The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	27282	70036	4086189	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003814410.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	77634	136108	4086189	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	164894	279804	4086189	protease,transposase,tRNA	Klosneuvirus(12.5%)	96	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929667.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929669.1|184325_188024_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188084_188648_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188655_189078_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189105_189525_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189553_190027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190126_190624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190778_193049_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193097_194330_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194428_195379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195481_196117_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|196113_197007_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197401_198502_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198583_198958_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|199017_201882_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202026_202767_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202836_204048_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204076_205045_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205658_206609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|206728_207679_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|207793_208795_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|208885_209452_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|209770_211684_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|211725_213156_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929685.1|213268_214681_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|214697_215393_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929686.1|215611_216562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|216660_217611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|217635_218535_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|218689_219238_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|219276_219996_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|220067_223010_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|223603_226399_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|226856_227789_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|227900_229250_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|229281_230007_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|230057_230909_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|231038_231725_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|231724_232369_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|232425_232701_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|232726_233023_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|233068_233848_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|233853_234894_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|234998_235322_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_005013747.1|235478_236429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236527_237325_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238274_238685_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239706_240450_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240493_241537_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241707_243810_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245220_246177_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246195_246687_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246683_248039_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248039_248738_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248734_249436_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249688_250738_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250843_251785_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251781_253671_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253757_254396_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254538_255924_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255854_256391_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256542_257934_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257950_258931_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259066_260050_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|260114_261014_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|261120_262875_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262882_264007_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264020_265001_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265731_266682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267241_267787_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267870_269490_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269505_270660_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270673_270799_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270795_272547_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272543_274223_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274285_274834_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275976_276255_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277298_278249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278526_278688_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278695_278836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279354_279804_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
>prophage 4
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	391016	447471	4086189	transposase	Heterosigma_akashiwo_virus(14.29%)	49	NA	NA
WP_005012067.1|391016_391967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|392055_392970_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|392966_393626_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|393715_394639_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|394644_395100_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|395096_396200_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|396155_396428_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|396387_398007_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|398003_399062_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|399191_399686_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|399778_400756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|400951_402157_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|402153_403665_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|403680_404994_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929787.1|405184_405364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|405773_406508_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|408952_409903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|410034_410433_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|410843_411314_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|411402_411747_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|411846_413247_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|415035_415554_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|415664_416420_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929790.1|416615_417848_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|417840_418626_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|418692_419664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|419674_420652_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|420777_421950_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|421976_423005_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|423070_424264_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|426045_426996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|427094_428000_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|428175_428379_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|428889_429330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|429359_430019_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248869.1|430104_431721_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|431741_433205_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|433235_436622_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|436763_437168_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|437311_438298_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|438284_438566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|439311_440544_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929804.1|440543_441038_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|441169_442132_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|442109_443363_-	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|443484_444435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|444989_445364_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|445438_446497_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|446520_447471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	483145	525100	4086189	integrase,transposase	Bacillus_virus(11.11%)	38	490556:490574	535931:535949
WP_005012067.1|483145_484096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|484212_485280_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_010929828.1|485355_488484_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|488991_489957_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|489959_490631_+	HAD family hydrolase	NA	NA	NA	NA	NA
490556:490574	attL	GGCGGTGGTCGACAGCGTG	NA	NA	NA	NA
