assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000185245.1_ASM18524v1	NC_017361	Helicobacter pylori SouthAfrica7, complete sequence	1	776949-777086	1	CRISPRCasFinder	no		cas3,cas14j,cas2,DEDDh	Orphan	AAAACACCTAGCCATAAACACCCATTAAAATAATTGCTACTTCATCTTTAA	51	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,cas2,DEDDh	NA|89aa|up_7|NC_017361.1_766315_766582_+,NA|176aa|up_4|NC_017361.1_769598_770126_-,NA	NA|228aa|up_9|NC_017361.1_762871_763555_-	COG1427, COG1427, Predicted periplasmic solute-binding protein [General function prediction only]	NA|853aa|up_8|NC_017361.1_763686_766245_+	TIGR00117, Aconitate_hydratase_2, aconitate hydratase 2	NA|89aa|up_7|NC_017361.1_766315_766582_+	NA	NA|433aa|up_6|NC_017361.1_766831_768130_+	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair]	NA|456aa|up_5|NC_017361.1_768223_769591_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|176aa|up_4|NC_017361.1_769598_770126_-	NA	NA|185aa|up_3|NC_017361.1_770610_771165_-	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|866aa|up_2|NC_017361.1_771311_773909_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|411aa|up_1|NC_017361.1_773898_775131_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|500aa|up_0|NC_017361.1_775410_776910_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|687aa|down_0|NC_017361.1_778152_780213_-	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell	NA|507aa|down_1|NC_017361.1_780236_781757_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_2|NC_017361.1_781762_782287_-	PRK00150, def, peptide deformylase; Reviewed	NA|196aa|down_3|NC_017361.1_782291_782879_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|452aa|down_4|NC_017361.1_782898_784254_-	PRK01490, tig, trigger factor; Provisional	NA|279aa|down_5|NC_017361.1_784366_785203_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|261aa|down_6|NC_017361.1_785224_786007_-	pfam05211, NLBH, Neuraminyllactose-binding hemagglutinin precursor (NLBH)	NA|159aa|down_7|NC_017361.1_786127_786604_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|177aa|down_8|NC_017361.1_786614_787145_-	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional	NA|146aa|down_9|NC_017361.1_787156_787594_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]
GCF_000185245.1_ASM18524v1	NC_017361	Helicobacter pylori SouthAfrica7, complete sequence	2	863297-863388	2	CRISPRCasFinder	no	cas2	cas3,cas14j,cas2,DEDDh	Unclear	TATTTACCCACTCTAGCCAAAAATTTCAA	29	0	0	NA	NA	NA	1	1	Unclear	cas3,cas14j,cas2,DEDDh	NA|292aa|up_9|NC_017361.1_850542_851418_-,NA|49aa|up_4|NC_017361.1_857245_857392_-,NA|612aa|up_2|NC_017361.1_858491_860327_-,NA|127aa|down_6|NC_017361.1_872518_872899_-,NA|177aa|down_8|NC_017361.1_876557_877088_+	NA|292aa|up_9|NC_017361.1_850542_851418_-	NA	NA|506aa|up_8|NC_017361.1_851563_853081_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|792aa|up_7|NC_017361.1_853400_855776_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|158aa|up_6|NC_017361.1_855776_856250_-	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|242aa|up_5|NC_017361.1_856373_857099_+	COG1432, COG1432, Uncharacterized conserved protein [Function unknown]	NA|49aa|up_4|NC_017361.1_857245_857392_-	NA	NA|184aa|up_3|NC_017361.1_857910_858462_-	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|612aa|up_2|NC_017361.1_858491_860327_-	NA	NA|487aa|up_1|NC_017361.1_860420_861881_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|466aa|up_0|NC_017361.1_861881_863279_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|369aa|down_0|NC_017361.1_867620_868727_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|256aa|down_1|NC_017361.1_868799_869567_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_2|NC_017361.1_869566_870547_-	pfam01032, FecCD, FecCD transport family	NA|285aa|down_3|NC_017361.1_870539_871394_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|175aa|down_4|NC_017361.1_871533_872058_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	cas2|95aa|down_5|NC_017361.1_872253_872538_-	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|127aa|down_6|NC_017361.1_872518_872899_-	NA	NA|742aa|down_7|NC_017361.1_873601_875827_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|177aa|down_8|NC_017361.1_876557_877088_+	NA	NA|371aa|down_9|NC_017361.1_877038_878151_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional
GCF_000185245.1_ASM18524v1	NC_017361	Helicobacter pylori SouthAfrica7, complete sequence	3	876022-876104	3	CRISPRCasFinder	no	cas2	cas3,cas14j,cas2,DEDDh	Unclear	TTTTTTAAGGAAACTCATTTTTTAAGG	27	0	0	NA	NA	NA	1	1	Unclear	cas3,cas14j,cas2,DEDDh	NA|127aa|up_1|NC_017361.1_872518_872899_-,NA|177aa|down_0|NC_017361.1_876557_877088_+	NA|487aa|up_9|NC_017361.1_860420_861881_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|466aa|up_8|NC_017361.1_861881_863279_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|369aa|up_7|NC_017361.1_867620_868727_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|256aa|up_6|NC_017361.1_868799_869567_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|up_5|NC_017361.1_869566_870547_-	pfam01032, FecCD, FecCD transport family	NA|285aa|up_4|NC_017361.1_870539_871394_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|175aa|up_3|NC_017361.1_871533_872058_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	cas2|95aa|up_2|NC_017361.1_872253_872538_-	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|127aa|up_1|NC_017361.1_872518_872899_-	NA	NA|742aa|up_0|NC_017361.1_873601_875827_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|177aa|down_0|NC_017361.1_876557_877088_+	NA	NA|371aa|down_1|NC_017361.1_877038_878151_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|79aa|down_2|NC_017361.1_878165_878402_-	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|243aa|down_3|NC_017361.1_878401_879130_-	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB	NA|100aa|down_4|NC_017361.1_879374_879674_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|408aa|down_5|NC_017361.1_879660_880884_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|517aa|down_6|NC_017361.1_880900_882451_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|516aa|down_7|NC_017361.1_882629_884177_+	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|383aa|down_8|NC_017361.1_884227_885376_+	PRK05842, flgD, flagellar hook assembly protein FlgD	NA|606aa|down_9|NC_017361.1_885372_887190_+	PRK05841, flgE, flagellar hook protein FlgE; Validated
GCF_000185245.1_ASM18524v1	NC_017361	Helicobacter pylori SouthAfrica7, complete sequence	4	895449-895518	4	CRISPRCasFinder	no		cas3,cas14j,cas2,DEDDh	Orphan	ATTAAAAACTGCTACTTTAAAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,cas2,DEDDh	NA|194aa|up_4|NC_017361.1_887241_887823_+,NA	NA|408aa|up_9|NC_017361.1_879660_880884_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|517aa|up_8|NC_017361.1_880900_882451_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|516aa|up_7|NC_017361.1_882629_884177_+	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|383aa|up_6|NC_017361.1_884227_885376_+	PRK05842, flgD, flagellar hook assembly protein FlgD	NA|606aa|up_5|NC_017361.1_885372_887190_+	PRK05841, flgE, flagellar hook protein FlgE; Validated	NA|194aa|up_4|NC_017361.1_887241_887823_+	NA	NA|380aa|up_3|NC_017361.1_887832_888972_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|673aa|up_2|NC_017361.1_888981_891000_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|518aa|up_1|NC_017361.1_892156_893710_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|534aa|up_0|NC_017361.1_893731_895333_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|down_0|NC_017361.1_896511_898056_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|814aa|down_1|NC_017361.1_898369_900811_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|144aa|down_2|NC_017361.1_900997_901429_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|down_3|NC_017361.1_901433_904691_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|down_4|NC_017361.1_904789_905482_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|down_5|NC_017361.1_905628_906627_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|2388aa|down_6|NC_017361.1_906706_913870_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|372aa|down_7|NC_017361.1_913919_915035_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_8|NC_017361.1_915094_915301_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_9|NC_017361.1_915416_915998_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR
