assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000187005.1_ASM18700v1	NC_014974	Thermus scotoductus SA-01, complete sequence	1	318764-318862	1	CRISPRCasFinder	no		c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	Orphan	CCAGGCGCGCCCGCCTTAAGGGGA	24	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	NA|335aa|up_6|NC_014974.1_313575_314580_+,NA|218aa|down_2|NC_014974.1_322848_323502_-,NA|172aa|down_7|NC_014974.1_326069_326585_-	NA|405aa|up_9|NC_014974.1_310953_312168_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|258aa|up_8|NC_014974.1_312240_313014_+	TIGR02127, Orotidine_5'-phosphate_decarboxylase, orotidine 5'-phosphate decarboxylase, subfamily 2	NA|184aa|up_7|NC_014974.1_313019_313571_+	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family	NA|335aa|up_6|NC_014974.1_313575_314580_+	NA	NA|323aa|up_5|NC_014974.1_314576_315545_+	PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	NA|177aa|up_4|NC_014974.1_315659_316190_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|237aa|up_3|NC_014974.1_316186_316897_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|68aa|up_2|NC_014974.1_316897_317101_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|139aa|up_1|NC_014974.1_317097_317514_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|405aa|up_0|NC_014974.1_317525_318740_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|469aa|down_0|NC_014974.1_320854_322261_-	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|down_1|NC_014974.1_322318_322708_-	cd14797, DUF302, Uncharacterized domain family DUF302	NA|218aa|down_2|NC_014974.1_322848_323502_-	NA	NA|79aa|down_3|NC_014974.1_323498_323735_-	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|270aa|down_4|NC_014974.1_323854_324664_+	pfam13386, DsbD_2, Cytochrome C biogenesis protein transmembrane region	NA|207aa|down_5|NC_014974.1_324680_325301_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|253aa|down_6|NC_014974.1_325304_326063_-	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,	NA|172aa|down_7|NC_014974.1_326069_326585_-	NA	NA|374aa|down_8|NC_014974.1_326595_327717_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|226aa|down_9|NC_014974.1_327700_328378_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000187005.1_ASM18700v1	NC_014974	Thermus scotoductus SA-01, complete sequence	2	575014-575590	2,1,1	CRISPRCasFinder,PILER-CR,CRT	no		c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	Orphan	AGTAGTCCCCACGCACGTGGGGATGGCCCG,GTAGTCCCCACGCACGTGGGGATGGCCCG,GTAGTCCCCACGCACGTGGGGATGGCCCG	30,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	9,9,9	9	Orphan	c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	NA|101aa|up_3|NC_014974.1_572668_572971_+,NA	NA|195aa|up_9|NC_014974.1_566545_567130_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|309aa|up_8|NC_014974.1_567695_568622_-	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	NA|379aa|up_7|NC_014974.1_568891_570028_-	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)	NA|368aa|up_6|NC_014974.1_570066_571170_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|165aa|up_5|NC_014974.1_571166_571661_-	pfam00731, AIRC, AIR carboxylase	NA|319aa|up_4|NC_014974.1_571708_572665_+	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily	NA|101aa|up_3|NC_014974.1_572668_572971_+	NA	NA|177aa|up_2|NC_014974.1_572967_573498_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|232aa|up_1|NC_014974.1_573499_574195_-	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family	NA|119aa|up_0|NC_014974.1_574472_574829_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|146aa|down_0|NC_014974.1_575717_576155_-	pfam06271, RDD, RDD family	NA|311aa|down_1|NC_014974.1_576148_577081_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|382aa|down_2|NC_014974.1_577114_578260_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|378aa|down_3|NC_014974.1_578341_579475_+	cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle)	NA|270aa|down_4|NC_014974.1_579543_580353_-	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB	NA|294aa|down_5|NC_014974.1_580355_581237_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|302aa|down_6|NC_014974.1_581281_582187_-	PRK00089, era, GTPase Era; Reviewed	NA|334aa|down_7|NC_014974.1_582308_583310_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|303aa|down_8|NC_014974.1_583349_584258_-	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|299aa|down_9|NC_014974.1_584360_585257_+	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily
GCF_000187005.1_ASM18700v1	NC_014974	Thermus scotoductus SA-01, complete sequence	3	1182085-1184314	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	Type I-E	CGGGCCATCCCCACGCGTGTGGGGACTAC,CGGGCCATCCCCACGCGTGTGGGGACTAC,GGGCCATCCCCACGCGTGTGGGGACTAC,CGGGCCATCCCCACGCGTGTGGGGACTAC	29,29,28,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B:I-E,II-B	36,36,35,35	36	TypeI-E	c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	NA|194aa|up_6|NC_014974.1_1174005_1174587_-,NA|372aa|up_5|NC_014974.1_1174597_1175713_-,NA|112aa|up_3|NC_014974.1_1180230_1180566_+,NA|127aa|up_0|NC_014974.1_1181257_1181638_-,NA	NA|287aa|up_9|NC_014974.1_1164819_1165680_-	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|755aa|up_8|NC_014974.1_1168109_1170374_+	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|962aa|up_7|NC_014974.1_1170491_1173377_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|194aa|up_6|NC_014974.1_1174005_1174587_-	NA	NA|372aa|up_5|NC_014974.1_1174597_1175713_-	NA	NA|708aa|up_4|NC_014974.1_1176096_1178220_-	cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria	NA|112aa|up_3|NC_014974.1_1180230_1180566_+	NA	