The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	20326	66668	3039042	bacteriocin,transposase,protease,holin	Planktothrix_phage(25.0%)	46	NA	NA
WP_003568480.1|20326_21184_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003568482.1|21263_21446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490759.1|21496_21676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003572828.1|22173_23409_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_012490760.1|23612_26186_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003568488.1|26198_26900_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	3.9e-33
WP_012490761.1|27179_27731_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003584074.1|27774_28581_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003584076.1|28585_28906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566351.1|29131_29812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012490762.1|29744_30248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490763.1|30267_32418_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_012490764.1|32486_33374_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_014951491.1|33555_34161_+	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_003568507.1|34284_35178_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_012490766.1|35226_35865_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003568512.1|36093_37470_+	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_012490767.1|37692_38037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003562540.1|38112_38472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490768.1|38712_40155_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_003577239.1|40349_40985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003577240.1|41034_41346_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003577242.1|41514_41703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003577243.1|41834_42446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003659032.1|42803_43277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003568611.1|43428_43767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012490769.1|44100_44811_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003592450.1|44797_45127_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_012490770.1|46007_46223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490771.1|46569_47445_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_012490772.1|47790_48441_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_012490773.1|48609_50025_-|transposase	IS5-like element ISLca2 family transposase	transposase	NA	NA	NA	NA
WP_003562575.1|50406_51099_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003562576.1|51797_52118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012490774.1|52306_53182_-	Rgg/GadR/MutR family transcriptional regulator	NA	A0A1X9I6E0	Streptococcus_phage	26.6	1.0e-11
WP_012490775.1|53274_54867_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.5	1.1e-11
WP_012490776.1|55204_56578_-	MFS transporter	NA	NA	NA	NA	NA
WP_011673959.1|56755_57079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490777.1|57259_60571_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_003572929.1|60567_61170_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003572931.1|61420_61681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003562592.1|61893_62556_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003562594.1|62555_63485_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003568628.1|63496_64126_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012490780.1|64128_65382_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	43.0	1.5e-14
WP_003577283.1|66014_66668_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 2
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	337615	398299	3039042	transposase,protease	Staphylococcus_phage(50.0%)	57	NA	NA
WP_014566389.1|337615_338305_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_024109404.1|338368_339055_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_012490911.1|339137_339527_-	YxeA family protein	NA	NA	NA	NA	NA
WP_003577580.1|339558_340083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566391.1|340072_340342_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_012490773.1|340449_341865_+|transposase	IS5-like element ISLca2 family transposase	transposase	NA	NA	NA	NA
WP_016363600.1|342290_343016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003577587.1|343015_343696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490915.1|343685_344474_-	membrane protein	NA	NA	NA	NA	NA
WP_012490917.1|344924_346451_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	31.3	7.4e-53
WP_012490918.1|346721_347843_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012490919.1|347835_348804_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003573439.1|348804_349116_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012490920.1|349257_350544_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_003604285.1|350560_350983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003563251.1|351004_351865_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_012490921.1|351977_352619_+	zeta toxin family protein	NA	NA	NA	NA	NA
WP_003563255.1|352905_353736_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003563257.1|353728_354598_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_012490922.1|354637_355633_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_003563261.1|356187_356967_+	alpha/beta hydrolase	NA	A0A291AV30	Mycobacterium_phage	25.4	1.0e-05
WP_012490923.1|358220_358955_+	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA	NA
WP_003601683.1|358861_359860_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
WP_012490924.1|359918_360800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003563273.1|363752_364151_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003563277.1|364263_364635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003563280.1|366647_367490_+	serine hydrolase	NA	NA	NA	NA	NA
WP_016364816.1|367586_368066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490929.1|368065_368296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003586699.1|368379_369363_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003586701.1|369721_370546_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_012490930.1|370532_371270_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_003601683.1|372267_373266_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
WP_012490933.1|373989_374844_+	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	29.2	8.4e-14
WP_012490934.1|374846_375626_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_014566730.1|375638_376763_+	SPASM domain-containing protein	NA	NA	NA	NA	NA
WP_003604304.1|377110_378046_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_012490936.1|378057_379464_+	C4-dicarboxylate transporter DcuC	NA	NA	NA	NA	NA
WP_012490937.1|379479_379977_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012490938.1|380019_380760_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012490939.1|380904_381702_-	protein SipE	NA	NA	NA	NA	NA
WP_003586715.1|381712_382555_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_012490940.1|382558_383326_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_003586720.1|383351_383861_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_003586723.1|383888_384296_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_012490941.1|384590_387329_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_014951596.1|387370_388666_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_012490943.1|389075_390533_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_012490944.1|390534_391005_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_012490945.1|391006_391948_+	ketose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_012490946.1|391977_392451_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003586737.1|392447_392765_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
WP_014566402.1|392780_393866_+	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
WP_012490948.1|393888_394863_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_012490949.1|394869_395556_+	D-lyxose/D-mannose family sugar isomerase	NA	NA	NA	NA	NA
WP_012490950.1|395674_397141_+	xylulokinase	NA	NA	NA	NA	NA
WP_012490951.1|397300_398299_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.4	2.5e-49
>prophage 3
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	555455	641777	3039042	integrase,transposase	Lactobacillus_phage(61.29%)	100	555976:555991	587301:587316
WP_003577893.1|555455_556385_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	63.7	5.9e-106
555976:555991	attL	TCGTTGCTGGCGTCGG	NA	NA	NA	NA
WP_012491046.1|556578_557124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003569067.1|557444_558614_-|integrase	site-specific integrase	integrase	Q6J1W6	Lactobacillus_phage	98.2	6.6e-219
WP_003573997.1|558726_558987_-	hypothetical protein	NA	B4XYT0	Lactobacillus_phage	40.7	2.5e-09
WP_003589914.1|559076_559697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491047.1|559680_559917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003589919.1|560109_560817_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_003572182.1|560975_561398_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0P0IJN5	Lactobacillus_phage	39.1	7.8e-21
WP_003572184.1|561390_561744_-	helix-turn-helix transcriptional regulator	NA	A0A141E1M3	Streptococcus_phage	40.9	7.7e-14
WP_003574003.1|561987_562236_+	hypothetical protein	NA	A0A0P0ID24	Lactobacillus_phage	97.5	2.7e-37
WP_003572187.1|562277_562478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572188.1|562448_563282_-	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	37.8	2.8e-46
WP_010493122.1|563342_564101_+	ORF6C domain-containing protein	NA	A0A1B0YEA7	Lactobacillus_phage	49.4	1.9e-41
WP_003572193.1|564101_564281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572196.1|564273_564525_-	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
WP_003572199.1|564590_564947_+	DUF771 domain-containing protein	NA	U5U4L9	Lactobacillus_phage	98.3	2.0e-62
WP_003572201.1|565031_565235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003586921.1|565217_565763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010493132.1|565943_566258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003589923.1|566250_566997_+	DnaD domain protein	NA	A0A0N7IRA7	Lactobacillus_phage	56.1	5.8e-35
WP_012491048.1|567011_567836_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	74.7	9.6e-116
WP_003574016.1|567835_568354_+	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003564822.1|568400_568823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572217.1|568824_569562_+	hypothetical protein	NA	A0A097BY87	Enterococcus_phage	43.0	1.3e-47
WP_010493149.1|569573_569861_+	hypothetical protein	NA	Q8LTA8	Lactobacillus_phage	76.8	1.6e-38
WP_010493151.1|569930_570263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010493154.1|570777_571221_+	autolysin regulatory protein arpU	NA	A0A0P0IZI6	Lactobacillus_phage	97.3	1.2e-77
WP_003572221.1|571734_572388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491050.1|572638_573637_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	3.9e-55
WP_003573729.1|573832_574051_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010493173.1|575583_575919_+	ribonucleoside-diphosphate reductase	NA	A0A0N7IRA2	Lactobacillus_phage	90.6	6.8e-52
WP_076626284.1|576038_576371_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003582147.1|576400_577129_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	40.1	7.6e-32
WP_014951815.1|577062_578004_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	28.2	3.1e-17
WP_016364094.1|578049_578913_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.5	3.1e-24
