The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	27282	70036	4102186	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	77634	136108	4102186	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	164894	225405	4102186	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	233337	286925	4102186	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	555309	614609	4102186	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568428_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584034_585174_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	620764	674505	4102186	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673554_674505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	723443	763393	4102186	transposase,protease,integrase,tRNA	Pseudomonas_phage(33.33%)	29	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729288_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736221_736422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754250_755201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|755394_756210_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756342_757782_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757795_758137_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758191_759847_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759998_761009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761141_761915_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762442_763393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	773320	820938	4102186	transposase,protease,tRNA,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|773320_774271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774409_775162_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|775436_777125_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|777144_778404_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778418_779513_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|779509_781573_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|781648_782329_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782606_783980_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783981_785001_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785064_786036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786100_787051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787149_787992_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787991_788327_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788397_789816_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790095_791136_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791215_791467_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791577_792741_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793024_793879_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793875_794766_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794808_795720_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795746_796439_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796453_797434_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797446_799588_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799636_800605_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800595_801264_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801224_802160_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802156_803053_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803049_803772_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803762_803927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804100_804604_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804880_805996_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806138_806603_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806750_807290_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807311_808646_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808659_808965_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809389_809971_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_062826579.1|810052_811003_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812492_813398_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|813453_815061_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815314_816820_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816834_817299_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817588_818539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|818701_819232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819231_819543_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819987_820938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	996797	1099190	4102186	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996797_997913_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998013_998832_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998929_999541_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999700_1001077_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001139_1001598_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001682_1002378_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1002439_1002721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003283_1004036_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004080_1005157_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005153_1006104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007486_1008488_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008490_1009687_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009707_1010511_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012387_1013137_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021313_1022003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022863_1023814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026294_1027515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029251_1030538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030576_1031950_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034555_1035104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035245_1036721_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038713_1039502_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042112_1043039_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043910_1044861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044905_1047332_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047380_1048073_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051338_1052685_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052697_1053462_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054450_1055401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055462_1056572_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058047_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058952_1059903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1061866_1062817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065731_1066472_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067299_1068250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074230_1075469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076546_1077674_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081227_1082178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086293_1087244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087300_1088449_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088529_1089480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090011_1090809_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090856_1091510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091466_1092555_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092719_1094945_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097222_1098119_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098239_1099190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	1129576	1200547	4102186	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129576_1130527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134079_1135030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136878_1137883_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144676_1145627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145794_1147186_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150771_1151290_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151384_1151630_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151857_1152172_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152270_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159671_1161987_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163329_1165003_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169984_1170935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174261_1175065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175061_1175793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175850_1177140_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182392_1182731_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183438_1183705_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185411_1186362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186358_1187690_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188950_1190951_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190943_1191585_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191581_1191989_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191985_1192786_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192860_1193565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193596_1194391_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194387_1195338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195436_1196387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196485_1196920_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197002_1199339_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010929632.1|1199530_1200547_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	1247941	1328816	4102186	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1247941_1248892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248888_1249839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250099_1251128_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251207_1252506_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252502_1253084_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253396_1257443_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257683_1265345_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1286518_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1292547_1293750_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1321640_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_161633141.1|1322538_1322682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324375_1326103_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326214_1327573_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327865_1328816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	1448211	1500364	4102186	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1448211_1449162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449328_1449682_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449694_1450057_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450098_1450524_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450726_1451983_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452181_1453162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453311_1454553_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454651_1455602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455610_1456306_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459127_1459727_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459737_1461903_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461926_1463711_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463710_1463800_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464494_1464767_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464766_1466833_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466829_1467780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468944_1469277_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469273_1469960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1469946_1470906_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1470938_1473308_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473307_1473940_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474041_1475382_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475428_1476784_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1477074_1477311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477498_1477816_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478088_1478604_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1478874_1479630_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480182_1480842_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481136_1483341_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483451_1484675_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484797_1485772_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485839_1487033_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487047_1487848_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487844_1489701_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489697_1490303_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490321_1491707_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492432_1493659_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1493747_1494530_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494628_1495579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495605_1496379_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496390_1497632_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499413_1500364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	1544289	1604200	4102186	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1544289_1544778_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544895_1545474_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545579_1545948_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546046_1546997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547003_1548116_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548802_1550005_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1550208_1552869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1552881_1556286_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556953_1559179_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559225_1559552_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559602_1560211_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560309_1561260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561329_1562094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1562090_1562627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562793_1563645_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563704_1564331_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564327_1565278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565376_1566489_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566478_1567480_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567585_1569097_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569093_1570398_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570509_1571070_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571337_1571892_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572347_1572563_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572817_1575415_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575411_1576599_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1577256_1577871_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1577959_1579081_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579098_1580004_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580896_1581847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582028_1582781_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582849_1583509_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583505_1584234_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584246_1586526_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586550_1586754_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586795_1587428_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587563_1588481_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588477_1589191_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589428_1590199_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590203_1590803_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591047_1592538_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592596_1592881_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1593446_1594373_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594509_1595250_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595416_1596793_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596974_1597880_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599531_1601334_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1601451_1602102_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602200_1603151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_080334663.1|1603249_1604200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	1649372	1704963	4102186	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649372_1650323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650381_1651155_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651147_1652704_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652700_1653651_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654977_1655580_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655819_1656521_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656514_1657297_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657481_1658432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658530_1659268_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659457_1660216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660262_1661252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661429_1662398_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663937_1664906_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664914_1665856_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666329_1667340_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667330_1668845_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668841_1670188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670190_1671225_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671274_1672900_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673452_1674403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674507_1675455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675508_1677323_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677315_1677990_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678119_1681194_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681207_1681507_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681821_1682445_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682688_1683558_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683535_1684480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684565_1685492_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685604_1686384_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686374_1687571_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687601_1688552_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688773_1689463_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019249354.1|1689527_1690283_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690334_1691327_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691336_1692290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692405_1693368_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694769_1695198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695194_1696145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696438_1697161_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697599_1698787_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1698790_1699141_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700890_1701862_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701875_1702589_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702593_1703511_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703617_1703914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704012_1704963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	1937715	2007367	4102186	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937715_1940373_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940450_1941653_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941649_1942162_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942284_1942722_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1942998_1943949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944047_1944998_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1945161_1947057_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1947170_1947338_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947401_1947638_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1948006_1949158_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950721_1951672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952123_1953125_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953297_1954155_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954151_1955414_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955514_1955889_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1955961_1957149_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957233_1958004_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958117_1958882_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958832_1960134_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1960130_1960937_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1962681_1963653_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963809_1964322_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964480_1965455_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966455_1967250_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967275_1968082_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968192_1968783_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968793_1969972_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970074_1970449_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970701_1972033_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972099_1975330_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976820_1977567_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977651_1978113_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978150_1979209_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979171_1981001_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981040_1981613_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983037_1983859_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984177_1985500_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985859_1986495_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986454_1987405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988275_1989148_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989225_1990365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990723_1991980_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991985_1992513_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992517_1993336_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993335_1994058_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994079_1994394_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994411_1995560_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995590_1996466_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996462_1997782_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997854_1999051_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999061_2000549_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003143_2004043_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004180_2005146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005244_2006195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006416_2007367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	2018863	2068259	4102186	