assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	1	331810-332625	1	CRT	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNG	18	0	0	NA	NA	NA	16	16	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|86aa|up_9|NZ_CP012090.1_321031_321289_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|398aa|up_8|NZ_CP012090.1_321605_322799_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_7|NZ_CP012090.1_322834_324517_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_6|NZ_CP012090.1_324533_326729_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_5|NZ_CP012090.1_326842_327976_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_4|NZ_CP012090.1_327972_328593_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_3|NZ_CP012090.1_328689_329271_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_2|NZ_CP012090.1_329200_329926_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_1|NZ_CP012090.1_330015_330936_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_0|NZ_CP012090.1_330975_331404_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|903aa|down_0|NZ_CP012090.1_334690_337399_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP012090.1_337689_339300_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP012090.1_339323_340232_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|614aa|down_3|NZ_CP012090.1_340509_342351_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP012090.1_342347_343964_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP012090.1_343960_347953_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP012090.1_347949_348258_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP012090.1_348260_349802_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP012090.1_349850_350144_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP012090.1_350173_350464_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	2	364789-365487	1	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	365077-365118|365152-365184	NZ_CP012090.1_373093-373134|NZ_CP012090.1_371908-371940	NA	10	10	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP012090.1_361801_362104_+,NA|161aa|down_1|NZ_CP012090.1_374882_375365_-,NA|410aa|down_5|NZ_CP012090.1_377481_378711_+	NA|262aa|up_9|NZ_CP012090.1_356496_357282_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP012090.1_357270_358074_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP012090.1_358083_359481_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP012090.1_359659_361435_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP012090.1_361577_361805_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP012090.1_361801_362104_+	NA	NA|74aa|up_3|NZ_CP012090.1_362151_362373_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP012090.1_362369_362795_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP012090.1_362930_363563_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP012090.1_363559_364468_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP012090.1_374223_374895_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP012090.1_374882_375365_-	NA	NA|239aa|down_2|NZ_CP012090.1_375422_376139_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP012090.1_376240_376897_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP012090.1_376966_377458_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP012090.1_377481_378711_+	NA	NA|621aa|down_6|NZ_CP012090.1_378865_380728_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP012090.1_380799_381186_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NZ_CP012090.1_381188_381824_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP012090.1_381911_382796_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	3	629593-629730	2	CRT	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	629611-629628|629611-629628|629695-629712	NZ_CP012090.1_23824-23841|NZ_CP012090.1_1191174-1191191|NZ_CP012090.1_3440837-3440820	NA	3	3	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP012090.1_620347_620509_-,NA|478aa|up_0|NZ_CP012090.1_626608_628042_-,NA|450aa|down_2|NZ_CP012090.1_631365_632715_-,NA|93aa|down_5|NZ_CP012090.1_634245_634524_-	NA|325aa|up_9|NZ_CP012090.1_618117_619092_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP012090.1_619133_620351_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP012090.1_620347_620509_-	NA	NA|106aa|up_6|NZ_CP012090.1_620555_620873_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_5|NZ_CP012090.1_621019_622888_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP012090.1_622783_623791_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP012090.1_623872_624751_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP012090.1_624767_625562_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP012090.1_625558_626599_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP012090.1_626608_628042_-	NA	NA|219aa|down_0|NZ_CP012090.1_630029_630686_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP012090.1_630682_631345_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP012090.1_631365_632715_-	NA	NA|381aa|down_3|NZ_CP012090.1_632726_633869_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP012090.1_633883_634186_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP012090.1_634245_634524_-	NA	