assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000184185.1_ASM18418v1	NC_017635	Escherichia coli W, complete sequence	1	45373-45504	1	PILER-CR	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|274aa|up_9|NC_017635.1_31564_32386_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_8|NC_017635.1_32841_33990_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_7|NC_017635.1_34007_37229_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_6|NC_017635.1_37489_37885_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|NC_017635.1_37970_38561_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|NC_017635.1_38566_39352_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|NC_017635.1_39460_41014_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|NC_017635.1_41087_42305_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NC_017635.1_42433_43576_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NC_017635.1_43606_45121_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NC_017635.1_45594_46365_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NC_017635.1_46379_47321_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NC_017635.1_47371_48658_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NC_017635.1_48654_48942_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|NC_017635.1_49000_50332_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|NC_017635.1_50439_50970_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|NC_017635.1_50962_52825_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|NC_017635.1_53016_53496_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|281aa|down_8|NC_017635.1_53573_54416_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_9|NC_017635.1_54422_54800_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_000184185.1_ASM18418v1	NC_017635	Escherichia coli W, complete sequence	2	339344-339437	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CGATGTAACAACGCGCACAGATCAGTCCCC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|310aa|up_9|NC_017635.1_332222_333152_-,NA|326aa|down_5|NC_017635.1_344138_345116_+	NA|310aa|up_9|NC_017635.1_332222_333152_-	NA	NA|143aa|up_8|NC_017635.1_333278_333707_-	pfam05130, FlgN, FlgN protein	NA|93aa|up_7|NC_017635.1_333719_333998_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|246aa|up_6|NC_017635.1_334078_334816_-	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|112aa|up_5|NC_017635.1_334897_335233_+	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|144aa|up_4|NC_017635.1_335235_335667_+	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|238aa|up_3|NC_017635.1_335666_336380_+	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|401aa|up_2|NC_017635.1_336464_337667_+	PRK06803, flgE, flagellar basal body protein FlaE	NA|246aa|up_1|NC_017635.1_337666_338404_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|up_0|NC_017635.1_338482_339268_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|222aa|down_0|NC_017635.1_339539_340205_+	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|367aa|down_1|NC_017635.1_340219_341320_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|100aa|down_2|NC_017635.1_341319_341619_+	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|459aa|down_3|NC_017635.1_341801_343178_+	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|310aa|down_4|NC_017635.1_343192_344122_+	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|326aa|down_5|NC_017635.1_344138_345116_+	NA	NA|281aa|down_6|NC_017635.1_345174_346017_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|305aa|down_7|NC_017635.1_346502_347417_+	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|439aa|down_8|NC_017635.1_347623_348940_+	PRK08032, fliD, flagellar capping protein; Reviewed	NA|131aa|down_9|NC_017635.1_348962_349355_+	pfam02561, FliS, Flagellar protein FliS
GCF_000184185.1_ASM18418v1	NC_017635	Escherichia coli W, complete sequence	3	3030421-3031303	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|254aa|up_9|NC_017635.1_3022233_3022995_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_017635.1_3022975_3024025_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_017635.1_3024021_3024501_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_017635.1_3024500_3025211_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_017635.1_3025229_3025541_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_017635.1_3025734_3026058_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_017635.1_3026107_3026713_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_017635.1_3026712_3028140_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_017635.1_3028141_3029050_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_017635.1_3029301_3030339_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_017635.1_3031399_3031693_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_017635.1_3031692_3032613_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_017635.1_3032609_3033260_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_017635.1_3033241_3033988_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_017635.1_3033998_3035054_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NC_017635.1_3035065_3035605_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NC_017635.1_3035601_3037164_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_017635.1_3037261_3039961_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_017635.1_3040155_3040308_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_017635.1_3040572_3041307_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000184185.1_ASM18418v1	NC_017635	Escherichia coli W, complete sequence	4	3057006-3057645	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|47aa|down_1|NC_017635.1_3058794_3058935_+	NA|424aa|up_9|NC_017635.1_3045650_3046922_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_017635.1_3046912_3047173_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_017635.1_3047189_3047765_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NC_017635.1_3047912_3048806_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_017635.1_3048769_3049549_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_017635.1_3049526_3050936_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_017635.1_3050957_3052412_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_017635.1_3052481_3053267_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_017635.1_3053584_3054862_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_017635.1_3054888_3056367_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_017635.1_3057984_3058656_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_017635.1_3058794_3058935_+	NA	NA|291aa|down_2|NC_017635.1_3058948_3059821_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NC_017635.1_3059880_3061179_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NC_017635.1_3061266_3062904_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NC_017635.1_3063131_3063923_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NC_017635.1_3063993_3064329_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NC_017635.1_3064328_3064577_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NC_017635.1_3064654_3066889_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NC_017635.1_3066936_3068238_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