WP_010929831.1|490787_491747_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|491754_492417_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|492413_493364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|494920_495766_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|495853_497017_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|497435_498407_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|498445_499873_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|499992_500784_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|500902_503356_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|503450_504560_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|504562_505972_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|506377_506512_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|506607_506979_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|506975_507248_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|507296_508988_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|509218_510169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929840.1|510626_511550_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814626.1|511558_511957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929841.1|512198_514169_+	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_010929843.1|515655_516645_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010926403.1|516641_516842_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929845.1|516954_517296_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_019247983.1|517306_518491_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929847.1|518527_519055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929848.1|519112_519760_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929849.1|519756_520743_-	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010926410.1|520746_520929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|520925_521303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929850.1|521536_522004_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010929851.1|522039_522990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926414.1|523088_523331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929852.1|523497_524139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929853.1|524149_525100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
535931:535949	attR	CACGCTGTCGACCACCGCC	NA	NA	NA	NA
>prophage 6
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	691481	747575	4086189	transposase,tRNA	Pseudomonas_phage(10.0%)	48	NA	NA
WP_010929956.1|691481_692432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|693154_694429_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|694515_695598_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|695608_696421_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|696457_696784_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|696788_697349_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|697589_698582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|698600_699596_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|699611_700988_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|700980_703362_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|703378_703768_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|703894_704125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|704229_705180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|705278_706229_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|706225_707098_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|708028_709315_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|709368_710295_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|710313_710769_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|711620_712412_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|712443_713064_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|713060_713690_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|713702_714311_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|714307_715297_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|715402_716617_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|718568_719519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|720952_722239_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|722404_722713_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|722713_723379_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|723419_725210_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|725322_726183_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|726179_727385_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|727381_728266_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|729782_730217_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|730179_731178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|731337_732210_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|732550_732769_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_010929975.1|732808_734188_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|734229_735627_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|735666_737319_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|737322_738207_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|738206_739148_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|739226_740846_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|741012_741828_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|741895_742465_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|742465_743416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|744070_745168_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|745201_746467_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|746624_747575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	809086	863217	4086189	transposase,holin	Ostreococcus_lucimarinus_virus(25.0%)	41	NA	NA
WP_005012067.1|809086_810037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|811200_812916_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|812926_813418_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|813490_814507_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|814674_815454_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|815472_816000_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|816293_816563_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|816653_818813_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|818933_819653_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|819649_820600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|820740_821958_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|821951_822563_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|823196_824174_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|824317_825064_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|825085_825532_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|826319_828551_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|828573_829374_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|829655_830888_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|830998_831988_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|832018_833407_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|835005_835989_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929632.1|836185_837202_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|837398_838223_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|838300_839224_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|839394_840546_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|840549_841581_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|841709_842681_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|842705_844790_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|844856_845849_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|845957_847292_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|847317_849330_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|849326_851375_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|851478_852126_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|852266_852761_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|852804_853476_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|853490_854984_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|854980_858094_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|858106_859213_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|859336_860005_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|860225_861176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|861258_863217_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 8
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	1016796	1087072	4086189	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_010930525.1|1016796_1017813_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1019321_1019894_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1019953_1020685_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1020736_1021654_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1022461_1025641_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930122.1|1025637_1027020_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1027089_1027341_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1027486_1028101_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1028287_1030402_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1030477_1031329_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1031325_1031952_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1031948_1033703_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1033995_1036701_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1036713_1038375_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1038387_1040178_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1040399_1041575_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1041617_1042568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1042666_1043407_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1043601_1045638_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1045655_1046666_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1046783_1047977_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1048006_1048780_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1048776_1049967_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1049992_1050931_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1050927_1053276_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1053430_1054072_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1054175_1055309_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1055401_1055554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1055585_1056134_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1056152_1056638_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1056815_1057754_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1057756_1058074_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1058119_1059064_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1059084_1060560_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1060744_1061395_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1061448_1061784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1061780_1062641_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1062657_1062939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1063012_1063276_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1063519_1064470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1064768_1065506_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1065941_1066265_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1066299_1066860_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1066980_1067856_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1067868_1068816_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1068917_1069211_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1069237_1071295_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1071309_1071810_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1071883_1073590_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1074453_1075506_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1075558_1075948_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1075956_1076589_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930147.1|1076688_1077705_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1078493_1079543_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930149.1|1081180_1082068_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1082208_1082682_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1082671_1083694_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1083690_1085118_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930153.1|1086055_1087072_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	1090824	1152885	4086189	holin,protease,transposase,tRNA	Catovirus(20.0%)	52	NA	NA