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018863_2019814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020951_2021248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021422_2022775_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022917_2023934_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025913_2026927_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2027013_2027919_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028075_2028420_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028577_2029036_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029049_2031266_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031262_2032324_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032352_2033327_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033278_2034097_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034109_2034718_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2034892_2035288_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035306_2036746_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036774_2037122_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037140_2038091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038743_2039694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039777_2041595_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041668_2042316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042328_2043258_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043427_2043892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044139_2044820_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044868_2046560_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046575_2047127_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047123_2047495_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047607_2048444_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048454_2048979_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049076_2049256_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049385_2050360_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050490_2050847_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050836_2051712_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051810_2052695_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052716_2054012_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054960_2055611_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2055698_2057219_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057476_2059342_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060387_2061338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2061355_2061496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2062310_2062670_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062657_2064094_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064090_2064744_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2064740_2065934_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066037_2067312_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067308_2068259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	2079463	2120154	4102186	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2079463_2080414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080512_2081463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081422_2081836_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082120_2082420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2082829_2085112_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2085577_2085772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2085797_2087828_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087847_2088060_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088337_2088877_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2088990_2090286_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090362_2091520_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091703_2092603_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092621_2093926_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093891_2094998_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095085_2095322_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095460_2096531_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096534_2097890_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2097916_2099074_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099079_2099718_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2099719_2101015_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2101064_2102351_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102366_2102873_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102869_2104018_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104045_2104471_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104793_2107676_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107768_2108524_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109289_2110639_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110737_2111688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111786_2112737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112810_2113284_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113309_2114518_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114514_2115288_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115287_2115911_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116076_2116337_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116640_2117222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117288_2117543_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117529_2120154_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	2147937	2213485	4102186	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2147937_2148888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2149088_2149898_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2150022_2150973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150969_2151863_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151987_2152182_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152181_2152523_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152532_2154395_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154524_2155037_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155039_2155363_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155364_2155775_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155812_2157024_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157041_2157554_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157769_2158261_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158513_2160550_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160627_2161830_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2161958_2162609_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2164166_2165117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165687_2165900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165917_2166649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166683_2167325_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2167317_2167986_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170198_2170975_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2170996_2172154_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172150_2172582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2172578_2173376_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2173395_2173797_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173863_2174835_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174900_2176124_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176351_2177302_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177425_2179879_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180067_2181372_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181476_2182130_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182132_2183443_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2183621_2184200_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184311_2184512_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184857_2185424_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185507_2185711_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186017_2186338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186379_2186661_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186735_2187992_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188374_2188704_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190273_2191095_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191094_2192234_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192240_2193137_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2193151_2195059_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195418_2198031_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198083_2200384_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200380_2201589_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2201850_2202225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2202221_2203172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203270_2205265_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205324_2206290_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206279_2209141_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209143_2209650_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209754_2210963_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210964_2211903_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212064_2212538_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212534_2213485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	2299662	2363240	4102186	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2299662_2300613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2300914_2301391_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2302014_2303652_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2303682_2304996_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2305129_2305447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2305547_2306870_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2306866_2307817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2307915_2308866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2309395_2310418_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2310446_2311277_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2311293_2312991_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2313055_2314132_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2314291_2315155_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2315185_2315755_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2315771_2316623_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2317680_2318562_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2318636_2319626_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2319688_2320639_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2320701_2321559_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2321618_2322107_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2323679_2324870_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2324866_2326453_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2326471_2327539_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2327643_2329188_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2329607_2331182_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2331298_2332306_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2332302_2333142_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2333146_2334784_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2334780_2335731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2335873_2337148_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2337177_2337468_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2337540_2338554_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2338573_2339836_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2339838_2340762_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2340758_2342252_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2342262_2343195_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2343376_2344702_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2344736_2346092_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2346152_2347673_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2347827_2348559_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2348656_2349967_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2349982_2350894_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2350884_2351478_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2351539_2351926_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2351937_2352408_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2352419_2353043_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2353063_2355811_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2362289_2363240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	2508181	2566425	4102186	