WP_010493185.1|579642_579921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572355.1|579932_580199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572358.1|580217_580394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572360.1|580395_580623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010493190.1|580665_581907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010493192.1|581884_583435_+	DUF5011 domain-containing protein	NA	NA	NA	NA	NA
WP_012491056.1|583444_583864_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_012491057.1|583872_584451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491058.1|584477_586937_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_012491059.1|586933_588991_+	hypothetical protein	NA	NA	NA	NA	NA
587301:587316	attR	TCGTTGCTGGCGTCGG	NA	NA	NA	NA
WP_003582234.1|588996_589332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566422.1|589315_589912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491061.1|589892_591821_+	type IV secretory pathway, VirB4 protein	NA	NA	NA	NA	NA
WP_012491062.1|591822_592833_+	C40 family peptidase	NA	A0A1X9SGZ2	Bradyrhizobium_phage	37.9	1.2e-14
WP_012491063.1|592848_593493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491064.1|593489_593897_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_014566423.1|593886_594708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491066.1|595302_595503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491067.1|595499_595757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491068.1|595795_596230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491069.1|596222_597467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016379926.1|597508_597754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566424.1|597740_600287_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_012491073.1|600888_601278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003660106.1|601280_601424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491077.1|602179_602626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491078.1|603128_604010_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_012491079.1|604026_604386_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_012491080.1|604464_605136_+	class A sortase	NA	NA	NA	NA	NA
WP_012491081.1|605270_605501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041168760.1|605921_607478_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_100216635.1|608162_608950_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_003586210.1|608904_609282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491083.1|609317_609590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491084.1|609649_612454_-	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.6	1.5e-72
WP_012491085.1|612995_613679_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.3	3.1e-59
WP_005688360.1|614153_615308_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_123796556.1|615316_616104_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_014566427.1|616058_616436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491083.1|616471_616744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491084.1|616803_619608_-	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.6	1.5e-72
WP_012491088.1|620149_620770_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	52.9	4.9e-56
WP_012491089.1|620957_621887_-	class I mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_012491090.1|621900_622731_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_012491091.1|622743_623598_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_012491092.1|623626_624121_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012491093.1|624164_624584_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_012491094.1|624760_625483_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_012491095.1|625580_626318_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012491096.1|626622_626943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491097.1|627039_627627_+	recombinase family protein	NA	M4QQC6	Vibrio_phage	42.3	1.0e-18
WP_003591692.1|627794_629123_+	MFS transporter	NA	NA	NA	NA	NA
WP_003567312.1|629323_629881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123796556.1|630402_631190_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_123031263.1|631641_632385_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.4	1.5e-136
WP_012491102.1|632657_632789_-|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	90.7	2.3e-16
WP_003593245.1|633045_633963_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_003593246.1|634109_634718_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	52.8	1.8e-50
WP_010010565.1|634728_635997_+	NADPH-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	47.7	1.8e-49
WP_012491102.1|636270_636402_+|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	90.7	2.3e-16
WP_123031263.1|636674_637418_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.4	1.5e-136
WP_012491103.1|637622_639302_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_012491105.1|639648_639846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003585300.1|639820_640174_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_012491106.1|640274_641777_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	896566	964672	3039042	capsid,transposase,holin,terminase,protease,tail,integrase,tRNA,head,portal	Lactobacillus_phage(94.23%)	73	923213:923229	969737:969753
WP_011674296.1|896566_898069_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_003564071.1|898363_898912_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_014566463.1|899291_901010_+	APC family permease	NA	NA	NA	NA	NA
WP_003569394.1|901296_902505_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003564079.1|902507_903536_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003564081.1|903548_904562_+	flippase-like domain-containing protein	NA	NA	NA	NA	NA
WP_003564083.1|904597_904951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566464.1|905036_906212_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003564087.1|906457_906736_+	YkuJ family protein	NA	NA	NA	NA	NA
WP_012491223.1|906966_909060_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	46.9	6.1e-151
WP_003564091.1|909252_909693_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_003569415.1|915752_916400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003564111.1|916580_917765_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	66.0	1.5e-141
WP_003564114.1|917878_919372_+	MFS transporter	NA	NA	NA	NA	NA
WP_012491224.1|919466_919937_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003569431.1|920180_921659_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003598039.1|921655_922381_+	DUF4811 domain-containing protein	NA	NA	NA	NA	NA
WP_003578172.1|922481_923165_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
923213:923229	attL	AAGGATCTTGGTCGCAA	NA	NA	NA	NA
WP_003578174.1|923743_926155_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	68.4	0.0e+00
WP_003564130.1|926420_928064_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_012491225.1|928068_928779_+	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA	NA
WP_003569458.1|928921_929137_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_003569460.1|929253_930075_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_012491226.1|930071_930575_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_012491227.1|930898_932038_-|integrase	site-specific integrase	integrase	A0A0P0IXL3	Lactobacillus_phage	100.0	2.4e-218
WP_003598052.1|932155_933223_-	Abi family protein	NA	A0A0N7IRA5	Lactobacillus_phage	100.0	1.1e-207
WP_003598055.1|933367_933799_-	hypothetical protein	NA	A0A0P0IJV8	Lactobacillus_phage	100.0	6.8e-73
WP_012491228.1|933868_934351_-	hypothetical protein	NA	A0A0P0IZP3	Lactobacillus_phage	100.0	2.1e-83
WP_003598059.1|934354_934648_-	hypothetical protein	NA	A0A0P0HRW5	Lactobacillus_phage	100.0	5.7e-47
WP_012491229.1|934831_935692_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0P0IV64	Lactobacillus_phage	100.0	2.8e-158
WP_012491230.1|935678_936047_-	helix-turn-helix domain-containing protein	NA	A0A0P0I3L3	Lactobacillus_phage	100.0	2.8e-59
WP_003578190.1|936302_936500_+	hypothetical protein	NA	A0A0P0IK60	Lactobacillus_phage	100.0	5.2e-28
WP_012491231.1|936496_937219_+	Rha family transcriptional regulator	NA	A0A0P0IDD0	Lactobacillus_phage	100.0	1.4e-126
WP_014951753.1|937226_937439_+	hypothetical protein	NA	A0A0N7IRA6	Lactobacillus_phage	100.0	7.8e-30
WP_003657835.1|937547_937772_+	DUF771 domain-containing protein	NA	A0A0P0IQT9	Lactobacillus_phage	100.0	2.6e-39
WP_012491233.1|937860_938073_+	hypothetical protein	NA	A0A0P0IXL9	Lactobacillus_phage	100.0	2.5e-36
WP_012491234.1|938082_938958_+	YqaJ viral recombinase family protein	NA	A0A0P0IJW5	Lactobacillus_phage	100.0	1.1e-170
WP_012491235.1|938960_939155_+	hypothetical protein	NA	A0A0P0IZQ2	Lactobacillus_phage	100.0	2.5e-30
WP_012491236.1|939154_940042_+	recombinase RecT	NA	A0A0P0HRX2	Lactobacillus_phage	100.0	8.6e-163
WP_012491237.1|940050_940296_+	helix-turn-helix transcriptional regulator	NA	A0A0P0IV68	Lactobacillus_phage	100.0	2.6e-37
WP_012491238.1|940300_941146_+	DnaD domain protein	NA	A0A0N7IRA7	Lactobacillus_phage	100.0	1.0e-133
WP_012491239.1|941183_942005_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	100.0	6.1e-155
WP_012491240.1|942001_942301_+	hypothetical protein	NA	A0A0P0IK66	Lactobacillus_phage	100.0	2.1e-49
WP_014566466.1|942263_942548_+	hypothetical protein	NA	A0A0P0IDD7	Lactobacillus_phage	100.0	8.8e-45
WP_014566751.1|942516_942864_+	hypothetical protein	NA	A0A0P0IQU7	Lactobacillus_phage	100.0	1.5e-62
WP_012491243.1|942856_943435_+	HNH endonuclease	NA	A0A0P0I7T6	Lactobacillus_phage	100.0	1.1e-105
WP_012491244.1|943448_943871_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0IXM5	Lactobacillus_phage	100.0	5.5e-75
WP_012491245.1|943875_944139_+	hypothetical protein	NA	A0A0P0IJX1	Lactobacillus_phage	100.0	6.1e-40
WP_012491246.1|944162_944486_+	hypothetical protein	NA	A0A0N7IRA8	Lactobacillus_phage	100.0	9.7e-56
WP_012491247.1|944564_945014_+	hypothetical protein	NA	A0A0P0IZR0	Lactobacillus_phage	100.0	1.2e-80
WP_012491248.1|945238_945619_+	HNH endonuclease	NA	A0A0P0HRY0	Lactobacillus_phage	100.0	2.5e-71
WP_003582259.1|945688_946063_+	hypothetical protein	NA	A0A1B0YE76	Lactobacillus_phage	100.0	3.6e-62
WP_014566467.1|946065_947796_+|terminase	terminase large subunit	terminase	A0A0P0IJU3	Lactobacillus_phage	99.8	0.0e+00
WP_012491251.1|947814_949050_+|portal	phage portal protein	portal	A0A0P0IZM3	Lactobacillus_phage	100.0	2.6e-234
WP_012491252.1|949027_949735_+|protease	Clp protease ClpP	protease	A0A0P0HRU7	Lactobacillus_phage	100.0	7.2e-128
WP_014566468.1|949739_950969_+|capsid	phage major capsid protein	capsid	A0A0P0IV50	Lactobacillus_phage	99.8	2.1e-228
WP_012491254.1|951042_951291_+	hypothetical protein	NA	A0A0P0I3K0	Lactobacillus_phage	100.0	9.1e-38
WP_003582271.1|951304_951631_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1B0Y2R7	Lactobacillus_phage	100.0	7.0e-54
WP_012491255.1|951569_951908_+|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	100.0	2.2e-58
WP_012491256.1|951891_952221_+	hypothetical protein	NA	A0A0P0IDB8	Lactobacillus_phage	100.0	3.1e-57
WP_012491257.1|952210_952594_+	hypothetical protein	NA	A0A0P0IQS9	Lactobacillus_phage	100.0	4.5e-68
WP_012491258.1|952605_953253_+	hypothetical protein	NA	A0A0P0I7R6	Lactobacillus_phage	100.0	1.5e-119
WP_003595114.1|953329_953695_+	hypothetical protein	NA	A0A1B0Y865	Lactobacillus_phage	100.0	4.6e-62
WP_003582283.1|953775_953937_+	hypothetical protein	NA	A0A0P0IJV2	Lactobacillus_phage	100.0	7.5e-25
WP_012491260.1|953956_956929_+	tape measure protein	NA	A0A0P0IZN3	Lactobacillus_phage	100.0	1.3e-292
WP_012491261.1|956935_957631_+	hypothetical protein	NA	A0A0P0HRV6	Lactobacillus_phage	100.0	8.3e-129
WP_014566469.1|957627_962034_+|tail	phage tail protein	tail	A0A0N7IRA4	Lactobacillus_phage	100.0	0.0e+00
WP_012491263.1|962062_962488_+	DUF1617 family protein	NA	A0A1B0Y2S1	Lactobacillus_phage	100.0	8.8e-73
WP_012491264.1|962490_962760_+	hypothetical protein	NA	A0A0P0I3K6	Lactobacillus_phage	100.0	2.4e-39
WP_012491265.1|962805_963099_+	hypothetical protein	NA	A0A0P0IK41	Lactobacillus_phage	100.0	4.0e-48
WP_012491266.1|963088_963523_+|holin	phage holin	holin	A0A0P0IDC6	Lactobacillus_phage	100.0	7.4e-51
WP_012491267.1|963522_963711_+	hypothetical protein	NA	A0A0P0IQT6	Lactobacillus_phage	100.0	6.7e-25
WP_012491268.1|963697_964672_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0P0I7S1	Lactobacillus_phage	100.0	9.1e-198
969737:969753	attR	AAGGATCTTGGTCGCAA	NA	NA	NA	NA
>prophage 5
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	1021794	1080271	3039042	capsid,holin,terminase,protease,tail,integrase,head,portal	Lactobacillus_phage(87.27%)	66	1045445:1045463	1080353:1080371
WP_003564220.1|1021794_1022130_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003564222.1|1022321_1023281_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_003578277.1|1023282_1024110_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_003583985.1|1024120_1025176_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_012491289.1|1025241_1026195_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	47.9	8.9e-81
WP_012491290.1|1026778_1028506_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.9	3.3e-182
WP_003569557.1|1028740_1029388_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014566477.1|1029380_1030391_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_014566756.1|1031161_1033528_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003564240.1|1033685_1034333_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_003578292.1|1034538_1036554_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_012491295.1|1036821_1039713_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.2	1.9e-307
WP_003564246.1|1040064_1040604_+	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_003564248.1|1040766_1041654_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.4	1.1e-08
WP_003564250.1|1041650_1042679_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	51.2	2.3e-90
WP_012491296.1|1042683_1043631_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.7	9.2e-54
WP_003564253.1|1044016_1044472_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003564255.1|1044588_1045179_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	52.3	1.1e-52
1045445:1045463	attL	TGTGCAATTTGTGTGCAAT	NA	NA	NA	NA
WP_012491297.1|1045583_1046735_-|integrase	site-specific integrase	integrase	Q8W767	Lactobacillus_phage	100.0	2.2e-219
WP_012491298.1|1046845_1047607_-	hypothetical protein	NA	A0A1B0YA83	Lactobacillus_phage	100.0	1.2e-144
WP_012491299.1|1047625_1047856_+	hypothetical protein	NA	U5U783	Lactobacillus_phage	100.0	7.2e-37
WP_012491300.1|1048111_1048891_-	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	100.0	9.1e-116
WP_012491301.1|1048962_1049367_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1B0Y2S4	Lactobacillus_phage	100.0	2.1e-76
WP_012491302.1|1049363_1049690_-	helix-turn-helix transcriptional regulator	NA	A0A1B0Y3N1	Lactobacillus_phage	100.0	3.4e-56
WP_012491303.1|1049946_1050159_+	helix-turn-helix transcriptional regulator	NA	A0A1B0YC38	Lactobacillus_phage	100.0	3.7e-32
WP_012491304.1|1050161_1050935_+	ORF6N domain-containing protein	NA	A0A1B0YEA7	Lactobacillus_phage	100.0	1.3e-143
WP_012491305.1|1050966_1051290_+	DUF771 domain-containing protein	NA	A0A1B0Y6D5	Lactobacillus_phage	100.0	1.2e-58
WP_012491308.1|1051557_1051869_-	hypothetical protein	NA	A0A1B0YA89	Lactobacillus_phage	100.0	8.2e-52
WP_012491309.1|1051929_1052121_+	hypothetical protein	NA	A0A1B0Y2S8	Lactobacillus_phage	100.0	6.4e-31
WP_012491310.1|1052134_1052374_+	hypothetical protein	NA	A0A1B0Y2S6	Lactobacillus_phage	100.0	7.7e-34
WP_012491311.1|1052378_1052873_+	siphovirus Gp157 family protein	NA	A0A1B0Y2S7	Lactobacillus_phage	100.0	9.9e-84
WP_012491312.1|1052884_1053115_+	hypothetical protein	NA	A0A1B0Y3N2	Lactobacillus_phage	100.0	3.0e-35
WP_012491313.1|1053114_1054482_+	DEAD/DEAH box helicase	NA	A0A1B0YC45	Lactobacillus_phage	100.0	1.6e-264
WP_012491314.1|1054483_1055224_+	AAA family ATPase	NA	A0A1B0YEB5	Lactobacillus_phage	100.0	4.1e-134
WP_012491315.1|1055226_1055736_+	hypothetical protein	NA	A0A1B0Y6E2	Lactobacillus_phage	100.0	4.1e-93
WP_012491316.1|1055802_1056600_+	bifunctional DNA primase/polymerase	NA	A0A1B0Y4T1	Lactobacillus_phage	100.0	1.4e-151
WP_012491317.1|1056604_1057840_+	helicase	NA	A0A1B0Y896	Lactobacillus_phage	100.0	1.1e-237
WP_012491318.1|1058114_1058429_+	VRR-NUC domain-containing protein	NA	A0A1B0YA93	Lactobacillus_phage	100.0	1.4e-54
WP_012491319.1|1058435_1058720_+	hypothetical protein	NA	A0A1B0Y2T1	Lactobacillus_phage	100.0	6.8e-45
WP_014951787.1|1058688_1059036_+	hypothetical protein	NA	A0A1B0Y2S9	Lactobacillus_phage	99.1	2.2e-58
WP_012491321.1|1059028_1059616_+	HNH endonuclease	NA	A0A1B0Y2T0	Lactobacillus_phage	100.0	9.9e-107
WP_012491322.1|1059602_1059857_+	hypothetical protein	NA	A0A1B0Y3N3	Lactobacillus_phage	100.0	2.3e-44
WP_012491323.1|1059853_1060258_+	transcriptional regulator	NA	A0A1B0YC57	Lactobacillus_phage	100.0	9.3e-72
WP_012491324.1|1060422_1060803_+	HNH endonuclease	NA	A0A1B0YEC6	Lactobacillus_phage	100.0	1.5e-71
WP_003582259.1|1060871_1061246_+	hypothetical protein	NA	A0A1B0YE76	Lactobacillus_phage	100.0	3.6e-62
WP_012491326.1|1061248_1062979_+|terminase	terminase large subunit	terminase	A0A1B0Y6B8	Lactobacillus_phage	100.0	0.0e+00
WP_012491327.1|1062997_1064233_+|portal	phage portal protein	portal	A0A1B0Y4Q9	Lactobacillus_phage	100.0	1.2e-234
WP_012491328.1|1064210_1064918_+|protease	Clp protease ClpP	protease	A0A1B0Y857	Lactobacillus_phage	100.0	1.4e-128
WP_012491329.1|1064922_1066152_+|capsid	phage major capsid protein	capsid	A0A1B0YA73	Lactobacillus_phage	100.0	4.3e-229
WP_012491330.1|1066225_1066474_+	hypothetical protein	NA	A0A1B0Y2R9	Lactobacillus_phage	100.0	7.0e-38
