assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000189515.1_ASM18951v1	NC_017467	Lactobacillus helveticus H10, complete sequence	1	578826-581585	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	Type I-U,Type I-C, Type I-U?	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	40,40,41	41	TypeI-U?,TypeI-C,TypeI-U	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	NA,NA|174aa|down_7|NC_017467.1_591411_591933_+,NA|177aa|down_8|NC_017467.1_592083_592614_+	NA|199aa|up_9|NC_017467.1_566644_567241_+	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|514aa|up_8|NC_017467.1_567242_568784_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|420aa|up_7|NC_017467.1_568796_570056_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	cas3|845aa|up_6|NC_017467.1_570557_573092_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|248aa|up_5|NC_017467.1_573106_573850_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|658aa|up_4|NC_017467.1_573849_575823_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|284aa|up_3|NC_017467.1_575825_576677_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|219aa|up_2|NC_017467.1_576679_577336_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|NC_017467.1_577332_578364_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_017467.1_578373_578664_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|888aa|down_0|NC_017467.1_582183_584847_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_1|NC_017467.1_584855_585686_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_2|NC_017467.1_585682_586285_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|156aa|down_3|NC_017467.1_586287_586755_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|444aa|down_4|NC_017467.1_586757_588089_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|303aa|down_5|NC_017467.1_588120_589029_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|645aa|down_6|NC_017467.1_589319_591254_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|174aa|down_7|NC_017467.1_591411_591933_+	NA	NA|177aa|down_8|NC_017467.1_592083_592614_+	NA	NA|417aa|down_9|NC_017467.1_593076_594327_+	pfam04087, DUF389, Domain of unknown function (DUF389)
GCF_000189515.1_ASM18951v1	NC_017467	Lactobacillus helveticus H10, complete sequence	2	706414-706497	2	CRISPRCasFinder	no		cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	Orphan	GTGTATTCTCCACGTATGTGGAG	23	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	NA|205aa|up_6|NC_017467.1_699197_699812_+,NA|71aa|up_3|NC_017467.1_702798_703011_-,NA|168aa|up_2|NC_017467.1_703209_703713_+,NA|135aa|up_0|NC_017467.1_704667_705072_-,NA|97aa|down_3|NC_017467.1_708519_708810_+,NA|98aa|down_9|NC_017467.1_714627_714921_+	NA|286aa|up_9|NC_017467.1_697116_697974_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|116aa|up_8|NC_017467.1_698094_698442_+	cd17273, RMtype1_S_EcoJA69PI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|216aa|up_7|NC_017467.1_698462_699110_+	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|205aa|up_6|NC_017467.1_699197_699812_+	NA	NA|415aa|up_5|NC_017467.1_699894_701139_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|394aa|up_4|NC_017467.1_701260_702442_+	pfam03217, SLAP, SLAP domain	NA|71aa|up_3|NC_017467.1_702798_703011_-	NA	NA|168aa|up_2|NC_017467.1_703209_703713_+	NA	NA|207aa|up_1|NC_017467.1_704107_704728_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|up_0|NC_017467.1_704667_705072_-	NA	NA|109aa|down_0|NC_017467.1_706526_706853_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|294aa|down_1|NC_017467.1_706857_707739_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|221aa|down_2|NC_017467.1_707753_708416_-	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|97aa|down_3|NC_017467.1_708519_708810_+	NA	NA|220aa|down_4|NC_017467.1_709665_710325_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|225aa|down_5|NC_017467.1_710305_710980_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|down_6|NC_017467.1_710989_711730_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|287aa|down_7|NC_017467.1_711742_712603_+	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold	NA|105aa|down_8|NC_017467.1_712649_712964_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|98aa|down_9|NC_017467.1_714627_714921_+	NA
GCF_000189515.1_ASM18951v1	NC_017467	Lactobacillus helveticus H10, complete sequence	3	1642306-1642485	2	PILER-CR	no		cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	Orphan	ATGTGGGATTTGAACCCACGC	21	0	0	NA	NA	NA	2	2	Orphan	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	NA,NA|126aa|down_1|NC_017467.1_1643758_1644136_-,NA|115aa|down_3|NC_017467.1_1646603_1646948_-,NA|114aa|down_9|NC_017467.1_1653518_1653860_-	NA|541aa|up_9|NC_017467.1_1625708_1627331_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|361aa|up_8|NC_017467.1_1627434_1628517_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|490aa|up_7|NC_017467.1_1629859_1631329_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|177aa|up_6|NC_017467.1_1631619_1632150_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|443aa|up_5|NC_017467.1_1632162_1633491_+	PRK10720, PRK10720, uracil transporter; Provisional	NA|279aa|up_4|NC_017467.1_1633545_1634382_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|272aa|up_3|NC_017467.1_1636375_1637191_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|159aa|up_2|NC_017467.1_1637230_1637707_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|171aa|up_1|NC_017467.1_1640171_1640684_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|489aa|up_0|NC_017467.1_1640691_1642158_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|167aa|down_0|NC_017467.1_1642653_1643154_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|126aa|down_1|NC_017467.1_1643758_1644136_-	NA	NA|393aa|down_2|NC_017467.1_1645364_1646543_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|115aa|down_3|NC_017467.1_1646603_1646948_-	NA	NA|67aa|down_4|NC_017467.1_1647282_1647483_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|444aa|down_5|NC_017467.1_1647577_1648909_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|308aa|down_6|NC_017467.1_1649004_1649928_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|457aa|down_7|NC_017467.1_1650369_1651740_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|459aa|down_8|NC_017467.1_1652105_1653482_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|114aa|down_9|NC_017467.1_1653518_1653860_-	NA
GCF_000189515.1_ASM18951v1	NC_017467	Lactobacillus helveticus H10, complete sequence	4	2004248-2004400	3	CRISPRCasFinder	no	cas14j	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	Unclear	TTTGAACAAAACACATCATATACCATATTAGTTCGAATATCAAACTATT	49	0	0	NA	NA	NA	1	1	TypeV	cas14j,cas3,csa3,cas2,cas14k,cas5,cas8c,cas7,cas4,cas1,DEDDh,DinG,WYL,Cas14u_CAS-V	NA,NA	NA|460aa|up_9|NC_017467.1_1996717_1998097_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|139aa|up_8|NC_017467.1_1998110_1998527_-	cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway	NA|157aa|up_7|NC_017467.1_1998531_1999002_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|410aa|up_6|NC_017467.1_1999005_2000235_-	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|244aa|up_5|NC_017467.1_2000256_2000988_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|306aa|up_4|NC_017467.1_2000987_2001905_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|81aa|up_3|NC_017467.1_2001914_2002157_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|328aa|up_2|NC_017467.1_2002215_2003199_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|156aa|up_1|NC_017467.1_2003195_2003663_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|149aa|up_0|NC_017467.1_2003692_2004139_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|83aa|down_0|NC_017467.1_2005842_2006091_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|130aa|down_1|NC_017467.1_2007841_2008231_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|415aa|down_2|NC_017467.1_2008473_2009718_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|296aa|down_3|NC_017467.1_2009911_2010799_+	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism]	NA|756aa|down_4|NC_017467.1_2012685_2014953_+	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|178aa|down_5|NC_017467.1_2015910_2016444_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|419aa|down_6|NC_017467.1_2016714_2017971_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|80aa|down_7|NC_017467.1_2018088_2018328_-	pfam13333, rve_2, Integrase core domain	NA|396aa|down_8|NC_017467.1_2020207_2021395_+	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily	NA|280aa|down_9|NC_017467.1_2021391_2022231_+	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase