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2508181_2509132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509611_2510268_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510282_2511950_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511952_2512582_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512793_2513888_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514032_2514845_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2514848_2516432_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2516602_2517733_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517919_2518996_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519077_2519728_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519742_2521146_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521429_2522248_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2522244_2522949_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523848_2524964_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2524997_2525372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525394_2526552_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526564_2526798_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527432_2530402_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530416_2530626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530777_2531407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2531403_2533461_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533517_2534198_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534194_2534755_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534761_2535859_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536011_2536605_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536601_2537894_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537907_2538450_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538459_2539296_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539329_2540391_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540432_2541485_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541500_2541803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541944_2542895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2543073_2544768_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544764_2545850_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545897_2546797_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546807_2547452_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548473_2551716_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551726_2552881_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553107_2554070_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554168_2555119_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555217_2556168_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2556177_2556867_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2556926_2557364_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2557409_2558303_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2558350_2559523_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2559519_2560674_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2560870_2561221_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2561210_2561645_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2561661_2562612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2562759_2563227_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2563207_2564365_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2564430_2565357_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2565474_2566425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	2608705	2675205	4102186	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608705_2609656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610025_2610598_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610600_2611611_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611603_2612104_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612114_2612456_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2612524_2613259_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613275_2613545_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613567_2614356_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614402_2615419_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615635_2617078_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617256_2618876_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2618996_2620817_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620895_2622428_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2622461_2624108_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624177_2625200_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625217_2626351_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626353_2627043_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627042_2627828_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627871_2628636_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628674_2630096_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630161_2630866_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630913_2631333_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631345_2631753_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631936_2632647_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632773_2633064_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633081_2633564_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638069_2639224_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639529_2640546_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640792_2641581_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641647_2642328_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642324_2643095_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643193_2644144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644199_2645117_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645127_2646306_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646325_2647321_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648909_2649518_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649505_2650546_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650563_2651526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651522_2652716_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652712_2653510_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653535_2654522_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654540_2656580_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2656781_2657462_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657475_2658387_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658383_2658962_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659100_2660006_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660013_2663433_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663420_2666021_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666976_2667609_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2668002_2668761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2668757_2669960_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670147_2671098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2672005_2673151_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673137_2673893_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674009_2674189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2674254_2675205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	2857608	3008208	4102186	transposase,tRNA,holin	uncultured_Mediterranean_phage(15.79%)	117	NA	NA
WP_010929956.1|2857608_2858559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2858657_2859539_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2859616_2860996_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2861034_2861880_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2861895_2862210_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2862242_2862779_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2862951_2863527_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2863629_2864367_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2864434_2866072_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2866179_2866935_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2866922_2867885_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2867992_2868787_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2868848_2870924_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2871088_2873464_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2873544_2874900_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876378_2877101_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877155_2878139_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2878268_2879219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879215_2880118_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880205_2880964_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880976_2882068_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882165_2883593_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883822_2885037_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2885082_2887953_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890363_2890852_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890977_2893674_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893828_2896111_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2896276_2896909_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2897007_2897958_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2898004_2898559_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898626_2899472_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899541_2900510_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2900509_2902306_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2904205_2908132_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2908867_2912098_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2912379_2913207_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2913240_2913936_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2913928_2915209_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2915218_2916196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2916177_2917878_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2917980_2919084_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2919114_2919870_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2919876_2921397_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921439_2921742_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921738_2922371_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922449_2924315_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2924311_2925106_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2925134_2926250_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927154_2928033_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2928032_2928857_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2929024_2929975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2930187_2933037_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2933018_2933747_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933887_2935351_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935347_2935719_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935736_2937050_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2937086_2937545_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2937657_2938608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938604_2939618_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939757_2940744_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2941102_2941810_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2942390_2943341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2943492_2944095_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2944113_2944746_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944790_2945042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944983_2946870_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2946888_2947731_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2947727_2949086_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2949306_2950101_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2950331_2951825_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2952060_2954142_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2954336_2955377_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2955511_2956528_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2956549_2957407_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2957451_2958228_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2958595_2959546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2959572_2960037_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2961243_2963532_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2963648_2964521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2964563_2965718_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965752_2966583_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2966666_2968211_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2968253_2968613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968614_2969028_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969068_2969386_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