assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000194605.1_ASM19460v1	NC_015321	Fluviicola taffensis DSM 16823, complete sequence	1	153391-153496	1	CRISPRCasFinder	no		cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	Orphan	GTGGACAGGATTCGAACCTGTGTCT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	NA|279aa|up_9|NC_015321.1_138746_139583_-,NA|140aa|up_6|NC_015321.1_140698_141118_+,NA|85aa|up_1|NC_015321.1_149211_149466_-,NA|241aa|down_4|NC_015321.1_157915_158638_-,NA|133aa|down_5|NC_015321.1_158728_159127_-,NA|178aa|down_6|NC_015321.1_159256_159790_-,NA|256aa|down_7|NC_015321.1_159891_160659_-,NA|182aa|down_8|NC_015321.1_160841_161387_-,NA|125aa|down_9|NC_015321.1_161383_161758_-	NA|279aa|up_9|NC_015321.1_138746_139583_-	NA	NA|184aa|up_8|NC_015321.1_139676_140228_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|74aa|up_7|NC_015321.1_140341_140563_+	pfam11387, DUF2795, Protein of unknown function (DUF2795)	NA|140aa|up_6|NC_015321.1_140698_141118_+	NA	NA|361aa|up_5|NC_015321.1_141279_142362_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1070aa|up_4|NC_015321.1_142386_145596_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|479aa|up_3|NC_015321.1_145585_147022_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|538aa|up_2|NC_015321.1_147529_149143_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|85aa|up_1|NC_015321.1_149211_149466_-	NA	NA|1125aa|up_0|NC_015321.1_149658_153033_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|457aa|down_0|NC_015321.1_153563_154934_-	cd05233, SDR_c, classical (c) SDRs	NA|238aa|down_1|NC_015321.1_154940_155654_-	pfam18481, DUF5616, Domain of unknown function (DUF5616)	NA|364aa|down_2|NC_015321.1_155839_156931_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|216aa|down_3|NC_015321.1_157008_157656_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|241aa|down_4|NC_015321.1_157915_158638_-	NA	NA|133aa|down_5|NC_015321.1_158728_159127_-	NA	NA|178aa|down_6|NC_015321.1_159256_159790_-	NA	NA|256aa|down_7|NC_015321.1_159891_160659_-	NA	NA|182aa|down_8|NC_015321.1_160841_161387_-	NA	NA|125aa|down_9|NC_015321.1_161383_161758_-	NA
GCF_000194605.1_ASM19460v1	NC_015321	Fluviicola taffensis DSM 16823, complete sequence	2	254826-254921	2	CRISPRCasFinder	no		cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	Orphan	TTTTCCCTAAATCATTTTCGCACTAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	NA,NA|391aa|down_8|NC_015321.1_265138_266311_+	NA|302aa|up_9|NC_015321.1_243974_244880_-	pfam02517, Abi, CAAX protease self-immunity	NA|373aa|up_8|NC_015321.1_245165_246284_-	PRK14289, PRK14289, molecular chaperone DnaJ	NA|190aa|up_7|NC_015321.1_246343_246913_-	cd00446, GrpE, nucleotide exchange factor GrpE	NA|259aa|up_6|NC_015321.1_247016_247793_-	pfam10677, DUF2490, Protein of unknown function (DUF2490)	NA|152aa|up_5|NC_015321.1_247887_248343_-	pfam11396, PepSY_like, Putative beta-lactamase-inhibitor-like, PepSY-like	NA|424aa|up_4|NC_015321.1_248454_249726_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|up_3|NC_015321.1_249722_250400_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|623aa|up_2|NC_015321.1_250527_252396_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|360aa|up_1|NC_015321.1_252492_253572_+	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]	NA|323aa|up_0|NC_015321.1_253671_254640_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|140aa|down_0|NC_015321.1_254988_255408_+	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown]	NA|661aa|down_1|NC_015321.1_255569_257552_+	PRK05667, dnaG, DNA primase; Validated	NA|372aa|down_2|NC_015321.1_257554_258670_+	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|229aa|down_3|NC_015321.1_258766_259453_+	PRK00642, PRK00642, inorganic pyrophosphatase; Provisional	NA|281aa|down_4|NC_015321.1_259543_260386_+	pfam11138, DUF2911, Protein of unknown function (DUF2911)	NA|519aa|down_5|NC_015321.1_260440_261997_+	pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family	NA|500aa|down_6|NC_015321.1_262040_263540_+	pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family	NA|474aa|down_7|NC_015321.1_263595_265017_+	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|391aa|down_8|NC_015321.1_265138_266311_+	NA	NA|127aa|down_9|NC_015321.1_266428_266809_+	cd17535, REC_NarL-like, phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators
GCF_000194605.1_ASM19460v1	NC_015321	Fluviicola taffensis DSM 16823, complete sequence	3	2165807-2165909	3	CRISPRCasFinder	no		cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	Orphan	TGAAAAATGAACAAGCGTTAGTGCAGTTCAACAAAGA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	NA|277aa|up_9|NC_015321.1_2155445_2156276_-,NA|242aa|up_3|NC_015321.1_2161762_2162488_+,NA|161aa|up_1|NC_015321.1_2163437_2163920_+,NA|143aa|down_2|NC_015321.1_2168121_2168550_-	NA|277aa|up_9|NC_015321.1_2155445_2156276_-	NA	NA|381aa|up_8|NC_015321.1_2156299_2157442_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|176aa|up_7|NC_015321.1_2157530_2158058_-	pfam13644, DKNYY, DKNYY family	NA|243aa|up_6|NC_015321.1_2158548_2159277_+	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|481aa|up_5|NC_015321.1_2159286_2160729_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|342aa|up_4|NC_015321.1_2160750_2161776_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|242aa|up_3|NC_015321.1_2161762_2162488_+	NA	NA|283aa|up_2|NC_015321.1_2162552_2163401_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|161aa|up_1|NC_015321.1_2163437_2163920_+	NA	NA|628aa|up_0|NC_015321.1_2163916_2165800_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|466aa|down_0|NC_015321.1_2165933_2167331_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|238aa|down_1|NC_015321.1_2167408_2168122_-	pfam10677, DUF2490, Protein of unknown function (DUF2490)	NA|143aa|down_2|NC_015321.1_2168121_2168550_-	NA	NA|1027aa|down_3|NC_015321.1_2168730_2171811_+	pfam08757, CotH, CotH kinase protein	NA|348aa|down_4|NC_015321.1_2171813_2172857_+	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family	NA|511aa|down_5|NC_015321.1_2173053_2174586_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|342aa|down_6|NC_015321.1_2174837_2175863_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|233aa|down_7|NC_015321.1_2176038_2176737_-	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion]	NA|192aa|down_8|NC_015321.1_2176741_2177317_-	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|79aa|down_9|NC_015321.1_2177477_2177714_+	PRK00982, acpP, acyl carrier protein; Provisional
GCF_000194605.1_ASM19460v1	NC_015321	Fluviicola taffensis DSM 16823, complete sequence	4	3601686-3607116	4,1,2,3	CRISPRCasFinder,PILER-CR,PILER-CR,PILER-CR	no	cas2,cas1,cas9	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	Type II-C, Type II-B, or Type II-C?,Type II-A,Type II-B	GTTGTGATTCGCTTTCAATTTGTATTTTTAGAACGATAGCACACAAC,TGTTGTGATTCGCTTTCAATTTGTATTTTTAGAACGATAGCACACAAC,GTTGTGATTCGCTTTCAATTTGTATTTTTAGAACGATAGCACACAAC,GTTGTGATTCGCTTTCAATTTGTATTTTTAGAACGATAGCACACAAC	47,48,47,47	0	0	NA	NA	NA:NA:NA:NA	70,65,65,65	70	TypeII-C,TypeII-B,orTypeII-C?,TypeII-A,TypeII-B	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	NA|659aa|up_8|NC_015321.1_3590325_3592302_-,NA|200aa|up_3|NC_015321.1_3596389_3596989_-,NA|188aa|down_6|NC_015321.1_3616002_3616566_-	NA|232aa|up_9|NC_015321.1_3589622_3590318_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|659aa|up_8|NC_015321.1_3590325_3592302_-	NA	NA|178aa|up_7|NC_015321.1_3592575_3593109_+	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ	NA|415aa|up_6|NC_015321.1_3593257_3594502_+	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|395aa|up_5|NC_015321.1_3594646_3595831_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|182aa|up_4|NC_015321.1_3595840_3596386_+	PRK00131, aroK, shikimate kinase; Reviewed	NA|200aa|up_3|NC_015321.1_3596389_3596989_-	NA	NA|229aa|up_2|NC_015321.1_3597015_3597702_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|628aa|up_1|NC_015321.1_3597827_3599711_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|593aa|up_0|NC_015321.1_3599835_3601614_+	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	cas2|113aa|down_0|NC_015321.1_3607322_3607661_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|297aa|down_1|NC_015321.1_3607677_3608568_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|324aa|down_2|NC_015321.1_3608637_3609609_-	COG3943, COG3943, Virulence protein [General function prediction only]	NA|200aa|down_3|NC_015321.1_3609615_3610215_-	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein	cas9|1459aa|down_4|NC_015321.1_3610220_3614597_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|306aa|down_5|NC_015321.1_3614990_3615908_-	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF	NA|188aa|down_6|NC_015321.1_3616002_3616566_-	NA	NA|392aa|down_7|NC_015321.1_3616687_3617863_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|501aa|down_8|NC_015321.1_3618038_3619541_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|338aa|down_9|NC_015321.1_3619681_3620695_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_000194605.1_ASM19460v1	NC_015321	Fluviicola taffensis DSM 16823, complete sequence	5	4026306-4026428	5	CRISPRCasFinder	no	cas3	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	Unclear	GATAGCTATCGGGACTCCGTCTCGCTACAAAA	32	0	0	NA	NA	NA	1	1	Unclear	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	NA|130aa|up_1|NC_015321.1_4024699_4025089_-,NA|64aa|down_5|NC_015321.1_4029579_4029771_-,NA|158aa|down_9|NC_015321.1_4032632_4033106_-	NA|537aa|up_9|NC_015321.1_4011926_4013537_+	PRK05380, pyrG, CTP synthetase; Validated	NA|650aa|up_8|NC_015321.1_4013957_4015907_+	PRK01318, PRK01318, membrane protein insertase; Provisional	NA|405aa|up_7|NC_015321.1_4016018_4017233_-	COG3065, Slp, Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|162aa|up_6|NC_015321.1_4017378_4017864_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|525aa|up_5|NC_015321.1_4017925_4019500_-	cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins	NA|862aa|up_4|NC_015321.1_4019601_4022187_+	cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins	NA|208aa|up_3|NC_015321.1_4022223_4022847_+	pfam18347, DUF5606, Domain of unknown function (DUF5606)	NA|565aa|up_2|NC_015321.1_4022930_4024625_+	cd09606, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|130aa|up_1|NC_015321.1_4024699_4025089_-	NA	NA|250aa|up_0|NC_015321.1_4025153_4025903_+	TIGR04571, LmtA_Leptospira, lipid A Kdo2 1-phosphate O-methyltransferase	NA|192aa|down_0|NC_015321.1_4026504_4027080_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|209aa|down_1|NC_015321.1_4027255_4027882_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|300aa|down_2|NC_015321.1_4027934_4028834_-	pfam13650, Asp_protease_2, Aspartyl protease	NA|99aa|down_3|NC_015321.1_4028861_4029158_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|106aa|down_4|NC_015321.1_4029242_4029560_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|64aa|down_5|NC_015321.1_4029579_4029771_-	NA	NA|69aa|down_6|NC_015321.1_4029767_4029974_-	pfam11127, DUF2892, Protein of unknown function (DUF2892)	NA|210aa|down_7|NC_015321.1_4030030_4030660_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|573aa|down_8|NC_015321.1_4030705_4032424_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|158aa|down_9|NC_015321.1_4032632_4033106_-	NA
GCF_000194605.1_ASM19460v1	NC_015321	Fluviicola taffensis DSM 16823, complete sequence	6	4102239-4102348	6	CRISPRCasFinder	no		cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	Orphan	GCAGCTAAAAAGCCAGCTACAAAAAC	26	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,PrimPol,DEDDh,DinG,RT,PD-DExK,csa3,cas2,cas1,cas9	NA|139aa|up_7|NC_015321.1_4094559_4094976_-,NA|187aa|down_9|NC_015321.1_4113034_4113595_+	NA|312aa|up_9|NC_015321.1_4092717_4093653_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|313aa|up_8|NC_015321.1_4093621_4094560_-	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like	NA|139aa|up_7|NC_015321.1_4094559_4094976_-	NA	NA|390aa|up_6|NC_015321.1_4095207_4096377_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|449aa|up_5|NC_015321.1_4096376_4097723_+	cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|320aa|up_4|NC_015321.1_4097822_4098782_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|91aa|up_3|NC_015321.1_4098962_4099235_+	cd13831, HU, histone-like DNA-binding protein HU	NA|123aa|up_2|NC_015321.1_4099578_4099947_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|416aa|up_1|NC_015321.1_4099943_4101191_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|226aa|up_0|NC_015321.1_4101307_4101985_+	cd18092, SpoU-like_TrmH, SAM-dependent tRNA methylase related to TrmH	NA|357aa|down_0|NC_015321.1_4102829_4103900_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|322aa|down_1|NC_015321.1_4104056_4105022_+	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains	NA|412aa|down_2|NC_015321.1_4105034_4106270_+	pfam06245, DUF1015, Protein of unknown function (DUF1015)	NA|221aa|down_3|NC_015321.1_4106272_4106935_+	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|199aa|down_4|NC_015321.1_4106931_4107528_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|460aa|down_5|NC_015321.1_4107671_4109051_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|232aa|down_6|NC_015321.1_4109157_4109853_-	cd01828, sialate_O-acetylesterase_like2, sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases	NA|673aa|down_7|NC_015321.1_4109973_4111992_+	pfam03571, Peptidase_M49, Peptidase family M49	NA|181aa|down_8|NC_015321.1_4112141_4112684_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|187aa|down_9|NC_015321.1_4113034_4113595_+	NA