WP_005012808.1|1090824_1091775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930155.1|1091873_1093010_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1093006_1094080_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1094237_1095674_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1095764_1096406_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1096741_1097758_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1098090_1100823_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1100889_1102311_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1102574_1103291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1103375_1103693_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1103733_1104147_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1104148_1104508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1104550_1106095_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1106178_1107009_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1107043_1108198_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1108240_1109113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930166.1|1109229_1111518_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1112724_1113189_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1113215_1114166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1114533_1115310_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1115354_1116212_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1116233_1117250_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_010930170.1|1117384_1118425_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	39.9	3.0e-50
WP_010930171.1|1118619_1120701_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1120936_1122430_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1122660_1123455_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1123675_1125034_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1125030_1125873_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1125891_1127778_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1127719_1127971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1128015_1128648_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1128666_1129269_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|1129420_1130371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1130951_1131659_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1132017_1133004_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1133143_1134157_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_010930179.1|1134153_1135104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1135216_1135675_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1135711_1137025_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1137042_1137414_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1137410_1138874_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1139014_1139743_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1139724_1142574_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1142786_1143737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1143904_1144729_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1144728_1145607_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1146511_1147627_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1147655_1148450_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1148446_1150312_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1150390_1151023_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1151019_1151322_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1151364_1152885_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	1174803	1243219	4086189	transposase,tRNA	Erysipelothrix_phage(33.33%)	55	NA	NA
WP_010930198.1|1174803_1175754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1175852_1176476_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1176655_1178938_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1179092_1181789_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1181914_1182403_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930203.1|1182438_1184487_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_003813631.1|1184811_1187682_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1187727_1188942_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1189171_1190599_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1190696_1191788_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1191800_1192559_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1192646_1193549_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1193545_1194496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1194625_1195609_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1195663_1196386_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930208.1|1196853_1197804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930209.1|1198525_1199059_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003813612.1|1199051_1200014_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003813609.1|1200107_1202585_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813607.1|1202701_1203010_+	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_010930210.1|1204654_1204981_+	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1205129_1206080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930211.1|1206089_1207445_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1207525_1209901_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1210065_1212141_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1212202_1213003_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1213104_1214067_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1214054_1214810_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1214917_1216555_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1216622_1217360_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1217462_1218038_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1218210_1218747_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1218749_1219094_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1219109_1219955_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1219993_1221373_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1221450_1222332_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1222430_1223381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1223377_1223788_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1223895_1224750_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1224742_1225705_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1225750_1226875_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1226980_1227859_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1227983_1228763_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1228916_1230338_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1230772_1232470_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1232696_1233638_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1233964_1234711_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1234718_1235645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1235766_1236684_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1236723_1237677_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1237701_1238280_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1239953_1240562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1240639_1240993_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1241076_1242066_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010929591.1|1242268_1243219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	1342355	1410842	4086189	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1342355_1343306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1344074_1344713_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1345602_1346049_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1346130_1346832_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1346832_1347600_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1347596_1348835_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1348834_1349761_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1349863_1350979_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1350994_1351945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1352298_1352880_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1352876_1353710_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1353920_1355234_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1355410_1356292_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1356311_1357163_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1357215_1358304_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1358414_1359542_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1359776_1360388_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1360486_1361437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1361658_1362036_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1362183_1362681_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1362677_1363205_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1363338_1364154_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1364166_1365348_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1365395_1366289_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1366415_1366886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1367011_1367839_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1367867_1368644_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1368640_1368916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1368930_1369395_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1369406_1370108_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1370217_1370718_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1370800_1371979_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1373606_1373942_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1374129_1375578_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1375635_1375980_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1376086_1376626_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1376718_1377669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1377767_1378175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1378407_1378839_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1379020_1379425_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1380661_1380985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926674.1|1380987_1381875_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1381907_1382333_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1382404_1382758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1382997_1383504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1383542_1384874_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1384933_1385749_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1385745_1386600_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1389662_1392206_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1393572_1395327_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1395323_1397444_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1397448_1399644_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1399640_1402982_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1405784_1406735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1406800_1406980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1407096_1407852_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1407838_1408984_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1409891_1410842_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	1614634	1682720	4086189	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1614634_1615123_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_010930417.1|1615240_1615819_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1615924_1616293_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1616391_1617342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1617348_1618461_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1619147_1620350_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1620385_1620532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1620553_1623214_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1623226_1626631_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1627298_1629524_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1629570_1629897_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1629947_1630556_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1630654_1631605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1631674_1632439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1632435_1633035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1633138_1633990_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1634049_1634676_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634672_1635623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1635721_1636834_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1636823_1637825_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1637930_1639442_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1639438_1640743_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1640854_1641415_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1641682_1642237_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1642692_1642908_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1643162_1645760_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1645756_1646944_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1647601_1648216_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1648304_1649432_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_003809954.1|1649443_1650349_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1651241_1652192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1652373_1653126_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1653194_1653854_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1653850_1654579_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1654591_1656871_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1656895_1657099_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1657140_1657773_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1657908_1658826_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1658822_1659536_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1659773_1660544_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1660548_1661148_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1661392_1662883_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1662941_1663226_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1663363_1663519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1663791_1664718_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1664854_1665595_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1665761_1667138_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1667319_1668225_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1669876_1671679_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1671805_1672447_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1672546_1673497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1673518_1674739_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1674924_1676337_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1676400_1677468_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1677467_1678955_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1678964_1679909_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1680068_1680767_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1680844_1681750_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1681769_1682720_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	1718675	1774266	4086189	transposase	Tetraselmis_virus(25.0%)	47	NA	NA
WP_005012067.1|1718675_1719626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|1720178_1721804_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|1721853_1722888_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|1722890_1724237_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|1724233_1725748_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_164930519.1|1725738_1727226_-	DUF4381 family protein	NA	NA	NA	NA	NA
WP_010930479.1|1727222_1728164_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|1728172_1729141_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|1730680_1731649_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|1731826_1732816_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|1732862_1733621_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|1733810_1734548_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|1734646_1735597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|1735781_1736564_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|1736557_1737259_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|1737498_1738101_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1739427_1740378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930485.1|1740374_1741931_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|1741923_1742697_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|1742755_1743706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1743810_1744758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1744811_1746626_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1746618_1747293_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_041166323.1|1747422_1750497_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930491.1|1750510_1750810_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1751124_1751748_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1751991_1752861_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1752838_1753783_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1753868_1754795_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1754907_1755687_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1755677_1756874_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1756904_1757855_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1758076_1758766_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1758830_1759586_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1759637_1760630_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1760639_1761593_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1761708_1762671_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1764072_1764501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1764497_1765448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1765741_1766479_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1766902_1768090_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1768093_1768474_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1770193_1771165_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1771178_1771892_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1771896_1772814_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1772920_1773217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1773315_1774266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	1781562	1844528	4086189	transposase,tRNA	Klosneuvirus(12.5%)	55	NA	NA