2969470_2970187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2970450_2971872_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971938_2974686_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2975018_2976035_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2976370_2977012_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977102_2978539_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978696_2979770_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2979766_2980903_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2981047_2981392_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2981458_2983339_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2983388_2984324_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2984656_2985673_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986610_2988038_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988034_2989057_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989046_2989520_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989660_2990548_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990544_2992188_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2992184_2993192_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2994022_2995039_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995138_2995771_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995779_2996169_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996221_2997274_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998137_2999844_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999917_3000418_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000432_3002490_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002516_3002810_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002911_3003859_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003871_3004747_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004867_3005428_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005462_3005786_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006221_3006959_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007257_3008208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	3029159	3101653	4102186	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3029159_3030110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030152_3031328_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031549_3033340_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033352_3035014_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3035026_3037732_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038024_3039779_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039775_3040402_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040398_3041250_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3041379_3043440_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043626_3044241_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044386_3044638_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_041337085.1|3044707_3046090_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046086_3049266_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050073_3050991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051042_3051774_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051833_3052406_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053914_3054931_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055068_3056118_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056222_3057173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057268_3057994_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058204_3058585_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058890_3059763_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059770_3060151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060304_3061579_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063066_3063975_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064772_3065837_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3067673_3068708_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068897_3069539_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069621_3071448_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071691_3072621_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072620_3073370_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073441_3074356_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074375_3075521_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075581_3076493_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076573_3077524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077622_3078207_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078241_3079231_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079227_3080169_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080165_3081386_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081428_3081743_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081934_3082294_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082295_3084011_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084198_3084870_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084884_3086213_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086209_3087109_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087195_3088281_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3088273_3089404_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3089406_3092088_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092458_3093040_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093165_3093891_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093887_3094565_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094780_3095962_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096734_3096917_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096946_3097897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3098026_3098419_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098695_3099607_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099731_3100706_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100702_3101653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	3233136	3302139	4102186	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3233136_3234087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234083_3235103_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235112_3237821_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237968_3238625_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238723_3239674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239821_3240715_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240914_3242609_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242643_3243570_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243638_3244736_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244754_3245618_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245629_3246412_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246408_3247527_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247523_3249056_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249096_3250104_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250248_3250971_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250986_3252009_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252325_3253060_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253144_3254890_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254886_3255639_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255683_3256640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256728_3257295_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257302_3258163_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258192_3258921_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258952_3259636_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260473_3261388_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261452_3262361_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262451_3263876_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263877_3265200_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265196_3267335_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267412_3272533_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272633_3272942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273011_3273569_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273584_3275066_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275120_3276974_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277236_3278574_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278608_3280606_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280623_3282672_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282802_3283669_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283937_3284903_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285017_3286166_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286590_3286902_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286935_3287196_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287345_3288479_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288549_3289686_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289851_3290646_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290708_3291152_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291267_3292218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292340_3292748_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292820_3295016_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295237_3296188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296147_3296672_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296803_3297775_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297894_3300339_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300354_3300945_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301188_3302139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	3317585	3417698	4102186	protease,transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3317585_3318536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319267_3319645_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319629_3320331_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320474_3321167_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321166_3322270_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322379_3324752_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324748_3326308_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326332_3327130_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327161_3328307_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328411_3329854_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329856_3331086_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333223_3334174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335303_3335861_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335836_3336187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336355_3337150_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337146_3338196_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338195_3338885_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338971_3339469_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339500_3340817_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340833_3341808_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341844_3342303_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342302_3342983_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342985_3343414_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343466_3345197_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345262_3345835_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345815_3346502_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346857_3347529_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347857_3348079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348078_3348360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348356_3348872_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348871_3349423_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349401_3349644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349648_3350461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350460_3350724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350764_3350962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350942_3351359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351363_3355320_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355312_3355702_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355698_3356232_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356299_3356659