assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000189455.2_ASM18945v3	NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	1	1814355-1814438	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCCAACACAGAAGCTGGCCAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|1275aa|up_9|NZ_CP025395.1_1801129_1804954_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|199aa|up_8|NZ_CP025395.1_1804974_1805571_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_7|NZ_CP025395.1_1805599_1806457_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_6|NZ_CP025395.1_1806556_1806868_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_5|NZ_CP025395.1_1806932_1808009_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_4|NZ_CP025395.1_1808095_1808407_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|215aa|up_3|NZ_CP025395.1_1809844_1810489_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP025395.1_1810503_1811295_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP025395.1_1811844_1812693_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP025395.1_1812696_1814106_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP025395.1_1814654_1815077_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP025395.1_1815093_1815789_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP025395.1_1815785_1817447_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP025395.1_1817853_1819122_+	pfam03486, HI0933_like, HI0933-like protein	NA|2186aa|down_4|NZ_CP025395.1_1819238_1825796_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP025395.1_1826122_1826434_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP025395.1_1826455_1828873_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP025395.1_1829160_1830342_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP025395.1_1830451_1831405_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP025395.1_1831401_1831965_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_000189455.2_ASM18945v3	NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	2	1923170-1923297	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|NZ_CP025395.1_1915269_1915665_-,NA|51aa|up_6|NZ_CP025395.1_1916325_1916478_-,NA	NA|274aa|up_9|NZ_CP025395.1_1912416_1913238_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP025395.1_1913688_1915074_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP025395.1_1915269_1915665_-	NA	NA|51aa|up_6|NZ_CP025395.1_1916325_1916478_-	NA	NA|200aa|up_5|NZ_CP025395.1_1916502_1917102_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP025395.1_1917260_1917731_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|NZ_CP025395.1_1917735_1918863_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|up_2|NZ_CP025395.1_1919013_1919736_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP025395.1_1919728_1921186_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP025395.1_1921443_1922505_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP025395.1_1931314_1931761_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP025395.1_1931857_1932808_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP025395.1_1932813_1933269_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP025395.1_1933349_1934639_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP025395.1_1934931_1936026_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP025395.1_1936215_1937952_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP025395.1_1938242_1938785_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP025395.1_1939087_1940125_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP025395.1_1940276_1941254_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP025395.1_1941514_1942351_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_000189455.2_ASM18945v3	NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	3	2001801-2001885	3	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGTCCACACCCCAACTTGCA	26	1	4	2001827-2001859|2001827-2001859|2001827-2001859|2001827-2001859	NZ_CP025395.1_1843293-1843325|NZ_CP025395.1_2001712-2001744|NZ_CP025395.1_2073127-2073159|NZ_CP025395.1_2750521-2750553	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP025395.1_1995946_1996222_+,NA|129aa|up_1|NZ_CP025395.1_2000204_2000591_-,NA|138aa|down_1|NZ_CP025395.1_2003326_2003740_-,NA|37aa|down_2|NZ_CP025395.1_2003768_2003879_-,NA|31aa|down_6|NZ_CP025395.1_2006884_2006977_-	NA|419aa|up_9|NZ_CP025395.1_1993869_1995126_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP025395.1_1995128_1995329_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP025395.1_1995475_1995940_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP025395.1_1995946_1996222_+	NA	NA|406aa|up_5|NZ_CP025395.1_1996499_1997717_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP025395.1_1997829_1998459_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP025395.1_1998448_1999492_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP025395.1_1999488_2000190_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP025395.1_2000204_2000591_-	NA	NA|253aa|up_0|NZ_CP025395.1_2000807_2001566_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP025395.1_2002151_2003138_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP025395.1_2003326_2003740_-	NA	NA|37aa|down_2|NZ_CP025395.1_2003768_2003879_-	NA	NA|244aa|down_3|NZ_CP025395.1_2003964_2004696_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP025395.1_2004697_2006011_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP025395.1_2006302_2006803_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP025395.1_2006884_2006977_-	NA	DEDDh|185aa|down_7|NZ_CP025395.1_2007193_2007748_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP025395.1_2007814_2008885_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP025395.1_2009130_2009661_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000189455.2_ASM18945v3	NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	4	2194209-2194297	4	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	TTACAACTTTAGTTGTTAGGGGCTCTTATGCA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP025395.1_2189084_2189315_-,NA|364aa|up_0|NZ_CP025395.1_2193103_2194195_+,NA|31aa|down_0|NZ_CP025395.1_2194394_2194487_+	NA|237aa|up_9|NZ_CP025395.1_2184692_2185403_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP025395.1_2185523_2185967_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP025395.1_2186166_2186580_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP025395.1_2187037_2188411_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP025395.1_2189084_2189315_-	NA	NA|313aa|up_4|NZ_CP025395.1_2189345_2190284_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP025395.1_2190718_2191384_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP025395.1_2191535_2191856_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP025395.1_2191857_2192838_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP025395.1_2193103_2194195_+	NA	NA|31aa|down_0|NZ_CP025395.1_2194394_2194487_+	NA	NA|286aa|down_1|NZ_CP025395.1_2194634_2195492_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_2|NZ_CP025395.1_2195559_2196342_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|668aa|down_3|NZ_CP025395.1_2198737_2200741_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|602aa|down_4|NZ_CP025395.1_2200892_2202698_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP025395.1_2203378_2204917_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP025395.1_2204951_2207084_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP025395.1_2207095_2207530_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP025395.1_2207529_2208636_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2484aa|down_9|NZ_CP025395.1_2208954_2216406_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000189455.2_ASM18945v3	NZ_CP025395	Staphylococcus aureus O46 chromosome, complete genome	5	2317933-2318019	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTTC	31	1	13	2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988|2317964-2317988	NZ_CP025395.1_1164375-1164351|NZ_CP025395.1_205069-205093|NZ_CP025395.1_634989-634965|NZ_CP025395.1_1446861-1446885|NZ_CP025395.1_1669753-1669777|NZ_CP025395.1_2090473-2090449|NZ_CP025395.1_2454354-2454330|NZ_CP025395.1_2508540-2508564|NZ_CP025395.1_833116-833140|NZ_CP025395.1_1160344-1160320|NZ_CP025395.1_1757157-1757133|NZ_CP025395.1_2001907-2001931|NZ_CP025395.1_2454410-2454386	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP025395.1_2308396_2308561_+,NA|106aa|up_8|NZ_CP025395.1_2308795_2309113_+,NA|84aa|up_5|NZ_CP025395.1_2314237_2314489_+,NA|57aa|up_0|NZ_CP025395.1_2317628_2317799_+,NA	NA|55aa|up_9|NZ_CP025395.1_2308396_2308561_+	NA	NA|106aa|up_8|NZ_CP025395.1_2308795_2309113_+	NA	NA|1056aa|up_7|NZ_CP025395.1_2309299_2312467_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP025395.1_2312583_2313849_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP025395.1_2314237_2314489_+	NA	NA|255aa|up_4|NZ_CP025395.1_2314480_2315245_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP025395.1_2315407_2315848_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP025395.1_2315840_2317052_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP025395.1_2317152_2317503_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP025395.1_2317628_2317799_+	NA	NA|341aa|down_0|NZ_CP025395.1_2318194_2319217_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP025395.1_2319236_2319836_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP025395.1_2319842_2320076_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP025395.1_2320081_2320528_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP025395.1_2320541_2321027_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP025395.1_2321023_2322283_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP025395.1_2322345_2322840_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP025395.1_2322841_2323348_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP025395.1_2323378_2324383_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP025395.1_2324551_2325157_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
