The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_003212	Listeria innocua Clip11262, complete genome	3011208	74987	163605	3011208	integrase,tail,plate,portal,terminase,holin,capsid	Listeria_phage(87.32%)	106	69938:69954	153845:153861
69938:69954	attL	GCAAAACATGGATAATT	NA	NA	NA	NA
WP_010990187.1|74987_75944_+	2-hydroxyacid dehydrogenase family protein	NA	M1H502	Paramecium_bursaria_Chlorella_virus	28.1	3.8e-31
WP_010990188.1|76208_77411_-|integrase	site-specific integrase	integrase	A0A059T666	Listeria_phage	99.2	1.9e-221
WP_010990189.1|77475_78126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041918345.1|78180_78348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010990190.1|78504_78981_-	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	59.2	2.7e-38
WP_026747215.1|79153_79357_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010990191.1|79377_79644_+	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	98.9	1.2e-40
WP_003727745.1|79868_80063_+	hypothetical protein	NA	A0A059T6E5	Listeria_phage	96.9	6.3e-26
WP_003733634.1|80074_80311_+	hypothetical protein	NA	A0A059T5E9	Listeria_phage	100.0	3.3e-37
WP_010990192.1|80307_80589_+	hypothetical protein	NA	A0A0B5CTX3	Listeria_phage	96.8	3.2e-39
WP_003727748.1|80620_80782_+	hypothetical protein	NA	A0A059T7X7	Listeria_phage	98.1	1.2e-19
WP_010990193.1|80774_81017_-	hypothetical protein	NA	A0A059T7Q3	Listeria_phage	98.8	6.8e-38
WP_003747301.1|81080_81854_+	phage repressor protein/antirepressor Ant	NA	A8ATY0	Listeria_phage	99.6	2.4e-140
WP_010990194.1|81972_82497_+	hypothetical protein	NA	A8ATY1	Listeria_phage	97.7	3.5e-87
WP_003731816.1|82503_82689_+	helix-turn-helix domain-containing protein	NA	A0A059T674	Listeria_phage	100.0	1.1e-27
WP_003734954.1|82704_82893_+	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	100.0	4.5e-29
WP_010990195.1|83125_84085_+	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	98.1	8.1e-175
WP_010990196.1|84084_84900_+	recombinase RecT	NA	A0A0B5CTU3	Listeria_phage	98.5	1.7e-149
WP_010990197.1|84920_85832_+	DnaD domain-containing protein	NA	A0A0B5D175	Listeria_phage	87.2	7.3e-133
WP_010990198.1|85828_85996_+	hypothetical protein	NA	A8ASN5	Listeria_phage	92.6	5.8e-20
WP_041918346.1|86011_86293_+	hypothetical protein	NA	A0A0B5CU46	Listeria_phage	96.6	1.4e-42
WP_003734949.1|86289_87102_+	DNA adenine methylase	NA	Q8W5X3	Listeria_phage	96.3	1.6e-152
WP_010990199.1|87098_87728_+	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	53.6	1.8e-50
WP_010990200.1|87724_88246_+	hypothetical protein	NA	A0A059T7V5	Listeria_phage	46.7	7.8e-31
WP_010990201.1|88372_88765_+	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	49.0	7.2e-29
WP_003727764.1|88761_88947_+	hypothetical protein	NA	A0A059T5G1	Listeria_phage	100.0	4.1e-27
WP_010990202.1|88943_89234_+	hypothetical protein	NA	Q8W5X0	Listeria_phage	90.6	7.6e-44
WP_010990203.1|89230_89437_+	hypothetical protein	NA	A8ATE0	Listeria_phage	93.8	4.2e-28
WP_010990204.1|89437_89839_+	hypothetical protein	NA	A8ATZ6	Listeria_phage	69.5	3.6e-44
WP_010990205.1|89835_90336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990206.1|90332_90812_+	single-stranded DNA-binding protein	NA	A8ASP5	Listeria_phage	91.2	2.1e-75
WP_010990207.1|90830_91013_+	hypothetical protein	NA	A8ASP6	Listeria_phage	81.0	2.9e-17
WP_010990208.1|90957_91362_+	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	89.6	7.4e-61
WP_010990209.1|91365_91749_+	DUF2481 family protein	NA	A0A0B5CYS3	Listeria_phage	92.1	1.4e-61
WP_010990210.1|91889_92324_+	hypothetical protein	NA	A8AU03	Listeria_phage	94.4	2.6e-72
WP_010990211.1|92533_92710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990212.1|92768_93032_+	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	78.2	1.7e-34
WP_010990213.1|93089_93632_+|terminase	terminase small subunit	terminase	A8ASJ1	Listeria_phage	98.9	5.4e-91
WP_010990214.1|93600_94932_+|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	98.6	1.1e-259
WP_010990215.1|94944_96714_+|portal	phage portal protein	portal	A8ASJ3	Listeria_phage	92.2	2.0e-267
WP_010990216.1|96714_97854_+|capsid	phage minor capsid protein	capsid	A0A0B5D147	Listeria_phage	97.4	1.7e-203
WP_010990217.1|97932_98502_+	phage scaffolding protein	NA	Q9T1B8	Listeria_phage	97.4	7.4e-91
WP_010990218.1|98525_99425_+|capsid	phage major capsid protein	capsid	A0A0B5CU19	Listeria_phage	99.0	1.0e-166
WP_003731734.1|99424_99583_+	hypothetical protein	NA	Q9T1B6	Listeria_phage	94.2	6.7e-18
WP_010990219.1|99584_99980_+	hypothetical protein	NA	A0A059T5E3	Listeria_phage	99.2	6.7e-67
WP_010990220.1|99979_100342_+	hypothetical protein	NA	A8ASJ9	Listeria_phage	99.2	2.9e-64
WP_010990221.1|100341_100680_+|capsid	minor capsid protein	capsid	A8ASK0	Listeria_phage	100.0	4.9e-58
WP_010990222.1|100679_101087_+	hypothetical protein	NA	A8ASK1	Listeria_phage	100.0	9.0e-67
WP_010990223.1|101089_101527_+	hypothetical protein	NA	A8ASK2	Listeria_phage	99.3	2.5e-78
WP_041918347.1|101549_101789_+	Ig-like domain-containing protein	NA	A0A059T5E4	Listeria_phage	96.2	6.1e-31
WP_003743404.1|101841_102264_+|tail	phage tail assembly chaperone	tail	A8ASK4	Listeria_phage	100.0	3.1e-70
WP_010990224.1|102269_102872_+	bacteriophage Gp15 family protein	NA	A8ASK5	Listeria_phage	100.0	3.7e-109
WP_010990225.1|102882_108249_+	tape measure protein	NA	A8ASK6	Listeria_phage	88.7	0.0e+00
WP_003743410.1|108245_109073_+|tail	phage tail family protein	tail	A8ASK7	Listeria_phage	100.0	2.4e-159
WP_003743412.1|109072_110110_+|tail	phage tail protein	tail	A8ASK8	Listeria_phage	100.0	2.0e-195
WP_010990226.1|110110_111136_+	hypothetical protein	NA	A8ASK9	Listeria_phage	100.0	2.3e-175
WP_010990227.1|111132_112200_+|plate	BppU family phage baseplate upper protein	plate	A8ASL0	Listeria_phage	100.0	8.8e-162
WP_003725055.1|112196_112538_+	hypothetical protein	NA	A8ASL1	Listeria_phage	100.0	4.2e-57
WP_003725054.1|112538_112685_+	XkdX family protein	NA	A8ASL2	Listeria_phage	100.0	1.1e-19
WP_003725053.1|112721_113087_+	hypothetical protein	NA	A8ASL3	Listeria_phage	100.0	1.3e-11
WP_003725052.1|113099_113381_+|holin	holin	holin	A8ASL4	Listeria_phage	100.0	8.2e-43
WP_010990228.1|113380_114250_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	A8ASL5	Listeria_phage	97.2	2.5e-167
WP_010990229.1|114274_114691_+	hypothetical protein	NA	A0A0B5CTT3	Listeria_phage	46.4	1.4e-27
WP_041918348.1|114964_115198_+	hypothetical protein	NA	A0A059T6E1	Listeria_phage	97.4	5.6e-37
WP_041918349.1|115194_115401_+	hypothetical protein	NA	A0A059T5E7	Listeria_phage	98.5	3.1e-31
WP_003759730.1|115715_116072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990230.1|116482_117142_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_010990231.1|117255_123096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990232.1|123092_125372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003721714.1|125428_125671_+	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
WP_010990233.1|125682_126714_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_003772628.1|126710_128207_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003772625.1|128203_129076_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_003772623.1|129076_130447_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003759763.1|130459_130777_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_003772620.1|130773_131334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990234.1|131477_137459_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_003772617.1|137620_138259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003772614.1|138555_139521_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
WP_003764836.1|139544_140351_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
WP_003728942.1|140372_141284_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_003728941.1|141410_141800_+	DUF956 family protein	NA	NA	NA	NA	NA
WP_003759782.1|141934_142285_+	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
WP_010990235.1|142324_143842_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_010990236.1|143948_144242_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010990237.1|144353_144644_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003764843.1|144657_145290_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_010990238.1|145384_145756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990239.1|146049_148320_+	chitinase ChiB	NA	A0A2K9L3D4	Tupanvirus	32.3	2.0e-38
WP_003772593.1|148359_149562_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003772591.1|149751_151533_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.0	1.7e-53
WP_010990240.1|151525_153268_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	2.8e-56
WP_003772584.1|153410_154244_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
153845:153861	attR	AATTATCCATGTTTTGC	NA	NA	NA	NA
WP_010990241.1|154393_155092_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010990242.1|155061_155757_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003764863.1|155930_156383_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	45.8	6.8e-31
WP_003764864.1|156388_156724_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	2.3e-20
WP_010990243.1|156942_157371_+	hypothetical protein	NA	A8ATZ8	Listeria_phage	46.9	2.1e-13
WP_010990244.1|157382_157799_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	2.0e-21
WP_010990245.1|158078_158468_+	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003759830.1|158480_158993_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	63.4	1.2e-47
WP_003759832.1|159040_159343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045553690.1|159348_159789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990246.1|159775_161644_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	51.6	1.3e-19
WP_010990247.1|161640_162459_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	34.9	1.8e-37
WP_010990248.1|162468_163605_+|tail	phage tail protein	tail	A8ATA9	Listeria_phage	29.3	5.5e-53
>prophage 2
NC_003212	Listeria innocua Clip11262, complete genome	3011208	1242434	1330955	3011208	integrase,tail,plate,capsid,portal,terminase,holin,tRNA,protease	Listeria_phage(64.71%)	109	1252726:1252742	1274542:1274558
WP_010990842.1|1242434_1243682_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	52.0	7.2e-107
WP_010990843.1|1243665_1244496_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_003771572.1|1244631_1245771_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003771574.1|1245850_1246246_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	55.9	3.0e-14
WP_010990844.1|1246562_1247978_-	recombinase family protein	NA	A0A1L2JY12	Aeribacillus_phage	46.5	3.3e-116
WP_010990845.1|1248054_1248726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010990846.1|1248768_1249188_-	ImmA/IrrE family metallo-endopeptidase	NA	A8ATJ8	Listeria_phage	81.0	2.5e-64
WP_010990847.1|1249204_1249633_-	helix-turn-helix transcriptional regulator	NA	A8ATJ9	Listeria_phage	95.1	4.6e-69
WP_010990848.1|1249792_1249978_+	helix-turn-helix transcriptional regulator	NA	A8ATK0	Listeria_phage	90.0	7.8e-26
WP_010990849.1|1250054_1250579_+	hypothetical protein	NA	A8ATK1	Listeria_phage	80.5	1.6e-76
WP_010990850.1|1250591_1250750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990851.1|1250743_1250908_+	hypothetical protein	NA	A8ATK3	Listeria_phage	63.0	2.0e-09
WP_010990852.1|1251057_1251342_+	hypothetical protein	NA	A8ATK4	Listeria_phage	54.2	9.2e-26
WP_041918376.1|1251519_1251747_+	hypothetical protein	NA	A8ATK5	Listeria_phage	93.3	1.3e-30
WP_010990853.1|1251764_1252106_+	hypothetical protein	NA	A8ATK6	Listeria_phage	99.1	3.5e-56
WP_010990854.1|1252092_1254033_+	AAA family ATPase	NA	A8ATK7	Listeria_phage	83.9	2.2e-272
1252726:1252742	attL	AAAAGATTAGAACTTAT	NA	NA	NA	NA
WP_010990855.1|1254036_1254819_+	phage recombination protein Bet	NA	A8ATK8	Listeria_phage	92.7	2.5e-134
WP_049781515.1|1254778_1255516_+	MBL fold metallo-hydrolase	NA	A8ATK9	Listeria_phage	94.3	4.4e-128
WP_010990857.1|1255527_1256445_+	DUF4373 domain-containing protein	NA	A8ATL0	Listeria_phage	98.4	7.8e-167
WP_041918378.1|1256368_1257184_+	ATP-binding protein	NA	A8ATL1	Listeria_phage	99.3	3.1e-143
WP_041918379.1|1257180_1257381_+	hypothetical protein	NA	A8ATL2	Listeria_phage	89.4	4.0e-28
WP_041918428.1|1257367_1257589_+	hypothetical protein	NA	A8ATL3	Listeria_phage	83.8	1.3e-27
WP_010990860.1|1257545_1257785_+	hypothetical protein	NA	A8ATL4	Listeria_phage	95.7	3.0e-30
WP_010990861.1|1257765_1258203_+	RusA family crossover junction endodeoxyribonuclease	NA	A8ATL5	Listeria_phage	94.5	3.7e-74
WP_010990862.1|1258224_1258845_+	hypothetical protein	NA	A8ATL6	Listeria_phage	90.8	1.0e-98
WP_010990863.1|1258885_1259263_+	hypothetical protein	NA	A8ATL7	Listeria_phage	83.3	3.0e-56
WP_010990864.1|1259222_1259399_+	hypothetical protein	NA	A8ATL8	Listeria_phage	93.1	1.9e-21
WP_010990865.1|1259410_1259833_+	hypothetical protein	NA	A8ATL9	Listeria_phage	87.1	9.7e-48
WP_010990866.1|1259829_1261191_+	PcfJ domain-containing protein	NA	A8ATM0	Listeria_phage	99.3	6.6e-263
WP_015987344.1|1261203_1261428_+	hypothetical protein	NA	A8ATM1	Listeria_phage	100.0	3.6e-41
WP_010990867.1|1261427_1262372_+|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	100.0	2.4e-179
WP_010990868.1|1262384_1263065_+	hypothetical protein	NA	A8ATM3	Listeria_phage	100.0	3.2e-125
WP_010990869.1|1263061_1263355_+	hypothetical protein	NA	A8ATM4	Listeria_phage	100.0	4.4e-47
WP_167529958.1|1263490_1263643_+	hypothetical protein	NA	A8ATM6	Listeria_phage	82.0	2.3e-15
WP_010990870.1|1263765_1264293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041918380.1|1264361_1264922_+	phage protein	NA	A8ATM8	Listeria_phage	93.5	2.1e-98
WP_041918381.1|1265002_1265425_+	hypothetical protein	NA	A8ATM9	Listeria_phage	99.3	3.1e-70
WP_010990873.1|1265437_1266205_+	phage antirepressor KilAC domain-containing protein	NA	A8ATN0	Listeria_phage	98.4	7.5e-139
WP_010990874.1|1266854_1267334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990875.1|1267398_1268736_+	ParB N-terminal domain-containing protein	NA	A8ATN5	Listeria_phage	95.3	4.2e-246
WP_010990876.1|1268783_1268981_+	hypothetical protein	NA	A8ATN6	Listeria_phage	98.5	8.9e-28
WP_010990877.1|1269110_1269341_+	hypothetical protein	NA	A8ATN7	Listeria_phage	88.2	1.1e-29
WP_010990878.1|1269368_1269593_+	hypothetical protein	NA	A8ATN8	Listeria_phage	100.0	2.7e-36
WP_010990879.1|1269645_1270482_+	hypothetical protein	NA	C9E2I6	Enterococcus_phage	31.5	1.2e-17
WP_010990880.1|1270468_1271803_+|terminase	PBSX family phage terminase large subunit	terminase	M4ZRM5	Bacillus_phage	54.2	2.8e-125
WP_010990881.1|1271792_1273367_+|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	43.6	7.4e-117
WP_010990882.1|1273353_1275102_+	hypothetical protein	NA	NA	NA	NA	NA
1274542:1274558	attR	AAAAGATTAGAACTTAT	NA	NA	NA	NA
WP_041918382.1|1275103_1275385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990883.1|1275479_1276574_+	hypothetical protein	NA	A0A1B1P7E4	Bacillus_phage	49.7	1.1e-66
WP_010990884.1|1276589_1277519_+|capsid	phage major capsid protein	capsid	A0A1B1P7E3	Bacillus_phage	60.2	3.5e-98
WP_010990885.1|1277524_1277737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990886.1|1277748_1278153_+	DUF3199 family protein	NA	NA	NA	NA	NA
WP_010990887.1|1278154_1278514_+	DUF3599 family protein	NA	NA	NA	NA	NA
WP_041918432.1|1278519_1279020_+	HK97 gp10 family phage protein	NA	A0A249XXA4	Clostridium_phage	48.1	6.4e-38
WP_010990889.1|1279029_1279509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990890.1|1279501_1279738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990891.1|1279739_1281098_+|tail	phage tail sheath family protein	tail	A0A0A7RTT5	Clostridium_phage	40.5	9.1e-79
WP_010990892.1|1281099_1281546_+|tail	phage tail tube protein	tail	A0A0K2CNG3	Brevibacillus_phage	40.6	1.8e-20
WP_010990893.1|1281620_1282109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159097386.1|1282324_1286263_+	hypothetical protein	NA	A0A0N7ACN7	Bacillus_phage	45.4	4.5e-54
WP_010990895.1|1286255_1286939_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010990896.1|1286949_1287927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990897.1|1287926_1288181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141021582.1|1288186_1288603_+	DUF2634 domain-containing protein	NA	A0A2H4J6K5	uncultured_Caudovirales_phage	37.1	1.1e-11
WP_041918435.1|1288621_1289689_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	39.5	5.7e-60
WP_010990900.1|1289699_1290269_+	DUF2313 domain-containing protein	NA	NA	NA	NA	NA
WP_010990901.1|1290265_1290535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990903.1|1291363_1291705_+	hypothetical protein	NA	A8ATI5	Listeria_phage	91.3	2.3e-39
WP_010990905.1|1291890_1292337_+	hypothetical protein	NA	A8ATI7	Listeria_phage	89.9	9.9e-67
WP_010990906.1|1292312_1292759_+	hypothetical protein	NA	A8ATI8	Listeria_phage	95.9	3.5e-64
WP_041918438.1|1292861_1293116_+|holin	phage holin	holin	A8ATJ0	Listeria_phage	94.0	3.6e-37
WP_010990908.1|1293118_1293952_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1S7FZ94	Listeria_phage	44.5	3.6e-46
WP_010990909.1|1294013_1294235_-	helix-turn-helix transcriptional regulator	NA	A8ATJ2	Listeria_phage	97.3	1.6e-33
WP_010990910.1|1294262_1294466_-	hypothetical protein	NA	A8ATJ3	Listeria_phage	97.0	6.8e-31
WP_010990911.1|1294479_1294845_-	hypothetical protein	NA	A8ATJ4	Listeria_phage	98.3	3.1e-58
WP_010990912.1|1295417_1296029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990913.1|1296050_1296416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049781516.1|1296556_1296790_+	hypothetical protein	NA	A8ATC5	Listeria_phage	92.2	1.5e-34
WP_010990914.1|1296786_1297008_+	hypothetical protein	NA	A8ATX1	Listeria_phage	89.7	2.4e-21
WP_010990915.1|1297269_1297803_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_010990916.1|1297818_1298484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990917.1|1298739_1299678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003771581.1|1299792_1301076_+	trigger factor	NA	NA	NA	NA	NA
WP_003766662.1|1301260_1302520_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.9	4.0e-145
WP_003771597.1|1302639_1303206_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003761950.1|1303241_1303811_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003771599.1|1303913_1304456_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003761952.1|1304465_1305329_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_010990918.1|1305325_1306111_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	5.7e-25