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356668_3359281_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359306_3359597_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359614_3359944_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359953_3360472_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360726_3361227_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361234_3361657_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361653_3362052_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362048_3362444_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3362443_3362632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362645_3363128_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363190_3363442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364116_3365067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365495_3366098_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366220_3366463_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366468_3367524_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367552_3368971_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368973_3370251_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370237_3370723_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371362_3372313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3372569_3373259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373251_3373503_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3374057_3374669_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374740_3374947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375198_3376149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376247_3377321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377488_3378283_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378322_3378847_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378839_3380582_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380791_3381550_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381552_3382260_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382276_3383158_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383168_3383927_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383895_3384651_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384720_3386139_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386160_3386811_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386944_3387280_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387368_3388319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388395_3390216_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390220_3391294_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391416_3392385_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392458_3393370_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393388_3393961_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394041_3394590_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394589_3396179_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396248_3396488_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396528_3397554_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397619_3398801_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398897_3399350_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399359_3400700_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3401016_3402054_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402435_3402795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402878_3403820_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403894_3404845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405138_3406233_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3406323_3407196_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407217_3408057_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408132_3409650_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409746_3410847_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410863_3411286_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3411308_3411521_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411567_3412488_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412670_3413420_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413422_3413752_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3414039_3415392_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3415403_3415787_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415848_3416649_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416747_3417698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP009751	Bordetella pertussis B1917 chromosome, complete genome	4102186	3703264	3836190	4102186	transposase,integrase,tRNA	uncultured_Mediterranean_phage(10.34%)	114	3747907:3747924	3792547:3792564
WP_005013747.1|3703264_3704215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3704211_3704847_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3704976_3705876_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3705971_3706463_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3706509_3707475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3708608_3709850_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3709963_3710980_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3711014_3711491_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3711633_3712542_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3712655_3713768_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3713868_3714354_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3714490_3715741_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3715842_3716355_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3716453_3717404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3717469_3718408_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3718430_3719057_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3719053_3719710_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3719706_3720309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3720315_3720903_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3721083_3721653_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3721723_3723043_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3723149_3723341_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3723592_3724882_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3725036_3726032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3726116_3726791_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3726787_3727738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3727899_3729141_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3729137_3730082_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3730200_3731151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3731110_3732040_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3732093_3732429_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3732473_3733238_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3733261_3734002_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3734009_3735563_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3735597_3736575_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3736847_3737429_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3737480_3744383_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3744829_3744961_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3745226_3745433_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3746437_3747097_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3747124_3748270_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3747907:3747924	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3748410_3748746_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3748820_3749681_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3749944_3750646_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3750815_3751211_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3751320_3752271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3752281_3752923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3753089_3753332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3753430_3754381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3754416_3754884_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3755117_3755495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3755491_3755674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3755677_3756664_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3756660_3757308_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3757365_3757893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3757929_3759114_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3759124_3759466_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3759578_3759779_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3759775_3760765_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3762251_3764222_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3764463_3764862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3764870_3765794_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3766251_3767202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3767432_3769124_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3769172_3769445_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3769441_3769813_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3769908_3770043_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3770448_3771858_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3771860_3772970_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3773064_3775518_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3775636_3776428_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3776547_3777975_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3778013_3778985_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3779403_3780567_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3780654_3781500_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3783056_3784007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3784561_3784936_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3785010_3786069_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3786092_3787043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3789924_3791094_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3791194_3792802_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3792547:3792564	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3792848_3794870_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3794898_3795144_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3795157_3796348_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3796543_3797509_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3797531_3798671_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3798882_3799845_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3799968_3801993_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3802189_3804433_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3804711_3805170_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3806097_3808719_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3808782_3811410_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3811561_3812626_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3812625_3813396_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3813404_3814238_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3814250_3815030_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3815103_3816537_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3816564_3817323_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3817378_3819229_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3819322_3819799_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3819815_3820736_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3820842_3821343_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3821716_3822409_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3822717_3823668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3823664_3827438_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3827774_3829664_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3829675_3830569_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3830672_3831470_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3831466_3832318_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3832379_3833060_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3833087_3833423_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3833423_3834383_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3834403_3834892_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3835173_3836190_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