NA|418aa|down_6|NZ_CP012090.1_634520_635774_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP012090.1_635893_636280_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP012090.1_636342_637227_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP012090.1_637322_638225_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	4	690331-690407	2	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP012090.1_676226_676634_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP012090.1_676693_677380_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP012090.1_677533_680167_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP012090.1_680189_682577_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP012090.1_682714_683437_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP012090.1_683433_684231_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP012090.1_684232_685120_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP012090.1_685125_686340_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP012090.1_686336_687368_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP012090.1_687364_688810_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP012090.1_691542_693093_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP012090.1_693144_693537_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP012090.1_693533_693791_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP012090.1_693973_695209_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP012090.1_695459_695873_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP012090.1_695869_696106_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP012090.1_696209_696716_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|177aa|down_7|NZ_CP012090.1_696829_697360_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP012090.1_697343_698105_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP012090.1_698161_698473_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	5	1352876-1353948	3	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1353076-1353097	NZ_CP012090.1_3201836-3201857	NA	15	15	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP012090.1_1344639_1344957_+,NA	NA|103aa|up_9|NZ_CP012090.1_1342154_1342463_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP012090.1_1342459_1344079_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP012090.1_1344639_1344957_+	NA	NA|209aa|up_6|NZ_CP012090.1_1345091_1345718_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP012090.1_1345783_1346116_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP012090.1_1346131_1347388_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP012090.1_1347515_1348727_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP012090.1_1348799_1350278_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP012090.1_1350274_1351660_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP012090.1_1351737_1352772_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP012090.1_1354802_1355204_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP012090.1_1355200_1355458_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP012090.1_1355540_1356500_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP012090.1_1356524_1357487_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|246aa|down_4|NZ_CP012090.1_1357485_1358223_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP012090.1_1358303_1360271_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP012090.1_1360288_1361113_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP012090.1_1361281_1361764_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP012090.1_1361835_1362660_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP012090.1_1362856_1363795_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	6	1638001-1638176	1	PILER-CR	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCGTACAA	18	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|269aa|up_2|NZ_CP012090.1_1630926_1631733_+,NA	NA|202aa|up_9|NZ_CP012090.1_1625468_1626074_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|up_8|NZ_CP012090.1_1626123_1626318_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|130aa|up_7|NZ_CP012090.1_1626379_1626769_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|261aa|up_6|NZ_CP012090.1_1626801_1627584_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|352aa|up_5|NZ_CP012090.1_1627594_1628650_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|311aa|up_4|NZ_CP012090.1_1628959_1629892_+	pfam00934, PE, PE family	NA|317aa|up_3|NZ_CP012090.1_1629969_1630920_+	cd07302, CHD, cyclase homology domain	NA|269aa|up_2|NZ_CP012090.1_1630926_1631733_+	NA	NA|353aa|up_1|NZ_CP012090.1_1631895_1632954_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|832aa|up_0|NZ_CP012090.1_1632953_1635449_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_0|NZ_CP012090.1_1638792_1639851_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|405aa|down_1|NZ_CP012090.1_1639847_1641062_+	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|295aa|down_2|NZ_CP012090.1_1641058_1641943_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|401aa|down_3|NZ_CP012090.1_1641939_1643142_+	PRK03244, argD, acetylornithine transaminase	NA|308aa|down_4|NZ_CP012090.1_1643138_1644062_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|171aa|down_5|NZ_CP012090.1_1644058_1644571_+	PRK03341, PRK03341, arginine repressor; Provisional	NA|399aa|down_6|NZ_CP012090.1_1644579_1645776_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|471aa|down_7|NZ_CP012090.1_1645855_1647268_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|354aa|down_8|NZ_CP012090.1_1647376_1648438_+	COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|2127aa|down_9|NZ_CP012090.1_1648520_1654901_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	7	1852649-1852903	3	CRT	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	1852730-1852747|1852730-1852747|1852820-1852837	NZ_CP012090.1_399389-399372|NZ_CP012090.1_605665-605648|NZ_CP012090.1_969559-969576	NA	5	5	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP012090.1_1852008_1852272_-,NA	NA|165aa|up_9|NZ_CP012090.1_1838358_1838853_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|211aa|up_8|NZ_CP012090.1_1839245_1839878_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP012090.1_1840236_1843062_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP012090.1_1843288_1844149_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP012090.1_1844189_1845056_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP012090.1_1845060_1846947_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP012090.1_1846962_1848996_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP012090.1_1849115_1851341_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP012090.1_1851616_1852012_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP012090.1_1852008_1852272_-	NA	NA|346aa|down_0|NZ_CP012090.1_1854040_1855078_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP012090.1_1855077_1856445_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_CP012090.1_1856618_1858058_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP012090.1_1858090_1859542_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP012090.1_1859571_1860522_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP012090.1_1860536_1860953_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP012090.1_1861230_1861653_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP012090.1_1861701_1862004_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP012090.1_1862000_1862315_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP012090.1_1862314_1864048_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	8	1935862-1936081	4	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP012090.1_1924331_1924739_-,NA|127aa|down_5|NZ_CP012090.1_1943597_1943978_-	NA|155aa|up_9|NZ_CP012090.1_1917659_1918124_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP012090.1_1918299_1920522_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP012090.1_1920559_1921003_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP012090.1_1921116_1921710_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP012090.1_1921792_1922398_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP012090.1_1922497_1923502_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP012090.1_1923601_1924354_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP012090.1_1924331_1924739_-	NA	NA|767aa|up_1|NZ_CP012090.1_1924873_1927174_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|up_0|NZ_CP012090.1_1931438_1932700_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|155aa|down_0|NZ_CP012090.1_1938108_1938573_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP012090.1_1938670_1939534_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP012090.1_1939571_1940843_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP012090.1_1941114_1942230_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP012090.1_1942220_1943561_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP012090.1_1943597_1943978_-	NA	NA|621aa|down_6|NZ_CP012090.1_1944134_1945997_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP012090.1_1946004_1946484_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP012090.1_1946720_1947494_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP012090.1_1947497_1948265_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	9	2893858-2895005	2,5,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	14,14,15	15	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_7|NZ_CP012090.1_2887137_2887392_-,NA|135aa|up_6|NZ_CP012090.1_2887539_2887944_+,NA|64aa|up_5|NZ_CP012090.1_2887940_2888132_+,NA|86aa|up_4|NZ_CP012090.1_2889718_2889976_+,NA|104aa|up_3|NZ_CP012090.1_2890080_2890392_+,NA|203aa|up_2|NZ_CP012090.1_2890811_2891420_+,NA	NA|348aa|up_9|NZ_CP012090.1_2885452_2886496_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_8|NZ_CP012090.1_2886686_2886962_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_7|NZ_CP012090.1_2887137_2887392_-	NA	NA|135aa|up_6|NZ_CP012090.1_2887539_2887944_+	NA	NA|64aa|up_5|NZ_CP012090.1_2887940_2888132_+	NA	NA|86aa|up_4|NZ_CP012090.1_2889718_2889976_+	NA	NA|104aa|up_3|NZ_CP012090.1_2890080_2890392_+	NA	NA|203aa|up_2|NZ_CP012090.1_2890811_2891420_+	NA	