4035927|NC_002945.4_4035999-4036017|NC_002945.4_4036107-4036125	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NC_002945.4_1208770_1209037_+,NA|56aa|down_2|NC_002945.4_1216372_1216540_+,NA|35aa|down_3|NC_002945.4_1216925_1217030_+	NA|465aa|up_9|NC_002945.4_1203104_1204499_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NC_002945.4_1204700_1205423_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NC_002945.4_1205454_1206621_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NC_002945.4_1206691_1207186_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NC_002945.4_1207371_1207806_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NC_002945.4_1207907_1208774_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NC_002945.4_1208770_1209037_+	NA	NA|674aa|up_2|NC_002945.4_1209023_1211045_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NC_002945.4_1211143_1211872_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NC_002945.4_1211982_1212771_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NC_002945.4_1215448_1215769_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NC_002945.4_1215921_1216356_+	pfam00934, PE, PE family	NA|56aa|down_2|NC_002945.4_1216372_1216540_+	NA	NA|35aa|down_3|NC_002945.4_1216925_1217030_+	NA	NA|152aa|down_4|NC_002945.4_1217007_1217463_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|851aa|down_5|NC_002945.4_1217877_1220430_+	pfam00934, PE, PE family	NA|313aa|down_6|NC_002945.4_1220647_1221586_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NC_002945.4_1221973_1223254_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NC_002945.4_1223358_1224186_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NC_002945.4_1224396_1225698_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	7	2083050-2083304	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2083131-2083148|2083131-2083148|2083221-2083238	NC_002945.4_402109-402092|NC_002945.4_608589-608572|NC_002945.4_3411174-3411157	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|86aa|up_8|NC_002945.4_2070331_2070589_+,NA|88aa|up_0|NC_002945.4_2082409_2082673_-,NA	NA|226aa|up_9|NC_002945.4_2069601_2070279_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|86aa|up_8|NC_002945.4_2070331_2070589_+	NA	NA|942aa|up_7|NC_002945.4_2070637_2073463_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_002945.4_2073689_2074550_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_002945.4_2074590_2075457_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_002945.4_2075461_2077348_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_002945.4_2077363_2079397_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_002945.4_2079516_2081742_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_002945.4_2082017_2082413_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_002945.4_2082409_2082673_-	NA	NA|350aa|down_0|NC_002945.4_2084294_2085344_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_002945.4_2085343_2086711_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|265aa|down_2|NC_002945.4_2086884_2087679_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|686aa|down_3|NC_002945.4_2087689_2089747_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_002945.4_2089836_2090787_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_002945.4_2090801_2091218_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_002945.4_2091495_2091918_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NC_002945.4_2091966_2092269_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_002945.4_2092265_2092580_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_002945.4_2092579_2094313_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	8	2164860-2164985	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NC_002945.4_2154610_2155018_-,NA|335aa|up_0|NC_002945.4_2163692_2164697_-,NA|127aa|down_5|NC_002945.4_2172594_2172975_-	NA|741aa|up_9|NC_002945.4_2148578_2150801_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NC_002945.4_2150838_2151282_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NC_002945.4_2151395_2151989_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NC_002945.4_2152071_2152677_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NC_002945.4_2152776_2153781_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NC_002945.4_2153880_2154633_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NC_002945.4_2154610_2155018_-	NA	NA|767aa|up_2|NC_002945.4_2155152_2157453_+	PLN02892, PLN02892, isocitrate lyase	NA|1911aa|up_1|NC_002945.4_2157622_2163355_-	pfam00823, PPE, PPE family	NA|335aa|up_0|NC_002945.4_2163692_2164697_-	NA	NA|155aa|down_0|NC_002945.4_2167105_2167570_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_002945.4_2167667_2168531_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_002945.4_2168568_2169840_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_002945.4_2170111_2171227_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_002945.4_2171217_2172558_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_002945.4_2172594_2172975_-	NA	NA|621aa|down_6|NC_002945.4_2173131_2174994_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_002945.4_2175001_2175481_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_002945.4_2175717_2176491_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_002945.4_2176494_2177262_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	9	3080147-3081360	3,4,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	1	1	3080852-3080886	NC_002945.4_3081361-3081395	II-B,III-A:II-B,III-A:II-B,III-A	16,16,16	16	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_9|NC_002945.4_3073830_3074235_+,NA|64aa|up_8|NC_002945.4_3074231_3074423_+,NA|86aa|up_6|NC_002945.4_3076009_3076267_+,NA|104aa|up_5|NC_002945.4_3076371_3076683_+,NA|203aa|up_3|NC_002945.4_3077102_3077711_+,NA	NA|135aa|up_9|NC_002945.4_3073830_3074235_+	NA	NA|64aa|up_8|NC_002945.4_3074231_3074423_+	NA	NA|385aa|up_7|NC_002945.4_3074621_3075776_+	pfam00665, rve, Integrase core domain	NA|86aa|up_6|NC_002945.4_3076009_3076267_+	NA	NA|104aa|up_5|NC_002945.4_3076371_3076683_+	NA	NA|133aa|up_4|NC_002945.4_3076704_3077103_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|up_3|NC_002945.4_3077102_3077711_+	NA	NA|227aa|up_2|NC_002945.4_3077781_3078462_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|238aa|up_1|NC_002945.4_3078475_3079189_+	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|271aa|up_0|NC_002945.4_3079185_3079998_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|279aa|down_0|NC_002945.4_3081457_3082294_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|down_1|NC_002945.4_3082392_3082719_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|114aa|down_2|NC_002945.4_3084598_3084940_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_3|NC_002945.4_3084940_3085957_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|304aa|down_4|NC_002945.4_3086206_3087118_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|376aa|down_5|NC_002945.4_3087213_3088341_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_6|NC_002945.4_3088337_3089246_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_7|NC_002945.4_3089226_3089937_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_8|NC_002945.4_3089946_3090321_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_9|NC_002945.4_3090317_3092756_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	10	3082754-3084550	5,5,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	24,24,23	24	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|86aa|up_8|NC_002945.4_3076009_3076267_+,NA|104aa|up_7|NC_002945.4_3076371_3076683_+,NA|203aa|up_5|NC_002945.4_3077102_3077711_+,NA	NA|385aa|up_9|NC_002945.4_3074621_3075776_+	pfam00665, rve, Integrase core domain	NA|86aa|up_8|NC_002945.4_3076009_3076267_+	NA	NA|104aa|up_7|NC_002945.4_3076371_3076683_+	NA	NA|133aa|up_6|NC_002945.4_3076704_3077103_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|up_5|NC_002945.4_3077102_3077711_+	NA	NA|227aa|up_4|NC_002945.4_3077781_3078462_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|238aa|up_3|NC_002945.4_3078475_3079189_+	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|271aa|up_2|NC_002945.4_3079185_3079998_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|279aa|up_1|NC_002945.4_3081457_3082294_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|up_0|NC_002945.4_3082392_3082719_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|114aa|down_0|NC_002945.4_3084598_3084940_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_002945.4_3084940_3085957_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|304aa|down_2|NC_002945.4_3086206_3087118_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|376aa|down_3|NC_002945.4_3087213_3088341_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_002945.4_3088337_3089246_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_002945.4_3089226_3089937_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_002945.4_3089946_3090321_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_002945.4_3090317_3092756_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NC_002945.4_3092752_3093697_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|216aa|down_9|NC_002945.4_3093874_3094522_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000195835.2_ASM19583v2	NC_002945	Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	11	4052437-4052525	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_002945.4_4043023_4043794_-,NA|233aa|up_0|NC_002945.4_4051541_4052240_-,NA|126aa|down_6|NC_002945.4_4057760_4058138_+	NA|353aa|up_9|NC_002945.4_4038693_4039752_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_002945.4_4039853_4040906_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_002945.4_4041405_4042269_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_002945.4_4043023_4043794_-	NA	NA|549aa|up_5|NC_002945.4_4043790_4045437_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_4|NC_002945.4_4045433_4046234_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_002945.4_4046289_4047216_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_002945.4_4047217_4048843_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_002945.4_4049550_4051506_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_002945.4_4051541_4052240_-	NA	NA|173aa|down_0|NC_002945.4_4052585_4053104_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_002945.4_4053104_4054088_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_002945.4_4054080_4055274_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_002945.4_4055279_4056101_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_002945.4_4056232_4056916_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_002945.4_4056915_4057653_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_002945.4_4057760_4058138_+	NA	NA|225aa|down_7|NC_002945.4_4058236_4058911_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_002945.4_4059016_4059811_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_002945.4_4059817_4060273_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