WP_005013747.1|1781562_1782513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1782556_1783099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1783196_1784045_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1784037_1784544_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1784540_1785542_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1785554_1786349_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1786397_1788299_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1788295_1788919_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1789045_1790170_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1790550_1792155_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1792310_1793087_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1793171_1794170_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1794166_1794940_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930522.1|1795924_1796875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1796912_1797500_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1797517_1797901_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1799260_1800553_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1800687_1801728_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010930525.1|1801825_1802842_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1803109_1803757_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1803882_1804641_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1804625_1805405_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1805422_1806307_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1806303_1807083_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1807187_1807787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1808075_1808828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1808946_1810347_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1810370_1810769_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1810944_1811145_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1811283_1812012_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1812145_1813561_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1813564_1814428_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1814440_1815190_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1815372_1817388_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1817369_1818038_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1818812_1819763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1819911_1820250_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1820307_1820469_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1820500_1820701_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1820966_1823540_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1823610_1826160_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1828710_1829199_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1829290_1830442_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1830495_1831317_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1831355_1832585_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1832713_1833154_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1833264_1834215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1834211_1834685_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1834846_1835785_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1835786_1836995_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1837099_1837606_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1837608_1840470_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1840459_1841425_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1841484_1843479_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1843577_1844528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	2209231	2261422	4086189	transposase	Erysipelothrix_phage(33.33%)	45	NA	NA
WP_010930730.1|2209231_2210182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2211052_2211925_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2212002_2213142_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2213500_2214757_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2214762_2215290_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2215294_2216113_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2216112_2216835_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2216856_2217171_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2217188_2218337_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2218367_2219243_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2219239_2220559_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930738.1|2220631_2221828_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2221838_2223326_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2225920_2226820_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2226957_2227923_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2228021_2228972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|2229193_2230144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2230140_2230443_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2230602_2231007_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2230999_2232226_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2232222_2232669_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2232738_2233521_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2233562_2235068_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2235353_2236187_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2237624_2238446_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2238464_2239319_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2239322_2240294_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2240978_2241155_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812172.1|2242679_2242976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930747.1|2243150_2244503_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	8.5e-45
WP_010930153.1|2244645_2245662_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2247641_2248655_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2248741_2249647_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2249803_2250148_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2250305_2250764_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2250777_2252994_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2252990_2254052_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2254080_2255055_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2255006_2255825_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2255837_2256446_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2256620_2257016_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2257034_2258474_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2258502_2258850_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2258868_2259819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2260471_2261422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	2287981	2338735	4086189	protease,transposase,tRNA	Staphylococcus_phage(11.11%)	46	NA	NA
WP_005012067.1|2287981_2288932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2289098_2290073_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2290069_2290213_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2291834_2292497_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2292499_2292676_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2292672_2293611_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2293702_2295193_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2295278_2295431_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2295444_2295684_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2295779_2296523_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2296555_2297056_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2297118_2298078_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2298074_2298836_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2298851_2299937_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2300136_2301087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2301046_2301460_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2301744_2302044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2302453_2304736_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2305201_2305396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2305421_2307452_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2307471_2307684_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2307961_2308501_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2308614_2309910_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2309986_2311144_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2311327_2312227_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2312245_2313550_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2313515_2314622_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2314709_2314946_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2315084_2316155_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2316158_2317514_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2317540_2318701_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2318703_2319342_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2319343_2320630_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2320688_2321984_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2321990_2322497_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2322493_2323642_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2323669_2324095_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2324417_2327300_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2327392_2328148_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2328913_2330263_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2330361_2331312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2334052_2335342_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2335460_2335898_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2335941_2337150_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2337296_2337761_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930800.1|2337784_2338735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	2719918	2760587	4086189	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2719918_2720869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2720979_2721162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2721261_2721858_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2722041_2723133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2723632_2724043_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2724101_2724443_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2724448_2726866_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2726878_2727901_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2727975_2728335_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2728350_2728548_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2728883_2729834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2730028_2730478_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2730474_2731425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2731535_2732984_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2733098_2733380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2733483_2734434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2734678_2735392_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2735514_2735742_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2736036_2736675_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2736783_2737818_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2737814_2738765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2739180_2739705_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2739708_2739978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2740176_2741238_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2741321_2742956_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2742957_2743761_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2743789_2744749_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2744752_2746267_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2746303_2747308_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2747739_2748210_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2748245_2748857_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2748887_2749511_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2749591_2751124_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2751158_2752400_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2752443_2753475_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2753471_2754641_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2754634_2755315_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2755476_2756319_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2756481_2757453_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2757624_2758503_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2758525_2759596_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2759636_2760587_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	