WP_010990919.1|1306245_1307106_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003766673.1|1307375_1309454_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	4.1e-107
WP_010990920.1|1309517_1310822_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_010990921.1|1311105_1312008_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.8	5.2e-14
WP_003761964.1|1312029_1312569_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_010990922.1|1312582_1313992_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	4.4e-44
WP_003747412.1|1314012_1314792_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003761973.1|1314894_1315314_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003761975.1|1315336_1315648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990924.1|1315650_1316523_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003761980.1|1316565_1317162_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003761982.1|1317319_1317730_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003771622.1|1317905_1319873_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	1.8e-123
WP_010990925.1|1319869_1322326_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.8	5.1e-104
WP_010990926.1|1322406_1322874_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_010990927.1|1323225_1325088_+	LapB repeat-containing protein	NA	NA	NA	NA	NA
WP_010990928.1|1325195_1327097_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	32.8	6.6e-43
WP_010990929.1|1327305_1328013_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	49.3	1.4e-09
WP_010990930.1|1328236_1329913_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010990931.1|1330037_1330955_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
>prophage 3
NC_003212	Listeria innocua Clip11262, complete genome	3011208	1710970	1767078	3011208	integrase,plate,head,terminase,holin,tRNA,protease	Listeria_phage(94.74%)	84	1707860:1707878	1772901:1772919
1707860:1707878	attL	GATTTTTTGGAAATAAAGC	NA	NA	NA	NA
WP_003772139.1|1710970_1711465_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_041918386.1|1711642_1712296_-	VanZ family protein	NA	NA	NA	NA	NA
WP_010991651.1|1712667_1712907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041918388.1|1713412_1713646_-	hypothetical protein	NA	A8ATC5	Listeria_phage	89.6	9.2e-32
WP_010991652.1|1713957_1714335_+	anti-CRISPR protein AcrIIA3	NA	A0A059T686	Listeria_phage	96.0	1.2e-65
WP_010991653.1|1714368_1714719_+	AcrIIA2 family anti-CRISPR protein	NA	Q9T195	Listeria_phage	94.0	2.6e-54
WP_010991654.1|1714723_1715173_+	anti-CRISPR protein AcrIIA1	NA	A8ATW7	Listeria_phage	85.2	4.2e-65
WP_010991655.1|1715215_1716142_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	R4ICC5	Listeria_phage	85.4	2.7e-159
WP_010991656.1|1716144_1716378_-	hypothetical protein	NA	R4IBI3	Listeria_phage	88.3	3.5e-31
WP_010991657.1|1716377_1716638_-|holin	phage holin	holin	A0A059T684	Listeria_phage	81.4	7.6e-35
WP_010991658.1|1716648_1716864_-	LysM peptidoglycan-binding domain-containing protein	NA	A8ATI9	Listeria_phage	87.3	3.8e-24
WP_010991659.1|1716882_1717329_-	hypothetical protein	NA	A8ATI8	Listeria_phage	89.9	2.3e-63
WP_010991660.1|1717304_1717751_-	hypothetical protein	NA	A8ATI7	Listeria_phage	91.2	6.9e-68
WP_010991661.1|1717937_1718279_-	hypothetical protein	NA	A8ATI5	Listeria_phage	86.0	2.2e-34
WP_010991662.1|1718284_1719013_-	hypothetical protein	NA	A8ATI4	Listeria_phage	99.6	7.9e-138
WP_010991663.1|1719033_1719675_-	hypothetical protein	NA	A8ATI3	Listeria_phage	100.0	9.1e-114
WP_010991664.1|1719664_1720816_-|plate	baseplate J/gp47 family protein	plate	A8ATI2	Listeria_phage	100.0	3.2e-210
WP_010991665.1|1720808_1721171_-	DUF2634 domain-containing protein	NA	A8ATI1	Listeria_phage	100.0	1.4e-58
WP_010991666.1|1721167_1721506_-	hypothetical protein	NA	A8ATI0	Listeria_phage	100.0	5.4e-57
WP_010991667.1|1721506_1722313_-	hypothetical protein	NA	A8ATH9	Listeria_phage	100.0	5.4e-148
WP_010991668.1|1722312_1722678_-	hypothetical protein	NA	A8ATH8	Listeria_phage	100.0	3.2e-63
WP_010991669.1|1722677_1723241_-	LysM peptidoglycan-binding domain-containing protein	NA	A8ATH7	Listeria_phage	100.0	9.2e-94
WP_010991670.1|1723246_1727962_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	99.9	0.0e+00
WP_003731526.1|1727963_1728176_-	hypothetical protein	NA	A8ATH5	Listeria_phage	100.0	3.7e-32
WP_003731525.1|1728138_1728495_-	hypothetical protein	NA	A8ATH4	Listeria_phage	100.0	1.4e-60
WP_003731524.1|1728547_1728946_-	hypothetical protein	NA	A8ATH3	Listeria_phage	100.0	4.7e-68
WP_003731523.1|1728962_1729958_-	DUF3383 family protein	NA	A8ATH2	Listeria_phage	100.0	1.9e-182
WP_003731522.1|1729962_1730451_-	hypothetical protein	NA	A8ATH1	Listeria_phage	100.0	3.2e-87
WP_003731521.1|1730440_1730815_-	hypothetical protein	NA	A8ATH0	Listeria_phage	100.0	4.6e-65
WP_003731520.1|1730814_1731414_-	hypothetical protein	NA	A8ATG9	Listeria_phage	100.0	2.6e-110
WP_003731519.1|1731413_1731749_-	DUF4054 domain-containing protein	NA	A8ATG8	Listeria_phage	100.0	2.1e-53
WP_003731518.1|1731760_1732147_-	hypothetical protein	NA	A8ATG7	Listeria_phage	97.7	1.0e-64
WP_003731517.1|1732169_1733075_-	DUF2184 domain-containing protein	NA	A8ATG6	Listeria_phage	99.0	2.1e-164
WP_003731516.1|1733095_1733545_-	hypothetical protein	NA	A8ATG5	Listeria_phage	100.0	9.0e-76
WP_003731515.1|1733544_1734654_-	DUF2213 domain-containing protein	NA	A8ATG4	Listeria_phage	100.0	6.5e-176
WP_003731514.1|1734702_1734873_-	hypothetical protein	NA	A8ATG3	Listeria_phage	100.0	1.1e-26
WP_003731513.1|1734869_1736279_-|head	phage head morphogenesis protein	head	A8ATG2	Listeria_phage	100.0	7.8e-267
WP_003731512.1|1736271_1737657_-	DUF1073 domain-containing protein	NA	A8ATG1	Listeria_phage	100.0	1.1e-265
WP_003731511.1|1737670_1739131_-|terminase	phage terminase large subunit	terminase	A8ATG0	Listeria_phage	100.0	4.4e-289
WP_003731510.1|1739108_1739993_-	hypothetical protein	NA	A8ATF9	Listeria_phage	99.3	6.6e-139
WP_010990878.1|1740038_1740263_-	hypothetical protein	NA	A8ATN8	Listeria_phage	100.0	2.7e-36
WP_010991671.1|1740290_1740521_-	hypothetical protein	NA	A8ATN7	Listeria_phage	100.0	9.7e-34
WP_003731507.1|1740651_1740849_-	hypothetical protein	NA	A8ATN6	Listeria_phage	100.0	5.2e-28
