The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_014921	Mycoplasma fermentans M64, complete sequence	1118751	121409	129654	1118751	tRNA	Acanthamoeba_polyphaga_mimivirus(16.67%)	6	NA	NA
WP_013354365.1|121409_123167_+	molecular chaperone DnaK	NA	A0A0G2YAL1	Acanthamoeba_polyphaga_mimivirus	44.9	2.7e-123
WP_013354366.1|123355_124570_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	36.0	3.3e-64
WP_013526674.1|124571_125534_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	37.0	2.8e-26
WP_013526675.1|125523_126195_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	35.6	1.2e-26
WP_013526676.1|126196_128383_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	41.7	1.8e-15
WP_013354370.1|128391_129654_+	serine hydroxymethyltransferase	NA	A0A240F2Y9	Aeromonas_phage	50.0	3.2e-94
>prophage 2
NC_014921	Mycoplasma fermentans M64, complete sequence	1118751	348401	404866	1118751	tRNA,transposase,integrase	Bacillus_phage(28.57%)	42	377193:377211	395032:395050
WP_013526785.1|348401_349253_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_013354547.1|349255_350098_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_013354548.1|350117_350990_+	riboflavin kinase	NA	NA	NA	NA	NA
WP_013526786.1|351099_352080_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_013526787.1|352165_354709_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	43.3	4.0e-11
WP_013354550.1|354945_355161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013354551.1|355257_355998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013354552.1|356001_356424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013526789.1|356732_358928_+	P80 family lipoprotein	NA	NA	NA	NA	NA
WP_013354554.1|359016_360195_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_013354555.1|360238_362335_+	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	32.7	1.6e-18
WP_013354556.1|362318_363422_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_013354557.1|363336_364320_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_013526791.1|364331_364610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013354558.1|364618_366115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013354559.1|366195_367503_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_013354560.1|367682_368207_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013354561.1|368250_368790_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_013354562.1|368831_370361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013354563.1|370395_373176_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	32.0	1.8e-105
WP_013526792.1|373452_374352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013526793.1|374544_375141_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_013354566.1|375160_375400_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_013354567.1|375586_376609_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_013354568.1|376608_377862_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
377193:377211	attL	AATTAAAGAATTAATGTCA	NA	NA	NA	NA
WP_013354569.1|378030_378450_+	MscL family protein	NA	NA	NA	NA	NA
WP_081439131.1|378562_378670_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_049764032.1|378757_379096_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A1B1P773	Bacillus_phage	37.1	1.5e-11
WP_129622089.1|379174_379318_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_013354570.1|379441_379684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041593976.1|379984_380581_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.6	2.9e-13
WP_013526795.1|380582_380771_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_013354572.1|380815_381166_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_013526797.1|381742_382843_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.1	9.1e-29
WP_013526801.1|387076_388075_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_013354588.1|388373_392210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081451052.1|392697_396033_-	hypothetical protein	NA	NA	NA	NA	NA
395032:395050	attR	TGACATTAATTCTTTAATT	NA	NA	NA	NA
WP_013526804.1|396075_397638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013526805.1|397770_402363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013354585.1|402627_402960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013354584.1|403423_403654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049764027.1|404029_404866_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.0	3.6e-46
>prophage 3
NC_014921	Mycoplasma fermentans M64, complete sequence	1118751	625985	640258	1118751	integrase	Mycoplasma_phage(100.0%)	15	NA	NA
WP_013526930.1|625985_626840_+	repb	NA	O80239	Mycoplasma_phage	35.4	3.6e-33
WP_013526931.1|626848_627010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013526932.1|627002_627164_+	hypothetical protein	NA	A4D0G2	Mycoplasma_phage	98.1	1.5e-17
WP_013526935.1|628099_628414_+	hypothetical protein	NA	Q5QGL9	Mycoplasma_phage	99.0	2.1e-55
WP_013526936.1|628401_630084_+	hypothetical protein	NA	Q5QGL8	Mycoplasma_phage	99.8	0.0e+00
WP_013526937.1|630064_631222_+	hypothetical protein	NA	Q5QGL7	Mycoplasma_phage	100.0	1.8e-221
WP_015510650.1|631223_633071_+	hypothetical protein	NA	Q5QGL6	Mycoplasma_phage	100.0	0.0e+00
WP_013526939.1|633112_633643_+	hypothetical protein	NA	Q5QGL5	Mycoplasma_phage	100.0	1.5e-74
WP_013526940.1|633655_634648_+	hypothetical protein	NA	Q5QGL4	Mycoplasma_phage	100.0	5.3e-185
WP_013526941.1|634650_636066_+	hypothetical protein	NA	Q5QGL3	Mycoplasma_phage	100.0	1.1e-271
WP_013526942.1|636082_637468_+	chaperonin	NA	Q5QGL2	Mycoplasma_phage	100.0	5.7e-262
WP_013526945.1|637761_638409_+	hypothetical protein	NA	Q5QGL0	Mycoplasma_phage	100.0	1.2e-68
WP_013526946.1|638468_639560_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_158304009.1|639610_639778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013526947.1|639796_640258_-	hypothetical protein	NA	Q5QGK8	Mycoplasma_phage	100.0	5.4e-84
>prophage 4
NC_014921	Mycoplasma fermentans M64, complete sequence	1118751	965865	989875	1118751	integrase	Mycoplasma_phage(100.0%)	26	NA	NA
WP_013354958.1|965865_967239_+	M17 family metallopeptidase	NA	Q6GYZ8	Mycoplasma_phage	99.7	4.4e-206
WP_013354959.1|967311_967890_+	thymidine kinase	NA	Q6GYZ9	Mycoplasma_phage	100.0	5.0e-103
WP_013527135.1|967962_968154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129622077.1|968263_968896_-	DUF4143 domain-containing protein	NA	NA	NA	NA	NA
WP_013527137.1|969243_969708_-	restriction endonuclease	NA	A4D0H4	Mycoplasma_phage	98.7	6.7e-82
WP_013527138.1|969994_970456_+	hypothetical protein	NA	Q5QGK8	Mycoplasma_phage	97.4	5.6e-81
WP_158304012.1|970474_970642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013527139.1|970693_971785_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_013526945.1|971844_972492_-	hypothetical protein	NA	Q5QGL0	Mycoplasma_phage	100.0	1.2e-68
WP_013526942.1|972785_974171_-	chaperonin	NA	Q5QGL2	Mycoplasma_phage	100.0	5.7e-262
WP_013526941.1|974187_975603_-	hypothetical protein	NA	Q5QGL3	Mycoplasma_phage	100.0	1.1e-271
WP_013526940.1|975605_976598_-	hypothetical protein	NA	Q5QGL4	Mycoplasma_phage	100.0	5.3e-185
WP_013526939.1|976610_977141_-	hypothetical protein	NA	Q5QGL5	Mycoplasma_phage	100.0	1.5e-74
WP_015510650.1|977182_979030_-	hypothetical protein	NA	Q5QGL6	Mycoplasma_phage	100.0	0.0e+00
WP_013526937.1|979031_980189_-	hypothetical protein	NA	Q5QGL7	Mycoplasma_phage	100.0	1.8e-221
WP_013527140.1|980169_981852_-	hypothetical protein	NA	Q5QGL8	Mycoplasma_phage	100.0	0.0e+00
WP_013527141.1|981839_982154_-	hypothetical protein	NA	Q5QGL9	Mycoplasma_phage	99.0	1.6e-55
WP_013527142.1|982285_983086_-	C-5 cytosine-specific DNA methylase	NA	O80242	Mycoplasma_phage	43.1	1.2e-46
WP_013526932.1|983089_983251_-	hypothetical protein	NA	A4D0G2	Mycoplasma_phage	98.1	1.5e-17
WP_013526931.1|983243_983405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013526930.1|983413_984268_-	repb	NA	O80239	Mycoplasma_phage	35.4	3.6e-33
WP_013527144.1|984753_985194_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_013527145.1|985323_986865_-	spermidine/putrescine ABC transporter substrate-binding protein	NA	Q6GZ00	Mycoplasma_phage	99.6	4.3e-303
WP_013527146.1|986830_987685_-	ABC transporter permease subunit	NA	Q6GZ01	Mycoplasma_phage	99.6	5.4e-154
WP_013527147.1|987699_988518_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	100.0	1.1e-140
WP_013354963.1|988501_989875_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	100.0	2.4e-119