NA|470aa|up_1|NZ_CP012090.1_2891490_2892900_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP012090.1_2892896_2893709_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP012090.1_2895036_2896298_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_CP012090.1_2896661_2897372_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_CP012090.1_2897381_2897756_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_CP012090.1_2897752_2900191_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_4|NZ_CP012090.1_2900187_2900976_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_CP012090.1_2901309_2901855_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_CP012090.1_2902126_2903011_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_CP012090.1_2903013_2903901_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_CP012090.1_2904205_2904751_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_CP012090.1_2904747_2905017_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	10	3576452-3576609	5	CRT	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCCCCGCCGGCCCCGCC	23	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|242aa|up_9|NZ_CP012090.1_3562325_3563051_+,NA|82aa|up_3|NZ_CP012090.1_3571513_3571759_-,NA|186aa|down_2|NZ_CP012090.1_3579219_3579777_+,NA|176aa|down_4|NZ_CP012090.1_3581359_3581887_-,NA|71aa|down_7|NZ_CP012090.1_3583751_3583964_-	NA|242aa|up_9|NZ_CP012090.1_3562325_3563051_+	NA	NA|646aa|up_8|NZ_CP012090.1_3563751_3565689_+	pfam00823, PPE, PPE family	NA|585aa|up_7|NZ_CP012090.1_3565878_3567633_-	pfam00934, PE, PE family	NA|511aa|up_6|NZ_CP012090.1_3567838_3569371_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|391aa|up_5|NZ_CP012090.1_3569377_3570550_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|295aa|up_4|NZ_CP012090.1_3570560_3571445_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|82aa|up_3|NZ_CP012090.1_3571513_3571759_-	NA	NA|143aa|up_2|NZ_CP012090.1_3572135_3572564_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_1|NZ_CP012090.1_3572587_3572845_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|758aa|up_0|NZ_CP012090.1_3572935_3575209_-	pfam00934, PE, PE family	NA|49aa|down_0|NZ_CP012090.1_3578457_3578604_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|169aa|down_1|NZ_CP012090.1_3578716_3579223_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|186aa|down_2|NZ_CP012090.1_3579219_3579777_+	NA	NA|176aa|down_3|NZ_CP012090.1_3580154_3580682_-	pfam00934, PE, PE family	NA|176aa|down_4|NZ_CP012090.1_3581359_3581887_-	NA	NA|283aa|down_5|NZ_CP012090.1_3582001_3582850_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|183aa|down_6|NZ_CP012090.1_3583054_3583603_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|71aa|down_7|NZ_CP012090.1_3583751_3583964_-	NA	NA|166aa|down_8|NZ_CP012090.1_3583960_3584458_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|71aa|down_9|NZ_CP012090.1_3584505_3584718_-	PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	11	3743270-3743846	6	CRT	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCNCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP012090.1_3758078_3758366_-	NA|147aa|up_9|NZ_CP012090.1_3720354_3720795_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_CP012090.1_3720828_3721698_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_CP012090.1_3721718_3722729_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_6|NZ_CP012090.1_3723001_3723646_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_CP012090.1_3723712_3724942_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_CP012090.1_3725224_3726574_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_CP012090.1_3726585_3727725_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_CP012090.1_3727721_3728453_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3690aa|up_1|NZ_CP012090.1_3728461_3739531_-	pfam00823, PPE, PPE family	NA|327aa|up_0|NZ_CP012090.1_3739579_3740560_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP012090.1_3745948_3746206_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP012090.1_3746461_3755935_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP012090.1_3756560_3757007_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP012090.1_3757043_3757784_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP012090.1_3758078_3758366_-	NA	NA|130aa|down_5|NZ_CP012090.1_3771860_3772250_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_6|NZ_CP012090.1_3772263_3772557_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_7|NZ_CP012090.1_3772553_3773399_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_8|NZ_CP012090.1_3773522_3773798_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_9|NZ_CP012090.1_3773794_3774052_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	12	3852723-3852812	6	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_6|NZ_CP012090.1_3844759_3844990_+,NA|121aa|up_5|NZ_CP012090.1_3845093_3845456_-,NA|121aa|down_0|NZ_CP012090.1_3853797_3854160_-,NA|52aa|down_2|NZ_CP012090.1_3856001_3856157_-,NA|52aa|down_3|NZ_CP012090.1_3856181_3856337_-	NA|212aa|up_9|NZ_CP012090.1_3842438_3843074_-	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|169aa|up_8|NZ_CP012090.1_3843070_3843577_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|387aa|up_7|NZ_CP012090.1_3843573_3844734_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_6|NZ_CP012090.1_3844759_3844990_+	NA	NA|121aa|up_5|NZ_CP012090.1_3845093_3845456_-	NA	NA|177aa|up_4|NZ_CP012090.1_3846414_3846945_+	pfam00823, PPE, PPE family	NA|252aa|up_3|NZ_CP012090.1_3847262_3848018_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|421aa|up_2|NZ_CP012090.1_3848101_3849363_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|100aa|up_1|NZ_CP012090.1_3851501_3851801_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_CP012090.1_3851886_3852429_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP012090.1_3853797_3854160_-	NA	NA|179aa|down_1|NZ_CP012090.1_3854322_3854859_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP012090.1_3856001_3856157_-	NA	NA|52aa|down_3|NZ_CP012090.1_3856181_3856337_-	NA	NA|461aa|down_4|NZ_CP012090.1_3857529_3858912_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP012090.1_3858949_3860371_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|285aa|down_6|NZ_CP012090.1_3861037_3861892_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_7|NZ_CP012090.1_3862113_3863988_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_8|NZ_CP012090.1_3864009_3864486_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)	NA|281aa|down_9|NZ_CP012090.1_3864495_3865338_+	pfam12740, Chlorophyllase2, Chlorophyllase enzyme
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	13	3954667-3956280	7	CRT	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	CNCCGGCGGNACCGGCGGCNNNGGCGGCNCCGGCGG	36	1	7	3955267-3955302|3955267-3955302|3955267-3955302|3955267-3955302|3955267-3955302|3955267-3955302|3955267-3955302	NZ_CP012090.1_3953127-3953162|NZ_CP012090.1_3953439-3953474|NZ_CP012090.1_3953790-3953825|NZ_CP012090.1_3954148-3954183|NZ_CP012090.1_3954306-3954341|NZ_CP012090.1_3954658-3954693|NZ_CP012090.1_3938682-3938717	NA	20	20	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP012090.1_3959748_3960588_+	NA|281aa|up_9|NZ_CP012090.1_3925016_3925859_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_8|NZ_CP012090.1_3925893_3926658_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_7|NZ_CP012090.1_3926883_3927837_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_6|NZ_CP012090.1_3927861_3928053_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_5|NZ_CP012090.1_3928267_3929470_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_4|NZ_CP012090.1_3929494_3930616_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_3|NZ_CP012090.1_3930686_3932195_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1381aa|up_2|NZ_CP012090.1_3932365_3936508_+	pfam00934, PE, PE family	NA|516aa|up_1|NZ_CP012090.1_3941825_3943373_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_0|NZ_CP012090.1_3943369_3944206_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|549aa|down_0|NZ_CP012090.1_3957141_3958788_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP012090.1_3958861_3959653_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP012090.1_3959748_3960588_+	NA	NA|399aa|down_3|NZ_CP012090.1_3960642_3961839_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP012090.1_3961867_3962578_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|344aa|down_5|NZ_CP012090.1_3962642_3963674_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|335aa|down_6|NZ_CP012090.1_3963745_3964750_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP012090.1_3964765_3965830_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP012090.1_3965846_3967031_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP012090.1_3967072_3968104_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_000193185.2_ASM19318v2	NZ_CP012090	Mycobacterium tuberculosis W-148 chromosome, complete genome	14	4117233-4117321	7	CRISPRCasFinder	no		csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,WYL,cas4,DEDDh,c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP012090.1_4107819_4108590_-,NA|233aa|up_0|NZ_CP012090.1_4116337_4117036_-,NA|126aa|down_6|NZ_CP012090.1_4122556_4122934_+	NA|388aa|up_9|NZ_CP012090.1_4103490_4104654_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP012090.1_4104650_4105703_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP012090.1_4106201_4107065_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP012090.1_4107819_4108590_-	NA	NA|549aa|up_5|NZ_CP012090.1_4108586_4110233_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP012090.1_4110229_4111093_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP012090.1_4111085_4112012_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP012090.1_4112013_4113639_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP012090.1_4114346_4116302_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP012090.1_4116337_4117036_-	NA	NA|173aa|down_0|NZ_CP012090.1_4117381_4117900_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP012090.1_4117900_4118884_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP012090.1_4118876_4120070_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP012090.1_4120075_4120897_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|216aa|down_4|NZ_CP012090.1_4121028_4121676_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP012090.1_4121711_4122449_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP012090.1_4122556_4122934_+	NA	NA|225aa|down_7|NZ_CP012090.1_4123032_4123707_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP012090.1_4123812_4124607_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP012090.1_4124613_4125069_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