WP_010991672.1|1740896_1742234_-	ParB N-terminal domain-containing protein	NA	A8ATN5	Listeria_phage	99.3	2.0e-256
WP_003731505.1|1742230_1742524_-	hypothetical protein	NA	A8ATN4	Listeria_phage	100.0	2.3e-48
WP_010991673.1|1743051_1743819_-	phage antirepressor KilAC domain-containing protein	NA	A8ATN0	Listeria_phage	98.8	1.5e-139
WP_041918381.1|1743831_1744254_-	hypothetical protein	NA	A8ATM9	Listeria_phage	99.3	3.1e-70
WP_010991674.1|1744334_1744895_-	hypothetical protein	NA	A8ATM8	Listeria_phage	98.9	3.4e-104
WP_010991675.1|1744906_1745158_-	DUF3850 domain-containing protein	NA	A8ATM7	Listeria_phage	100.0	4.7e-42
WP_003731499.1|1745154_1745307_-	hypothetical protein	NA	A8ATM6	Listeria_phage	100.0	8.1e-21
WP_015987345.1|1745293_1745434_-	hypothetical protein	NA	A8ATM5	Listeria_phage	100.0	2.3e-14
WP_010990869.1|1745451_1745745_-	hypothetical protein	NA	A8ATM4	Listeria_phage	100.0	4.4e-47
WP_010990868.1|1745741_1746422_-	hypothetical protein	NA	A8ATM3	Listeria_phage	100.0	3.2e-125
WP_010990867.1|1746434_1747379_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	100.0	2.4e-179
WP_015987344.1|1747378_1747603_-	hypothetical protein	NA	A8ATM1	Listeria_phage	100.0	3.6e-41
WP_010990866.1|1747615_1748977_-	PcfJ domain-containing protein	NA	A8ATM0	Listeria_phage	99.3	6.6e-263
WP_010990865.1|1748973_1749396_-	hypothetical protein	NA	A8ATL9	Listeria_phage	87.1	9.7e-48
WP_010990864.1|1749407_1749584_-	hypothetical protein	NA	A8ATL8	Listeria_phage	93.1	1.9e-21
WP_010990863.1|1749543_1749921_-	hypothetical protein	NA	A8ATL7	Listeria_phage	83.3	3.0e-56
WP_010990862.1|1749961_1750582_-	hypothetical protein	NA	A8ATL6	Listeria_phage	90.8	1.0e-98
WP_010990861.1|1750603_1751041_-	RusA family crossover junction endodeoxyribonuclease	NA	A8ATL5	Listeria_phage	94.5	3.7e-74
WP_010990860.1|1751021_1751261_-	hypothetical protein	NA	A8ATL4	Listeria_phage	95.7	3.0e-30
WP_041918428.1|1751217_1751439_-	hypothetical protein	NA	A8ATL3	Listeria_phage	83.8	1.3e-27
WP_041918379.1|1751425_1751626_-	hypothetical protein	NA	A8ATL2	Listeria_phage	89.4	4.0e-28
WP_041918378.1|1751622_1752438_-	ATP-binding protein	NA	A8ATL1	Listeria_phage	99.3	3.1e-143
WP_010990857.1|1752361_1753279_-	DUF4373 domain-containing protein	NA	A8ATL0	Listeria_phage	98.4	7.8e-167
WP_049781515.1|1753290_1754028_-	MBL fold metallo-hydrolase	NA	A8ATK9	Listeria_phage	94.3	4.4e-128
WP_010990855.1|1753987_1754770_-	phage recombination protein Bet	NA	A8ATK8	Listeria_phage	92.7	2.5e-134
WP_041918389.1|1754773_1756714_-	AAA family ATPase	NA	A8ATK7	Listeria_phage	84.4	9.1e-274
WP_010990853.1|1756700_1757042_-	hypothetical protein	NA	A8ATK6	Listeria_phage	99.1	3.5e-56
WP_010990938.1|1757059_1757287_-	hypothetical protein	NA	A8ATK5	Listeria_phage	97.3	2.0e-31
WP_003731476.1|1757464_1757755_-	hypothetical protein	NA	A8ATK4	Listeria_phage	100.0	4.6e-49
WP_159097387.1|1757837_1757981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003731474.1|1758073_1758367_-	helix-turn-helix domain-containing protein	NA	A8ATK2	Listeria_phage	100.0	2.3e-48
WP_003731473.1|1758381_1758906_-	hypothetical protein	NA	A8ATK1	Listeria_phage	100.0	5.5e-93
WP_010990939.1|1758977_1759202_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J4N8	uncultured_Caudovirales_phage	54.9	2.3e-11
WP_010990940.1|1759362_1759803_+	helix-turn-helix transcriptional regulator	NA	A0A2P1JU09	Anoxybacillus_phage	44.4	6.0e-24
WP_010990941.1|1759825_1760248_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0M4RD70	Bacillus_phage	50.8	4.5e-29
WP_010990942.1|1760283_1760832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010990943.1|1760913_1762089_+|integrase	site-specific integrase	integrase	A8ATJ6	Listeria_phage	96.7	1.9e-218
WP_003762546.1|1762249_1763134_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_003772143.1|1763213_1763963_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_167529959.1|1764157_1764544_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010990945.1|1764666_1767078_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	70.2	0.0e+00
1772901:1772919	attR	GCTTTATTTCCAAAAAATC	NA	NA	NA	NA
>prophage 4
NC_003212	Listeria innocua Clip11262, complete genome	3011208	1892543	1900826	3011208		Prochlorococcus_phage(33.33%)	8	NA	NA
WP_003762851.1|1892543_1893110_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.7	3.7e-26
WP_003769067.1|1893106_1894153_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	1.1e-60
WP_010991001.1|1894171_1895599_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	6.2e-54
WP_010991002.1|1895583_1897803_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.0	1.3e-159
WP_010991003.1|1897795_1898479_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1898482_1898728_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_010991004.1|1898739_1899453_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	39.6	9.4e-43
WP_010991005.1|1899533_1900826_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	1.1e-17
>prophage 5
NC_003212	Listeria innocua Clip11262, complete genome	3011208	2406901	2446744	3011208	integrase,tail,plate,terminase,holin	Listeria_phage(96.55%)	62	2400503:2400520	2449860:2449877
2400503:2400520	attL	TGCTTCTTCCATATCTGG	NA	NA	NA	NA
WP_010991147.1|2406901_2407135_-	hypothetical protein	NA	A8ATX0	Listeria_phage	98.7	2.1e-36
WP_010991148.1|2407381_2408278_-	Abi family protein	NA	A0A1S5S8T0	Streptococcus_phage	23.9	3.3e-13
WP_010991149.1|2408640_2409591_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A0B5CTW5	Listeria_phage	98.4	2.1e-183
WP_010991150.1|2409590_2409872_-|holin	phage holin	holin	A0A059T664	Listeria_phage	100.0	3.0e-45
WP_003733957.1|2409871_2410177_-	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_003740843.1|2410217_2410364_-	XkdX family protein	NA	A0A0B5CYN8	Listeria_phage	100.0	1.5e-19
WP_003725055.1|2410364_2410706_-	hypothetical protein	NA	A8ASL1	Listeria_phage	100.0	4.2e-57
WP_003740845.1|2410702_2411776_-|plate	BppU family phage baseplate upper protein	plate	A0A0B5D119	Listeria_phage	100.0	2.5e-196
WP_010991151.1|2411772_2412801_-	hypothetical protein	NA	A0A0B5D0C2	Listeria_phage	100.0	2.2e-194
WP_003740854.1|2412797_2413811_-|tail	phage tail protein	tail	A0A0B5CYL4	Listeria_phage	100.0	1.2e-187
WP_003740856.1|2413823_2414648_-|tail	phage tail family protein	tail	A0A0B5CTY7	Listeria_phage	98.9	8.6e-157
WP_010991152.1|2414651_2419457_-|tail	phage tail tape measure protein	tail	A0A0B5CTS6	Listeria_phage	97.3	0.0e+00
WP_072218650.1|2419461_2419773_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	98.9	1.2e-42
WP_010991153.1|2419769_2420201_-	hypothetical protein	NA	A8ATV7	Listeria_phage	95.8	1.1e-70
WP_010991154.1|2420250_2420937_-	Ig domain-containing protein	NA	A8ATV6	Listeria_phage	93.0	9.5e-109
WP_010991155.1|2420941_2421313_-	hypothetical protein	NA	A0A0B5CTY4	Listeria_phage	99.2	5.5e-63
WP_023548511.1|2421309_2421627_-	HK97 gp10 family phage protein	NA	A8ATV4	Listeria_phage	97.1	2.7e-50
WP_010991156.1|2421616_2421982_-	hypothetical protein	NA	A8ATV3	Listeria_phage	95.9	3.5e-62
WP_003740890.1|2421981_2422335_-	hypothetical protein	NA	A8ATV2	Listeria_phage	98.3	2.4e-60
WP_010991157.1|2422335_2422491_-	hypothetical protein	NA	A0A0B5CYK6	Listeria_phage	96.1	1.7e-18
WP_003740892.1|2422504_2423377_-	hypothetical protein	NA	A0A0B5CTX8	Listeria_phage	97.2	7.4e-159
WP_003740894.1|2423399_2423954_-	hypothetical protein	NA	A8ATU9	Listeria_phage	89.1	1.7e-84
WP_003725070.1|2424048_2425092_-	hypothetical protein	NA	A0A0B5D111	Listeria_phage	98.0	4.8e-197
WP_010991158.1|2425096_2426653_-	hypothetical protein	NA	A8ATU7	Listeria_phage	97.5	6.8e-296
WP_003725072.1|2426667_2428014_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	94.1	2.7e-253
WP_003733714.1|2427979_2428720_-	hypothetical protein	NA	A8ATU5	Listeria_phage	98.8	7.0e-134
WP_003725074.1|2428759_2428987_-	hypothetical protein	NA	A0A0B5CTV3	Listeria_phage	94.7	1.8e-32
WP_010991160.1|2429268_2429841_-	sigma-70 family RNA polymerase sigma factor	NA	A0A0B5D145	Listeria_phage	84.7	3.2e-86
WP_010991161.1|2429928_2430084_-	DUF3954 domain-containing protein	NA	A0A0B5D0E9	Listeria_phage	96.1	5.7e-22
WP_003734996.1|2430124_2430508_-	DUF2481 family protein	NA	A8ASP8	Listeria_phage	56.7	2.9e-35
WP_010991162.1|2430511_2430916_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	83.6	1.7e-57
WP_010991163.1|2430860_2431043_-	hypothetical protein	NA	A8ASP6	Listeria_phage	75.9	1.4e-14
WP_010991164.1|2431064_2431547_-	single-stranded DNA-binding protein	NA	A0A059T5E0	Listeria_phage	82.5	2.5e-68
WP_010991165.1|2431923_2432103_-	hypothetical protein	NA	A8ATE3	Listeria_phage	86.4	8.6e-22
WP_010991166.1|2432099_2432270_-	hypothetical protein	NA	A0A076G660	Listeria_phage	55.1	7.4e-07
WP_149021276.1|2432266_2432449_-	DUF1642 domain-containing protein	NA	NA	NA	NA	NA
WP_010991167.1|2432411_2432621_-	hypothetical protein	NA	A0A059T695	Listeria_phage	91.3	4.2e-28
WP_041918396.1|2432622_2432817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010991168.1|2432835_2432982_-	hypothetical protein	NA	A8ATZ0	Listeria_phage	97.9	2.3e-20
WP_010991170.1|2433732_2434677_-|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	96.8	1.0e-174
WP_010991171.1|2434687_2435401_-	SAM-dependent DNA methyltransferase	NA	A8ATD5	Listeria_phage	99.6	4.1e-131
WP_003769985.1|2435421_2435697_-	hypothetical protein	NA	A0A059T7V3	Listeria_phage	87.4	2.9e-37
WP_010991172.1|2435693_2436626_-	DnaD domain-containing protein	NA	A8ATY7	Listeria_phage	98.4	3.0e-166
WP_010991173.1|2436645_2437461_-	recombinase RecT	NA	A8ATY6	Listeria_phage	98.9	3.5e-150
WP_010991174.1|2437460_2438420_-	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	99.4	1.3e-177
WP_010989962.1|2438651_2438840_-	hypothetical protein	NA	Q9T175	Listeria_phage	79.0	2.0e-21
WP_010991175.1|2438947_2439163_-	hypothetical protein	NA	Q9T176	Listeria_phage	91.5	2.2e-27
WP_010991176.1|2439159_2439693_-	hypothetical protein	NA	A0A0B5D173	Listeria_phage	87.3	2.3e-78
WP_010991177.1|2439815_2440586_-	phage repressor protein/antirepressor Ant	NA	A8ATY0	Listeria_phage	71.7	7.4e-102
WP_023552476.1|2440649_2440892_+	hypothetical protein	NA	A0A059T7Q3	Listeria_phage	83.8	2.8e-31
WP_010991178.1|2440884_2441046_-	hypothetical protein	NA	A0A059T7X7	Listeria_phage	77.4	2.0e-14
WP_010991179.1|2441045_2441312_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	69.7	1.8e-23
WP_003733635.1|2441323_2441518_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	93.8	6.9e-25
WP_010991180.1|2441521_2441773_-	helix-turn-helix transcriptional regulator	NA	A8ATX6	Listeria_phage	98.8	8.4e-39
WP_010991181.1|2441921_2442404_+	helix-turn-helix transcriptional regulator	NA	A8ATX5	Listeria_phage	78.0	1.9e-31
WP_003733638.1|2442560_2442728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003747290.1|2442783_2443002_+	hypothetical protein	NA	A0A059T6E3	Listeria_phage	81.9	2.4e-26
WP_003727738.1|2443017_2443740_+	hypothetical protein	NA	A0A059T7P9	Listeria_phage	100.0	1.3e-105
WP_010991182.1|2443760_2444468_+	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	74.5	6.3e-92
WP_010991183.1|2444532_2445891_+	recombinase family protein	NA	Q9T193	Listeria_phage	97.6	4.3e-254
WP_010991184.1|2445881_2446349_+	competence protein ComK	NA	NA	NA	NA	NA
WP_003749261.1|2446396_2446744_-	helix-turn-helix transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
2449860:2449877	attR	TGCTTCTTCCATATCTGG	NA	NA	NA	NA
>prophage 6
NC_003212	Listeria innocua Clip11262, complete genome	3011208	2587043	2644096	3011208	integrase,tail,plate,head,portal,terminase,holin,protease,capsid	Listeria_phage(59.02%)	75	2604448:2604464	2633502:2633518
WP_003772372.1|2587043_2587379_+	hypothetical protein	NA	S5MNN8	Brevibacillus_phage	77.1	7.1e-17
WP_003769913.1|2587879_2588086_+	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	82.8	1.3e-16
WP_010991148.1|2588160_2589057_-	Abi family protein	NA	A0A1S5S8T0	Streptococcus_phage	23.9	3.3e-13
WP_010991149.1|2589419_2590370_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A0B5CTW5	Listeria_phage	98.4	2.1e-183
WP_010991150.1|2590369_2590651_-|holin	phage holin	holin	A0A059T664	Listeria_phage	100.0	3.0e-45
WP_003733957.1|2590650_2590956_-	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_003740843.1|2590996_2591143_-	XkdX family protein	NA	A0A0B5CYN8	Listeria_phage	100.0	1.5e-19
WP_003725055.1|2591143_2591485_-	hypothetical protein	NA	A8ASL1	Listeria_phage	100.0	4.2e-57