WP_003582271.1|1066487_1066814_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1B0Y2R7	Lactobacillus_phage	100.0	7.0e-54
WP_012491255.1|1066752_1067091_+|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	100.0	2.2e-58
WP_012491331.1|1067074_1067404_+	hypothetical protein	NA	A0A1B0Y3M9	Lactobacillus_phage	100.0	3.1e-57
WP_012491332.1|1067393_1067777_+	hypothetical protein	NA	A0A1B0YC24	Lactobacillus_phage	100.0	2.6e-68
WP_012491333.1|1067788_1068436_+	hypothetical protein	NA	A0A1B0Y6C3	Lactobacillus_phage	100.0	1.2e-118
WP_003595114.1|1068512_1068878_+	hypothetical protein	NA	A0A1B0Y865	Lactobacillus_phage	100.0	4.6e-62
WP_012491334.1|1068958_1069120_+	hypothetical protein	NA	A0A1B0Y4R4	Lactobacillus_phage	100.0	5.7e-25
WP_014566481.1|1069139_1072310_+|tail	phage tail tape measure protein	tail	A0A1B0YA78	Lactobacillus_phage	99.9	0.0e+00
WP_012491336.1|1072316_1073012_+	hypothetical protein	NA	A0A1B0Y2S2	Lactobacillus_phage	100.0	8.3e-129
WP_012491337.1|1073008_1077412_+|tail	phage tail protein	tail	A0A1B0Y2S0	Lactobacillus_phage	100.0	0.0e+00
WP_012491263.1|1077440_1077866_+	DUF1617 family protein	NA	A0A1B0Y2S1	Lactobacillus_phage	100.0	8.8e-73
WP_012491338.1|1077868_1078138_+	hypothetical protein	NA	A0A1B0Y3N0	Lactobacillus_phage	100.0	1.3e-40
WP_012491339.1|1078185_1078572_+	hypothetical protein	NA	A0A1B0YC31	Lactobacillus_phage	100.0	5.6e-66
WP_004562059.1|1078552_1078759_+	hypothetical protein	NA	A0A1B0YE97	Lactobacillus_phage	100.0	1.4e-12
WP_012491341.1|1078755_1079217_+|holin	phage holin	holin	A0A1B0Y6C9	Lactobacillus_phage	100.0	1.2e-70
WP_012491342.1|1079218_1080271_+	peptidoglycan recognition protein	NA	A0A1B0Y4R9	Lactobacillus_phage	100.0	2.3e-207
1080353:1080371	attR	TGTGCAATTTGTGTGCAAT	NA	NA	NA	NA
>prophage 6
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	1346590	1402287	3039042	transposase,tRNA,lysis	Leptospira_phage(28.57%)	54	NA	NA
WP_003599410.1|1346590_1347520_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_012491515.1|1347958_1348669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491519.1|1350560_1351142_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012491520.1|1351237_1352317_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_012491521.1|1352321_1353254_-	SIR2 family protein	NA	NA	NA	NA	NA
WP_012491522.1|1353322_1353643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491523.1|1353824_1355579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491524.1|1356184_1356373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491525.1|1356374_1356554_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_012491526.1|1356668_1357277_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_157847124.1|1357201_1357591_+|transposase	transposase	transposase	S5VLC8	Leptospira_phage	37.1	5.1e-11
WP_016364311.1|1357481_1357946_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014951865.1|1357942_1358149_+|transposase	transposase domain-containing protein	transposase	S5VTD3	Leptospira_phage	40.7	2.9e-05
WP_003565106.1|1358455_1359067_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_012491531.1|1359242_1359725_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_003565110.1|1359901_1361605_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_003574834.1|1361913_1363071_+	cysteine desulfurase	NA	NA	NA	NA	NA
WP_012491532.1|1363087_1364305_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_003570094.1|1364610_1365264_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_014566514.1|1365637_1368280_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.4	2.7e-151
WP_012491533.1|1368572_1369850_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_003565122.1|1370041_1370686_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003565124.1|1370747_1371416_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_003565127.1|1371555_1372557_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_012491534.1|1372645_1373506_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003574845.1|1373507_1374038_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_012491535.1|1374051_1374708_+	cell division inhibitor	NA	NA	NA	NA	NA
WP_003565134.1|1374708_1375506_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003565136.1|1376171_1376828_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003565139.1|1376840_1377479_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.5	2.6e-28
WP_003565141.1|1377475_1378288_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012491536.1|1378520_1379954_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_003565145.1|1380038_1380158_-	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_003565147.1|1380508_1380841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003565149.1|1381016_1381448_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_003565152.1|1381450_1382392_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_003565154.1|1382404_1382770_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_014566515.1|1382766_1384914_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_003565157.1|1384928_1385894_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_012491540.1|1385924_1387304_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_003570121.1|1387303_1388395_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_003565163.1|1388400_1389255_+	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003565166.1|1389364_1390711_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003574874.1|1390735_1391995_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003565171.1|1392012_1392468_+	cell division protein SepF	NA	NA	NA	NA	NA
WP_003565173.1|1392479_1392773_+	YggT family protein	NA	NA	NA	NA	NA
WP_012491541.1|1392779_1393559_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_012491542.1|1393616_1394399_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_012491543.1|1394645_1397432_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	27.0	5.4e-86
WP_003570139.1|1397444_1397666_+	cold shock domain-containing protein	NA	NA	NA	NA	NA
WP_003565182.1|1397802_1398708_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_003658327.1|1398883_1400320_+	MFS transporter	NA	NA	NA	NA	NA
WP_003565187.1|1400416_1401628_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	26.3	1.5e-32
WP_003578969.1|1401624_1402287_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
>prophage 7
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	2013922	2035762	3039042	transposase,protease	unidentified_phage(40.0%)	18	NA	NA
WP_012491745.1|2013922_2014684_+|protease	matrixin family metalloprotease	protease	G9I094	Helicoverpa_zea_nudivirus	53.1	1.7e-05
WP_003599410.1|2014851_2015781_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_012491746.1|2015905_2016673_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_012491747.1|2016985_2018581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003566275.1|2019281_2019611_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012491748.1|2019987_2020632_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_012491750.1|2022181_2022826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491751.1|2022806_2023097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103152732.1|2023526_2024313_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_012491754.1|2025011_2025533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123827219.1|2025705_2026822_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	32.6	2.3e-27
WP_003595460.1|2028081_2028990_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003599410.1|2029273_2030203_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_012491757.1|2030316_2031213_-	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_014566584.1|2031216_2032074_-	M55 family metallopeptidase	NA	NA	NA	NA	NA
WP_012491759.1|2032073_2033159_-	M42 family peptidase	NA	NA	NA	NA	NA
WP_012491760.1|2033187_2034807_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002816607.1|2035078_2035762_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
>prophage 8
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	2474908	2536772	3039042	transposase,protease,bacteriocin	unidentified_phage(28.57%)	65	NA	NA
WP_003567328.1|2474908_2475187_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003580845.1|2475210_2475495_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003588783.1|2475688_2475985_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_014566636.1|2476086_2477442_-	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_003580849.1|2477747_2478059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003567340.1|2478131_2478482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491940.1|2478655_2480035_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_012491943.1|2482703_2482841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016370360.1|2483209_2484328_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_003567351.1|2484332_2485139_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_016370359.1|2485500_2485698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566639.1|2486244_2486484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003599800.1|2486756_2486930_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003591780.1|2486968_2487142_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_012491945.1|2487463_2487688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566641.1|2488002_2488167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491947.1|2488404_2489205_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_012491948.1|2489493_2489652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003599808.1|2489767_2490100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566643.1|2490355_2491024_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003588837.1|2491004_2491196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003580886.1|2491514_2491850_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003580888.1|2491968_2492565_-	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_012491950.1|2492835_2493144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003567374.1|2493279_2493495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003567376.1|2493491_2493725_-|bacteriocin	Blp family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_014566644.1|2493996_2494950_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	24.6	4.8e-10
WP_003580891.1|2495154_2495889_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012491951.1|2495914_2497078_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_012491952.1|2497588_2498965_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_012491953.1|2499097_2499856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566645.1|2500147_2501755_-	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_003596096.1|2502142_2504860_+	HAD-IC family P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	29.1	1.2e-61
WP_003580900.1|2505159_2505525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003585579.1|2505678_2507052_-	MFS transporter	NA	NA	NA	NA	NA
WP_012491954.1|2507091_2508621_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_003567401.1|2508866_2509058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003567403.1|2509186_2509825_+	cation transporter	NA	NA	NA	NA	NA
WP_003567405.1|2509845_2510178_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003567408.1|2510298_2511240_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012491956.1|2511236_2512133_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_003567413.1|2512129_2512873_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.9	1.1e-12