2815003	2887873	4086189	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2815003_2815420_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2815530_2816163_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2816191_2816635_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2816656_2817748_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2817802_2818603_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2818738_2819359_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2819498_2819972_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2821111_2822062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2822058_2829720_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2829960_2834007_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2834319_2834901_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2834897_2836196_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2836275_2837304_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2837564_2838515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2838511_2839462_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2839778_2840384_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2840437_2841751_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2841825_2842296_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2842295_2843084_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2843094_2844747_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2844834_2845785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2846946_2847453_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2847449_2848214_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2848229_2848514_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2848578_2849568_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2849739_2850669_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2850640_2851327_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2851360_2851906_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2851950_2853216_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2853212_2854115_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2855296_2856241_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2856335_2857853_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2857894_2859523_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2859630_2860512_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2863624_2863999_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2864023_2864362_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2864405_2866040_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2866078_2867425_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2867532_2868954_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2869023_2869608_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2869710_2870661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2870795_2871902_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2871912_2873010_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2873154_2874360_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2874366_2874888_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2874884_2875376_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2875372_2875624_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2875604_2876090_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2876225_2879687_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2879704_2880589_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2880598_2881030_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931093.1|2881276_2881780_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2881857_2883258_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2883332_2884208_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2884204_2885212_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2885679_2885985_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2886075_2886666_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2886856_2887873_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	2891016	2956778	4086189	protease,transposase	uncultured_Mediterranean_phage(28.57%)	48	NA	NA
WP_010929956.1|2891016_2891967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2891963_2892758_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2892789_2893494_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2893568_2894369_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2894365_2894773_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2894769_2895411_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2895403_2897404_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2898664_2899996_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2899992_2900943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2902649_2902916_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2903623_2903962_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2908515_2909118_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2909214_2910504_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2910561_2911293_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2911289_2912093_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2912089_2913178_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2913174_2914104_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2914252_2915398_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2915419_2916370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2916700_2920522_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2920678_2921347_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931112.1|2921351_2923025_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2923043_2924363_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2924367_2926683_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2926738_2928907_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2928903_2934093_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2934182_2934497_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2934724_2934970_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2935064_2935583_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2935682_2936888_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2937003_2938401_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2938517_2939096_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2939168_2940560_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931121.1|2940727_2941678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2941958_2942579_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2942575_2942989_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2942985_2944029_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2944084_2944273_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2944282_2945047_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2945137_2945794_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2945885_2946644_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2946669_2948271_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2948471_2949476_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2949576_2949840_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2949957_2950734_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2951324_2952275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2954658_2955771_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2955827_2956778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	2987164	3029806	4086189	transposase	Planktothrix_phage(33.33%)	38	NA	NA
WP_005012067.1|2987164_2988115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2988235_2989132_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2991409_2993635_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2993799_2994888_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2994844_2995498_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2995545_2996343_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2996874_2997825_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931145.1|2997899_2999054_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|2999110_3000061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3000159_3000465_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3000493_3000928_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3000929_3002174_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3002170_3002881_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3002895_3003807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|3004169_3004574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3004570_3005029_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|3005035_3005944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|3005940_3006807_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3006793_3007621_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3007631_3008759_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3009836_3011075_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3011116_3012379_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3012385_3013138_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3013189_3013375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3013650_3014115_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3014146_3014806_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3014950_3017059_+	AsmA family protein	NA	NA	NA	NA	NA
WP_010931155.1|3017060_3017681_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|3017772_3018525_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3019659_3020784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3020829_3021198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3021439_3022390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3023425_3023968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3024353_3025304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3025300_3026266_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3026335_3027172_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3027684_3028794_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3028855_3029806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	3196549	3269536	4086189	holin,transposase,tRNA	Xanthomonas_phage(14.29%)	59	NA	NA
WP_010929591.1|3196549_3197500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3197508_3198057_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3198053_3198662_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3198844_3199315_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3199321_3200581_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3200633_3201446_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3201560_3202115_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_023998380.1|3202124_3203114_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3203293_3204013_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3204029_3206765_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3206944_3207931_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3208059_3208467_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3208578_3209502_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3209730_3210915_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3211103_3212330_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3212334_3213156_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3213168_3214119_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3214115_3215522_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3215518_3216592_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3216588_3217782_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3217778_3219311_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3219307_3220477_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3220466_3223304_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3223300_3225031_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3225027_3225306_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3225305_3226400_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3226408_3226837_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3227639_3229448_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3229487_3230567_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3230563_3231757_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3231906_3232185_+	SWIB/MDM2 domain-containing protein	NA	NA	NA	NA	NA
WP_003814593.1|3232513_3232906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3239630_3240107_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3240259_3241372_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3241439_3242000_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3242023_3242356_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3242339_3244028_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3244147_3244936_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3245643_3246594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3247038_3247350_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3247349_3247880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3248042_3248993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3249282_3249747_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3249761_3251267_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3251523_3253128_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3253183_3254089_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3254529_3255480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|3255618_3256371_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|3256609_3258334_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|3258353_3259613_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|3259627_3260722_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|3260718_3262845_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|3262857_3263538_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|3263815_3265189_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|3265190_3266210_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|3266273_3267245_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3267309_3268260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|3268358_3269201_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|3269200_3269536_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 22
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	3287959	3328570	4086189	protease,integrase,transposase,tRNA	Erwinia_phage(25.0%)	33	3311417:3311435	3331305:3331323
WP_010931291.1|3287959_3288499_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|3288520_3289855_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|3289868_3290174_-	copper-binding protein	NA	NA	NA	NA	NA
WP_003807159.1|3290598_3291159_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3291257_3292208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443900.1|3292520_3293999_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3294005_3295115_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3295126_3295807_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3295828_3296584_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3296719_3297604_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3297691_3298273_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3298533_3298833_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3298984_3299464_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3300183_3301620_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3301616_3302120_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3302135_3303086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3303613_3304387_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3304519_3305530_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3305681_3307337_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3307391_3307733_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3307746_3309186_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3309318_3310134_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3310327_3311278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3311417:3311435	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274087.1|3314143_3314638_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3314654_3315605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931301.1|3315788_3317000_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3317015_3319967_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931303.1|3319968_3323088_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3323235_3324282_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3324623_3325751_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3326030_3327122_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3327194_3327977_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3327973_3328570_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3331305:3331323	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 23
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	3377508	3497784	4086189	transposase,tRNA	Acinetobacter_phage(20.0%)	101	NA	NA
WP_010929956.1|3377508_3378459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378863_3379508_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379532_3380117_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380217_3380835_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380837_3382553_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382549_3382858_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3382874_3383492_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383536_3383839_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383939_3384794_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384981_3385206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385375_3385648_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386065_3386473_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386842_3387637_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387737_3388973_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389041_3390058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390069_3391446_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391442_3392639_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3392635_3394174_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394170_3395430_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_010929591.1|3397370_3398321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3398419_3399370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3400136_3401231_-	CoA transferase	NA	NA	NA	NA	NA
WP_010931345.1|3401223_3402558_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3402511_3403195_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3403220_3404384_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3404380_3405382_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3405381_3406254_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3406250_3407000_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406996_3407788_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407784_3408924_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3409199_3409985_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931350.1|3410018_3410801_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410804_3411194_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3412333_3413197_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3413232_3414321_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3414317_3415268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3415621_3418600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3419526_3420405_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3422353_3423304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3423300_3423768_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423810_3424581_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3424601_3425402_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3425412_3426822_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426916_3427702_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3427941_3428958_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3429065_3429458_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