assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000185225.1_ASM18522v1	NC_017362	Helicobacter pylori Lithuania75, complete genome	1	122719-122816	1	CRISPRCasFinder	no		cas3,DEDDh	Orphan	CTTTCTTGTTCTAACTCTATCTCACTCTTATTTGC	35	1	1	122754-122781	NC_017362.1_122628-122655	NA	1	1	Orphan	cas3,DEDDh	NA|99aa|up_5|NC_017362.1_113379_113676_+,NA|44aa|down_1|NC_017362.1_125944_126076_+,NA|42aa|down_7|NC_017362.1_130323_130449_+,NA|286aa|down_9|NC_017362.1_131461_132319_+	NA|621aa|up_9|NC_017362.1_109211_111074_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|192aa|up_8|NC_017362.1_111104_111680_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_7|NC_017362.1_111679_112510_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_6|NC_017362.1_112720_113359_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_5|NC_017362.1_113379_113676_+	NA	NA|629aa|up_4|NC_017362.1_113685_115572_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_3|NC_017362.1_115629_117174_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_2|NC_017362.1_117339_119550_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|312aa|up_1|NC_017362.1_119542_120478_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|366aa|up_0|NC_017362.1_120590_121688_-	pfam05917, DUF874, Helicobacter pylori protein of unknown function (DUF874)	NA|813aa|down_0|NC_017362.1_123321_125760_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|44aa|down_1|NC_017362.1_125944_126076_+	NA	NA|613aa|down_2|NC_017362.1_126143_127982_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_3|NC_017362.1_127978_128590_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|down_4|NC_017362.1_128570_128765_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_5|NC_017362.1_128860_129211_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_6|NC_017362.1_129411_130272_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|42aa|down_7|NC_017362.1_130323_130449_+	NA	NA|146aa|down_8|NC_017362.1_130625_131063_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|286aa|down_9|NC_017362.1_131461_132319_+	NA
GCF_000185225.1_ASM18522v1	NC_017362	Helicobacter pylori Lithuania75, complete genome	2	891562-891662	2	CRISPRCasFinder	no		cas3,DEDDh	Orphan	AATTTTACCTTTTTACACATTCTAGCCAAAAATTTCAG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|292aa|up_9|NC_017362.1_877794_878670_-,NA|129aa|up_4|NC_017362.1_885117_885504_-,NA|615aa|up_2|NC_017362.1_886758_888603_-,NA|210aa|down_6|NC_017362.1_904054_904684_+	NA|292aa|up_9|NC_017362.1_877794_878670_-	NA	NA|506aa|up_8|NC_017362.1_878814_880332_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|792aa|up_7|NC_017362.1_880652_883028_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|158aa|up_6|NC_017362.1_883028_883502_-	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|242aa|up_5|NC_017362.1_883633_884359_+	COG1432, COG1432, Uncharacterized conserved protein [Function unknown]	NA|129aa|up_4|NC_017362.1_885117_885504_-	NA	NA|184aa|up_3|NC_017362.1_886181_886733_-	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|615aa|up_2|NC_017362.1_886758_888603_-	NA	NA|487aa|up_1|NC_017362.1_888694_890155_+	pfam03023, MVIN, MviN-like protein	NA|466aa|up_0|NC_017362.1_890155_891553_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|1294aa|down_0|NC_017362.1_891838_895720_+	pfam02691, VacA, Vacuolating cyotoxin	NA|356aa|down_1|NC_017362.1_895839_896907_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|256aa|down_2|NC_017362.1_897022_897790_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_3|NC_017362.1_897789_898770_-	pfam01032, FecCD, FecCD transport family	NA|285aa|down_4|NC_017362.1_898762_899617_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|175aa|down_5|NC_017362.1_899756_900281_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|210aa|down_6|NC_017362.1_904054_904684_+	NA	NA|371aa|down_7|NC_017362.1_904634_905747_-	TIGR00075, Hydrogenase_isoenzymes_formation_protein_HypD, hydrogenase expression/formation protein HypD	NA|79aa|down_8|NC_017362.1_905752_905989_-	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|243aa|down_9|NC_017362.1_905988_906717_-	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB
GCF_000185225.1_ASM18522v1	NC_017362	Helicobacter pylori Lithuania75, complete genome	3	1094915-1095060	3	CRISPRCasFinder	no		cas3,DEDDh	Orphan	CATGCGAGAAGTAATGGTTCAAGAAC	26	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh	NA|512aa|up_8|NC_017362.1_1084557_1086093_+,NA|436aa|down_0|NC_017362.1_1096227_1097535_+,NA|207aa|down_9|NC_017362.1_1106039_1106660_-	NA|345aa|up_9|NC_017362.1_1082807_1083842_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NC_017362.1_1084557_1086093_+	NA	NA|251aa|up_7|NC_017362.1_1086114_1086867_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NC_017362.1_1087066_1087939_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NC_017362.1_1088024_1088651_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NC_017362.1_1088669_1090496_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NC_017362.1_1090561_1091839_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NC_017362.1_1091848_1092532_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NC_017362.1_1092518_1093529_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NC_017362.1_1093689_1094736_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NC_017362.1_1096227_1097535_+	NA	NA|221aa|down_1|NC_017362.1_1097541_1098204_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NC_017362.1_1098495_1099056_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NC_017362.1_1099071_1099464_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NC_017362.1_1099473_1100697_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NC_017362.1_1100709_1101654_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NC_017362.1_1101763_1103086_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NC_017362.1_1103150_1103984_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NC_017362.1_1103994_1105971_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|207aa|down_9|NC_017362.1_1106039_1106660_-	NA