WP_012491957.1|2513148_2514615_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_012491958.1|2514815_2515085_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_003599410.1|2515252_2516182_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_003567418.1|2516220_2516340_-	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_003576335.1|2516540_2517458_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003567422.1|2517697_2518339_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012491959.1|2518456_2519089_-	NUDIX hydrolase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003599857.1|2519245_2519770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491960.1|2520032_2521868_+	membrane protein	NA	NA	NA	NA	NA
WP_003585593.1|2522018_2522921_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003567431.1|2523164_2523314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491961.1|2523918_2526312_-	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA	NA
WP_012491962.1|2526486_2527671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566650.1|2527905_2529747_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012491964.1|2529913_2530267_-	CrcB family protein	NA	NA	NA	NA	NA
WP_003567441.1|2530260_2530671_-	CrcB family protein	NA	NA	NA	NA	NA
WP_014566651.1|2531260_2531548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491966.1|2531722_2531983_+	2-phosphoglycerate dehydratase	NA	W6LP63	Streptococcus_phage	61.8	5.0e-10
WP_003567447.1|2532364_2533312_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003567449.1|2533371_2534145_+	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	1.6e-24
WP_003567451.1|2534144_2534927_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_003606005.1|2534923_2535727_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_003599410.1|2535842_2536772_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
>prophage 9
NC_017473	Lacticaseibacillus paracasei, complete sequence	3039042	2992732	3004101	3039042	capsid,terminase,tail,head,portal	uncultured_Caudovirales_phage(37.5%)	17	NA	NA
WP_012492208.1|2992732_2993371_-	helix-turn-helix domain-containing protein	NA	L0P7E1	Lactobacillus_phage	27.6	2.4e-05
WP_003594046.1|2993538_2993814_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012492209.1|2993881_2994103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012492211.1|2994213_2994405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012492212.1|2994451_2994742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566704.1|2994738_2994927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566705.1|2994910_2995723_+	bifunctional DNA primase/polymerase	NA	Q854C1	Mycobacterium_phage	34.2	6.7e-13
WP_012492215.1|2995735_2997322_+	primase	NA	A0A1B1P7L5	Bacillus_phage	27.9	4.0e-25
WP_012492216.1|2997647_2997983_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_012492217.1|2997987_2998173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014952495.1|2998169_2998592_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	45.4	1.2e-21
WP_010489224.1|2998708_2999179_+|terminase	phage terminase small subunit P27 family	terminase	M1PKP2	Streptococcus_phage	26.5	4.6e-06
WP_012492218.1|2999175_3000879_+|terminase	terminase	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	42.1	2.3e-116
WP_014952496.1|3000844_3001024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010489222.1|3001028_3002210_+|portal	phage portal protein	portal	A0A2H4JB06	uncultured_Caudovirales_phage	35.5	2.8e-60
WP_012492220.1|3002196_3003753_+|capsid	phage major capsid protein	capsid	A0A2H4J9X8	uncultured_Caudovirales_phage	32.0	4.6e-34
WP_003574397.1|3003807_3004101_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
>prophage 1
NC_017475	Lacticaseibacillus paracasei plasmid pLC2W, complete sequence	38392	0	19701	38392	transposase	Staphylococcus_phage(60.0%)	18	NA	NA
WP_002819966.1|156_441_+	BRCT domain-containing protein	NA	NA	NA	NA	NA
WP_123827222.1|502_1289_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_003606765.1|1276_1600_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_014566439.1|1955_2834_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_014566843.1|2954_4688_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_003589794.1|4714_6139_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
WP_003589792.1|6187_6523_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_123827223.1|7057_7845_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_003586333.1|8002_8560_-	serine acetyltransferase	NA	NA	NA	NA	NA
WP_003586331.1|8525_9710_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_012807380.1|9731_10643_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	41.7	2.8e-60
WP_016387670.1|11386_14554_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	22.6	1.1e-21
WP_014566850.1|14567_16184_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.3	1.3e-127
WP_015338155.1|16180_16807_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	30.0	2.4e-10
WP_123827224.1|16874_17661_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_014566853.1|17669_18029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003582052.1|18034_18928_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_002816607.1|19017_19701_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
>prophage 2
NC_017475	Lacticaseibacillus paracasei plasmid pLC2W, complete sequence	38392	24576	29755	38392	transposase	Enterococcus_phage(33.33%)	7	NA	NA
WP_014566862.1|24576_25413_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	36.7	1.1e-37
WP_014566863.1|25405_25795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566897.1|25839_26181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566865.1|26173_27466_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	39.9	1.3e-79
WP_015338164.1|27462_27846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003572740.1|28039_28357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123796560.1|28592_29755_-|transposase	IS3-like element ISL1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	33.2	5.1e-30
>prophage 3
NC_017475	Lacticaseibacillus paracasei plasmid pLC2W, complete sequence	38392	35320	35572	38392	transposase	Lactobacillus_phage(100.0%)	1	NA	NA
WP_014566870.1|35320_35572_+|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	92.8	1.5e-35