WP_010991258.1|2591481_2592603_-|plate	BppU family phage baseplate upper protein	plate	Q8W5Z4	Listeria_phage	78.0	4.2e-130
WP_010991259.1|2592599_2594741_-|tail	phage tail protein	tail	Q8W5Z5	Listeria_phage	54.1	2.7e-210
WP_010991260.1|2594722_2595463_-	hypothetical protein	NA	Q8W5Z6	Listeria_phage	23.5	1.2e-08
WP_010991261.1|2595459_2598741_-|tail	phage tail tape measure protein	tail	D2XR25	Bacillus_phage	43.5	8.1e-73
WP_010991263.1|2598964_2599321_-	hypothetical protein	NA	D2XR24	Bacillus_phage	55.9	5.3e-31
WP_010991264.1|2599364_2599943_-|tail	phage tail protein	tail	A0A0U4JWV5	Exiguobacterium_phage	63.8	6.0e-64
WP_010991265.1|2599943_2600267_-	hypothetical protein	NA	A0A290GDX2	Caldibacillus_phage	48.6	6.1e-18
WP_010991266.1|2600263_2600617_-	HK97 gp10 family phage protein	NA	A0A0U4II15	Exiguobacterium_phage	40.2	2.3e-18
WP_010991267.1|2600623_2600929_-|head	phage head closure protein	head	Q0H236	Geobacillus_phage	49.0	1.5e-21
WP_010991268.1|2600915_2601203_-	hypothetical protein	NA	A6XMJ8	Bacillus_virus	64.7	5.6e-23
WP_031659892.1|2601202_2601382_-	hypothetical protein	NA	Q0H260	Geobacillus_phage	53.3	2.4e-11
WP_010991269.1|2601386_2602574_-|capsid	phage major capsid protein	capsid	A0A2H4J3W9	uncultured_Caudovirales_phage	58.8	2.9e-89
WP_010991270.1|2602564_2603149_-|head,protease	HK97 family phage prohead protease	head,protease	Q0H262	Geobacillus_phage	53.8	8.8e-47
WP_010991271.1|2603145_2604327_-|portal	phage portal protein	portal	Q0H263	Geobacillus_phage	60.2	2.0e-130
WP_010991272.1|2604340_2606092_-|terminase	terminase large subunit	terminase	A6XMJ4	Bacillus_virus	74.6	1.4e-260
2604448:2604464	attL	CGCCGTCACCATCCACT	NA	NA	NA	NA
WP_010991273.1|2606088_2606463_-|terminase	P27 family phage terminase small subunit	terminase	A0A0U4JV93	Exiguobacterium_phage	57.0	6.7e-24
WP_010991274.1|2606503_2606878_-	HNH endonuclease	NA	C5J957	Streptococcus_phage	50.9	2.3e-24
WP_010991275.1|2607195_2607939_-	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_003731654.1|2608036_2608462_-	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	99.3	1.8e-73
WP_010991276.1|2608474_2608702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041918446.1|2608918_2609452_-	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	81.1	1.0e-78
WP_010991278.1|2609565_2609880_-	VRR-NUC domain-containing protein	NA	A8ATF4	Listeria_phage	99.0	2.0e-53
WP_010991279.1|2610168_2612442_-	primase	NA	R4IBW2	Listeria_phage	99.9	0.0e+00
WP_010991280.1|2612464_2612947_-	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	99.4	1.9e-87
WP_010991281.1|2612969_2614226_-	DEAD/DEAH box helicase	NA	R4IBK4	Listeria_phage	100.0	1.4e-230
WP_010991282.1|2614289_2614979_-	AAA family ATPase	NA	R4IDY8	Listeria_phage	100.0	1.2e-130
WP_010991283.1|2614991_2615471_-	siphovirus Gp157 family protein	NA	R4IBM0	Listeria_phage	100.0	7.1e-79
WP_041918402.1|2615472_2615856_-	hypothetical protein	NA	R4IBW1	Listeria_phage	99.2	7.2e-66
WP_010991284.1|2615852_2616026_-	hypothetical protein	NA	A0A059T5G3	Listeria_phage	94.7	9.8e-23
WP_041918403.1|2616022_2616292_-	hypothetical protein	NA	Q8W5W6	Listeria_phage	65.9	1.5e-22
WP_010991286.1|2616493_2616715_-	hypothetical protein	NA	A0A059T5G2	Listeria_phage	93.2	2.0e-36
WP_041918404.1|2616899_2617106_-	hypothetical protein	NA	A0A059T6C7	Listeria_phage	92.6	2.2e-29
WP_003762548.1|2617102_2617618_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	46.2	2.2e-33
WP_041918405.1|2617614_2617800_-	hypothetical protein	NA	Q8W5X1	Listeria_phage	91.1	1.1e-24
WP_003762549.1|2617816_2618110_-	hypothetical protein	NA	A8ATM4	Listeria_phage	81.4	9.1e-37
WP_010991288.1|2618106_2618295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010991289.1|2618287_2618686_-	hypothetical protein	NA	A0A0B5CYQ9	Listeria_phage	92.9	3.4e-66
WP_010991290.1|2618682_2619363_-	hypothetical protein	NA	A8ATD7	Listeria_phage	96.5	1.4e-120
WP_010991291.1|2619375_2620320_-|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	96.2	1.2e-173
WP_010991171.1|2620330_2621044_-	SAM-dependent DNA methyltransferase	NA	A8ATD5	Listeria_phage	99.6	4.1e-131
WP_010991292.1|2621064_2621352_-	hypothetical protein	NA	A0A059T7V3	Listeria_phage	90.5	2.7e-41
WP_009929542.1|2621488_2621641_-	hypothetical protein	NA	A8ATD4	Listeria_phage	100.0	1.5e-19
WP_041918406.1|2621875_2622061_-	hypothetical protein	NA	A8ATD3	Listeria_phage	96.7	1.1e-27
WP_003730996.1|2622063_2622306_-	hypothetical protein	NA	A8ATD2	Listeria_phage	93.8	3.9e-41
WP_003730995.1|2622327_2622519_-	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	87.1	5.4e-22
WP_010991293.1|2622585_2622789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010991294.1|2623189_2623513_+	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	72.9	5.9e-37
WP_010991295.1|2623529_2623982_+	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	91.3	1.1e-78
WP_010991296.1|2624032_2624521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010991297.1|2624652_2625807_+|integrase	site-specific integrase	integrase	Q8W5Y3	Listeria_phage	90.9	3.0e-200
WP_010991298.1|2626100_2627537_-	lytic polysaccharide monooxygenase	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	38.8	1.4e-24
WP_003768278.1|2627694_2628291_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.4	5.0e-58
WP_010991299.1|2628341_2629733_-	amino acid permease	NA	NA	NA	NA	NA
WP_010991300.1|2629972_2630989_-	NADPH dehydrogenase NamA	NA	NA	NA	NA	NA
WP_003768282.1|2631014_2631986_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_010991301.1|2631993_2632962_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	42.9	8.8e-68
WP_003763899.1|2632963_2633839_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.5	4.9e-09
2633502:2633518	attR	AGTGGATGGTGACGGCG	NA	NA	NA	NA
WP_010991302.1|2633947_2635678_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	52.6	1.5e-171
WP_010991303.1|2635722_2636784_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_041918407.1|2636799_2637783_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.4	1.1e-52
WP_003772358.1|2637898_2638858_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	54.1	1.5e-88
WP_010991305.1|2638935_2640411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003772356.1|2640495_2640993_-	acyltransferase	NA	NA	NA	NA	NA
WP_003763908.1|2640996_2641650_-	pyrophosphatase PpaX	NA	NA	NA	NA	NA
WP_003772355.1|2641692_2642526_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_003763911.1|2642617_2643556_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_003763913.1|2643742_2644096_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 1
NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	81905	819	65305	81905	integrase,transposase	Streptococcus_phage(42.31%)	57	22096:22155	73513:74319
WP_011011009.1|819_2046_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	60.4	5.2e-134
WP_149021279.1|2130_3306_-	class I SAM-dependent methyltransferase	NA	A0A240F4T3	Ochrobactrum_phage	42.0	1.2e-63
WP_012952173.1|3347_3692_-	TnpV protein	NA	NA	NA	NA	NA
WP_011011011.1|4404_4803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728486.1|4976_5312_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPK3	Marinitoga_camini_virus	35.0	2.8e-05
WP_011011012.1|5349_5880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011011013.1|5993_6758_-	Fic family protein	NA	A0A0G3Y4Q5	Ostreid_herpesvirus	28.7	1.7e-05
WP_031641939.1|6777_7140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011011014.1|7150_8491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011011015.1|8483_8924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011011016.1|8935_9175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011011017.1|9631_10312_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	1.0e-126
WP_011011018.1|10454_10976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011011019.1|10990_11566_-	ComF family protein	NA	NA	NA	NA	NA
WP_011011020.1|11581_12565_-	protein rep	NA	NA	NA	NA	NA
WP_011011021.1|13315_13654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011011023.1|15480_20190_-	DEAD/DEAH box helicase	NA	A0A2H4UTW8	Bodo_saltans_virus	28.3	3.6e-50
WP_011011024.1|20186_20732_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_011011025.1|20731_21892_-	replication initiation protein	NA	A0A1V0E006	Clostridioides_phage	25.2	3.0e-06
22096:22155	attL	GGTTCTGTTGCAAAGTTCAAAGAAGTAAAATGATATCTCAACTATTTTCTAATTTTAAGC	NA	NA	NA	NA
WP_003759224.1|22149_22830_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	69.9	1.5e-93
WP_003725275.1|23025_23319_-|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	36.2	1.5e-07
WP_003725276.1|23376_23652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|26726_27407_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_003725278.1|28514_29072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159097391.1|29072_29303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|29364_30045_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_002333381.1|30419_30713_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	42.2	4.9e-14
WP_002333380.1|30714_31086_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
WP_011011029.1|31219_31585_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	43.3	2.2e-19
WP_002333378.1|31620_33363_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
WP_041918452.1|33446_34508_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_002339824.1|34561_35608_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_011011031.1|35628_37302_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002333374.1|37326_37506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|38439_39120_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_003728481.1|39311_40676_+	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.5	1.9e-07
WP_011011034.1|40921_41791_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003750113.1|42150_42471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011011035.1|42661_43426_+	UPF0236 family protein	NA	NA	NA	NA	NA
WP_003728476.1|43888_45772_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.3	5.6e-87
WP_002319817.1|45891_46572_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_049781576.1|47608_50284_+	sensor histidine kinase KdpD	NA	A0A2K9L0Z8	Tupanvirus	25.1	1.1e-14
WP_011011037.1|50276_50999_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_072235495.1|51209_51287_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_011011038.1|51306_53028_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_011011039.1|53041_55102_+	potassium-transporting ATPase subunit KdpB	NA	E4ZFI9	Streptococcus_phage	26.4	9.6e-40
WP_041918453.1|55139_55478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011011041.1|55500_56139_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA	NA
WP_149021280.1|56347_56608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011011042.1|56843_57395_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.4e-40
WP_011011043.1|57625_58483_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_003725298.1|58475_59912_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	24.8	9.4e-18
WP_003725299.1|60070_60670_+	recombinase family protein	NA	I1ZBD6	Salisaeta_icosahedral_phage	31.8	1.8e-15
WP_003726380.1|60943_61303_+	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	48.2	5.4e-23
WP_003726381.1|61299_63417_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	62.6	5.3e-235
WP_023558764.1|64061_64565_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	35.9	6.6e-19
WP_011011045.1|64624_65305_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	69.5	5.5e-93
73513:74319	attR	GCTTAAAATTAGAAAATAGTTGAGATATCATTTTACTTCTTTGAACTTTGCAACAGAACCAGAAAATCAACAACTCAAAAAATGGATTTTAGAGATTTATAGCCAAGCCAAAAAGCGCTTTGGCGCTGCTAAGATTCAAGTTGTTTTAAAGCGTGATTATGGCGTATCCATTAGTTTAGGTCGGGTTTATCGCCTACTTCGTCAACTTCAATTGCCTAAAATGTCCACCGTAAAACCAAGCTATCAAAAGAGAAAAGTGGATGAAGCACCTCATGACTCTTGTCCTAATCATTTAAAGCAAGCGTTTAATCCACCTGCACCTAATCAGGTTTGGACAACCGATTTTTCTTACATCCCTGTAGGAAAAAAAGGCTTTGTTTATTTATGCATTGTCATGAACTTATTCTCACGAAAAATCATTGCCTGGCAAGTCGCCCATAAGATCAATACAGATTTAGCTCTTCAAACACTGGAAGTTGCCTATAAACAACGGCGACCGTCTCAAACTGTCATGATTCACAGTGACCGAGGGTCACAATATACAGCCAAAGCGTATCGCAGATGGTTAGACGAGCATGATCTGCTCGCCTCTTATTCCAAAAAGGCTTATCCTTGGGATAACGCTGTCACCGAAGCCTTCTTTAAGTATATGAAAAAAGAAGAACTAGATCGGCGAGCTTTTTCTTCCATTCAAGATGTGCAATTAGCTTGTTTTGAATATATTGAAAGCTTTTATAATCGGCACCGTCCTCACTCGACTATTAACATGCTAACTCCTGAAGAAAAAGAAAATTTTTTATTTCAGCA	NA	NA	NA	NA