3429595_3430276_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3430280_3431252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931359.1|3431347_3432298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3433802_3434504_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3434503_3435928_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3435944_3437000_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3436996_3438337_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3438452_3440216_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3440327_3441206_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3441318_3442134_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3442137_3442389_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3442473_3443490_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443820_3444042_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3446402_3447320_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447817_3449026_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3449105_3450677_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450794_3451730_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451918_3452863_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3453430_3459148_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3459153_3460281_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3460336_3460963_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010929632.1|3461234_3462251_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3462381_3463092_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3463088_3464078_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3464173_3465805_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465807_3466545_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466700_3467573_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3467841_3469062_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3469058_3469718_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469789_3470422_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3470451_3470970_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470980_3472090_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3472136_3472991_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472992_3473895_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3475117_3476068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3477821_3478811_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3478807_3478966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3478986_3479775_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479771_3480803_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480821_3481385_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3481440_3482961_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3483224_3483929_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3483936_3484674_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484779_3485154_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3485196_3486486_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3486482_3487652_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3487648_3488488_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3488547_3489483_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3489495_3490446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3490544_3491507_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3491538_3491898_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3492022_3492925_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492926_3494699_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494733_3495510_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3496833_3497784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	3512722	3571458	4086189	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_005012808.1|3512722_3513673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513801_3514935_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514978_3515884_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515886_3517587_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3517583_3518504_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3518511_3519489_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3519547_3520582_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3522556_3522793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3522919_3523783_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523871_3524693_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524772_3525510_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3525506_3526499_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3526612_3527275_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3527319_3528468_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3530791_3531742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931401.1|3532082_3533033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3533131_3534082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3534378_3534876_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534918_3536694_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536701_3537568_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3537574_3538309_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3539478_3540273_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3540562_3541153_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3541186_3542515_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3542589_3543735_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3543846_3544797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3545528_3545906_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3545890_3546592_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3546735_3547428_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3547427_3548531_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3548640_3551013_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3551009_3552569_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3552593_3553391_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3553422_3554568_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3554672_3556115_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3556117_3557347_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3559484_3560435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3561564_3562122_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3562097_3562448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3562616_3563411_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3563407_3564457_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3564456_3565146_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3565232_3565730_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3565761_3567078_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3567094_3568069_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3568105_3568564_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3568563_3569244_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3569246_3569675_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3569727_3571458_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 25
NC_002929	Bordetella pertussis Tohama I, complete genome	4086189	3577624	3623678	4086189	transposase,terminase,tRNA,tail,protease	uncultured_Caudovirales_phage(21.05%)	49	NA	NA
WP_010931429.1|3577624_3581581_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3581573_3581963_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3581959_3582493_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3582560_3582920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3582929_3585542_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3585567_3585858_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3585875_3586205_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3586214_3586733_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3586987_3587488_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3587495_3587918_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3587914_3588313_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3588309_3588705_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3588704_3588905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3588906_3589389_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3589451_3589703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931443.1|3591756_3592359_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3592481_3592724_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3592729_3593785_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3593813_3595232_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3595234_3596512_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3596498_3596984_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3597623_3598574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3598830_3599520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3599512_3599764_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3600318_3600930_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3601001_3601208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3601459_3602410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|3602508_3603309_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|3603370_3603754_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|3603765_3605199_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|3605405_3605735_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|3605737_3606487_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|3606669_3607590_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|3607636_3607849_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|3607871_3608294_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|3608310_3609411_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|3609507_3611025_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|3611100_3611940_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|3611961_3612843_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|3612924_3614019_-	porin	NA	NA	NA	NA	NA
WP_010929851.1|3614312_3615263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3615337_3616279_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3616377_3617328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|3617411_3617771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|3618152_3619190_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|3619506_3620847_+	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931463.1|3620856_3621309_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|3621405_3622587_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|3622652_3623678_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