NA|106aa|up_2|NC_014974.1_1180575_1180893_-	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|98aa|up_1|NC_014974.1_1180915_1181209_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|127aa|up_0|NC_014974.1_1181257_1181638_-	NA	cas2|115aa|down_0|NC_014974.1_1184384_1184729_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|down_1|NC_014974.1_1184682_1185657_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|206aa|down_2|NC_014974.1_1185664_1186282_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|225aa|down_3|NC_014974.1_1186271_1186946_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|375aa|down_4|NC_014974.1_1186947_1188072_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|172aa|down_5|NC_014974.1_1188087_1188603_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|485aa|down_6|NC_014974.1_1188599_1190054_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|928aa|down_7|NC_014974.1_1190483_1193267_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|323aa|down_8|NC_014974.1_1193276_1194245_-	pfam13280, WYL, WYL domain	NA|98aa|down_9|NC_014974.1_1197314_1197608_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]
GCF_000187005.1_ASM18700v1	NC_014974	Thermus scotoductus SA-01, complete sequence	4	1194463-1197065	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	Type I-E	GTAGTCCCCACGCATGTGGGGATGGCCC,GTAGTCCCCACGCATGTGGGGATGGCCCG,GTAGTCCCCACGCATGTGGGGATGGCCCG	28,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	42,42,42	42	TypeI-E	c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	NA|127aa|up_9|NC_014974.1_1181257_1181638_-,NA|103aa|down_2|NC_014974.1_1199258_1199567_-,NA|441aa|down_3|NC_014974.1_1201283_1202606_+	NA|127aa|up_9|NC_014974.1_1181257_1181638_-	NA	cas2|115aa|up_8|NC_014974.1_1184384_1184729_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|up_7|NC_014974.1_1184682_1185657_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|206aa|up_6|NC_014974.1_1185664_1186282_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|225aa|up_5|NC_014974.1_1186271_1186946_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|375aa|up_4|NC_014974.1_1186947_1188072_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|172aa|up_3|NC_014974.1_1188087_1188603_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|485aa|up_2|NC_014974.1_1188599_1190054_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|928aa|up_1|NC_014974.1_1190483_1193267_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|323aa|up_0|NC_014974.1_1193276_1194245_-	pfam13280, WYL, WYL domain	NA|98aa|down_0|NC_014974.1_1197314_1197608_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|410aa|down_1|NC_014974.1_1197902_1199132_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|103aa|down_2|NC_014974.1_1199258_1199567_-	NA	NA|441aa|down_3|NC_014974.1_1201283_1202606_+	NA	NA|478aa|down_4|NC_014974.1_1202874_1204308_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|664aa|down_5|NC_014974.1_1205912_1207904_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|401aa|down_6|NC_014974.1_1208025_1209228_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|513aa|down_7|NC_014974.1_1209236_1210775_-	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B	NA|678aa|down_8|NC_014974.1_1210779_1212813_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|134aa|down_9|NC_014974.1_1212809_1213211_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_000187005.1_ASM18700v1	NC_014974	Thermus scotoductus SA-01, complete sequence	5	1583361-1583467	5	CRISPRCasFinder	no		c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	Orphan	TCTGCGGTGGTTGCGGTGGTTTGCGGTGGTTG	32	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,csa3,cas3,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,Cas9_archaeal	NA|168aa|up_6|NC_014974.1_1580004_1580508_-,NA|163aa|up_5|NC_014974.1_1580482_1580971_-,NA|115aa|up_4|NC_014974.1_1580967_1581312_-,NA|175aa|up_3|NC_014974.1_1581308_1581833_-,NA|104aa|up_1|NC_014974.1_1582306_1582618_-,NA|148aa|up_0|NC_014974.1_1582667_1583111_-,NA|172aa|down_8|NC_014974.1_1594216_1594732_-	NA|435aa|up_9|NC_014974.1_1577672_1578977_-	pfam06074, DUF935, Protein of unknown function (DUF935)	NA|238aa|up_8|NC_014974.1_1578973_1579687_-	cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|63aa|up_7|NC_014974.1_1579709_1579898_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|168aa|up_6|NC_014974.1_1580004_1580508_-	NA	NA|163aa|up_5|NC_014974.1_1580482_1580971_-	NA	NA|115aa|up_4|NC_014974.1_1580967_1581312_-	NA	NA|175aa|up_3|NC_014974.1_1581308_1581833_-	NA	NA|165aa|up_2|NC_014974.1_1581810_1582305_-	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|104aa|up_1|NC_014974.1_1582306_1582618_-	NA	NA|148aa|up_0|NC_014974.1_1582667_1583111_-	NA	NA|301aa|down_0|NC_014974.1_1585106_1586009_-	smart00943, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal	NA|151aa|down_1|NC_014974.1_1586201_1586654_-	pfam01381, HTH_3, Helix-turn-helix	NA|253aa|down_2|NC_014974.1_1586793_1587552_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|375aa|down_3|NC_014974.1_1588036_1589161_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|141aa|down_4|NC_014974.1_1589233_1589656_+	COG3255, COG3255, Putative sterol carrier protein [Lipid metabolism]	NA|347aa|down_5|NC_014974.1_1589655_1590696_+	cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2	NA|300aa|down_6|NC_014974.1_1590700_1591600_+	PRK08326, PRK08326, R2-like ligand-binding oxidase	NA|494aa|down_7|NC_014974.1_1591599_1593081_+	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|172aa|down_8|NC_014974.1_1594216_1594732_-	NA	NA|185aa|down_9|NC_014974.1_1594752_1595307_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated
