assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000183155.1_ASM18315v1	NC_014738	Riemerella anatipestifer ATCC 11845 = DSM 15868, complete sequence	1	859687-860657	1,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28,cas13b	Unclear	GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC,GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC	47,47	4	4	860504-860533|860581-860610|860505-860534|860582-860611	NC_014738.1_2129222-2129193|NC_014738.1_1474110-1474139|NC_014738.1_2129222-2129193|NC_014738.1_1474110-1474139	NA:NA	12,12	12	Unclear	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28,cas13b	NA|146aa|up_4|NC_014738.1_851536_851974_-,NA|468aa|up_0|NC_014738.1_858004_859408_+,NA	NA|361aa|up_9|NC_014738.1_844846_845929_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_8|NC_014738.1_846014_846785_-	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|671aa|up_7|NC_014738.1_846808_848821_-	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|223aa|up_6|NC_014738.1_848885_849554_-	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|603aa|up_5|NC_014738.1_849678_851487_-	pfam03772, Competence, Competence protein	NA|146aa|up_4|NC_014738.1_851536_851974_-	NA	NA|543aa|up_3|NC_014738.1_851973_853602_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|398aa|up_2|NC_014738.1_853706_854900_-	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like	NA|936aa|up_1|NC_014738.1_855171_857979_+	cd11308, Peptidase_M14NE-CP-C_like, Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain	NA|468aa|up_0|NC_014738.1_858004_859408_+	NA	cas2|113aa|down_0|NC_014738.1_860764_861103_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|NC_014738.1_861092_861992_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|312aa|down_2|NC_014738.1_866458_867394_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|110aa|down_3|NC_014738.1_867439_867769_-	PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional	NA|351aa|down_4|NC_014738.1_867774_868827_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|256aa|down_5|NC_014738.1_868964_869732_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|167aa|down_6|NC_014738.1_869761_870262_+	pfam10652, DUF2480, Protein of unknown function (DUF2480)	NA|222aa|down_7|NC_014738.1_870309_870975_+	pfam06078, DUF937, Bacterial protein of unknown function (DUF937)	NA|325aa|down_8|NC_014738.1_871126_872101_+	pfam01916, DS, Deoxyhypusine synthase	NA|176aa|down_9|NC_014738.1_872205_872733_+	TIGR04128, hypothetical_protein_HMPREF0204_10576, exosortase family protein XrtF
GCF_000183155.1_ASM18315v1	NC_014738	Riemerella anatipestifer ATCC 11845 = DSM 15868, complete sequence	2	1695512-1696876	2,2,1	CRISPRCasFinder,PILER-CR,CRT	no	WYL,Csx28,cas13b	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28,cas13b	Type VI-B2,Type VI-B1	GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAANTGAGAGCAGTCCCAAC	36,36,36	0	0	NA	NA	VI-B2:VI-B2:VI-B2	17,13,13	17	TypeVI-B2,TypeVI-B1	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28,cas13b	NA|71aa|up_8|NC_014738.1_1682678_1682891_+,NA|229aa|up_2|NC_014738.1_1691474_1692161_+,Csx28|179aa|down_0|NC_014738.1_1697004_1697541_-	WYL|304aa|up_9|NC_014738.1_1676033_1676945_+	pfam13280, WYL, WYL domain	NA|71aa|up_8|NC_014738.1_1682678_1682891_+	NA	NA|706aa|up_7|NC_014738.1_1682877_1684995_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|490aa|up_6|NC_014738.1_1685242_1686712_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|483aa|up_5|NC_014738.1_1686714_1688163_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|427aa|up_4|NC_014738.1_1688327_1689608_-	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|388aa|up_3|NC_014738.1_1689634_1690798_-	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|up_2|NC_014738.1_1691474_1692161_+	NA	NA|443aa|up_1|NC_014738.1_1692188_1693517_+	cd00037, CLECT, C-type lectin (CTL)/C-type lectin-like (CTLD) domain	NA|240aa|up_0|NC_014738.1_1693538_1694258_+	pfam14848, HU-DNA_bdg, DNA-binding domain	Csx28|179aa|down_0|NC_014738.1_1697004_1697541_-	NA	cas13b|1096aa|down_1|NC_014738.1_1697547_1700835_-	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins	NA|350aa|down_2|NC_014738.1_1700966_1702016_-	pfam02685, Glucokinase, Glucokinase	NA|868aa|down_3|NC_014738.1_1702181_1704785_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|456aa|down_4|NC_014738.1_1704880_1706248_-	pfam00639, Rotamase, PPIC-type PPIASE domain	NA|307aa|down_5|NC_014738.1_1706344_1707265_-	cd01946, ribokinase_group_C, Ribokinase-like subgroup C	NA|188aa|down_6|NC_014738.1_1707290_1707854_-	TIGR03512, GldD_lipo, gliding motility-associated lipoprotein GldD	NA|347aa|down_7|NC_014738.1_1707898_1708939_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|126aa|down_8|NC_014738.1_1708901_1709279_+	cd13836, IHF_B, Beta subunit of integration host factor (IHFB)	NA|520aa|down_9|NC_014738.1_1709502_1711062_+	pfam10150, RNase_E_G, Ribonuclease E/G family
GCF_000183155.1_ASM18315v1	NC_014738	Riemerella anatipestifer ATCC 11845 = DSM 15868, complete sequence	3	1831280-1831539	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28,cas13b	Orphan	GGTTCTAGGCTAAGTCGCCTAGGTTCGTT	29	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,Csx28,cas13b	NA|406aa|up_8|NC_014738.1_1819644_1820862_-,NA|546aa|down_4|NC_014738.1_1836312_1837950_+,NA|262aa|down_8|NC_014738.1_1841208_1841994_+	NA|349aa|up_9|NC_014738.1_1818524_1819571_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|406aa|up_8|NC_014738.1_1819644_1820862_-	NA	NA|851aa|up_7|NC_014738.1_1820899_1823452_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|226aa|up_6|NC_014738.1_1823715_1824393_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|341aa|up_5|NC_014738.1_1824400_1825423_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|220aa|up_4|NC_014738.1_1825505_1826165_+	pfam04264, YceI, YceI-like domain	NA|1120aa|up_3|NC_014738.1_1826218_1829578_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|138aa|up_2|NC_014738.1_1829776_1830190_+	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family	NA|191aa|up_1|NC_014738.1_1830186_1830759_+	PRK00150, def, peptide deformylase; Reviewed	NA|141aa|up_0|NC_014738.1_1830786_1831209_+	pfam18347, DUF5606, Domain of unknown function (DUF5606)	NA|258aa|down_0|NC_014738.1_1831748_1832522_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|242aa|down_1|NC_014738.1_1832573_1833299_+	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|605aa|down_2|NC_014738.1_1833378_1835193_+	pfam03993, DUF349, Domain of Unknown Function (DUF349)	NA|340aa|down_3|NC_014738.1_1835287_1836307_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|546aa|down_4|NC_014738.1_1836312_1837950_+	NA	NA|515aa|down_5|NC_014738.1_1837975_1839520_-	NF033449, BREX_PglZ_3, BREX-3 system phosphatase PglZ	NA|292aa|down_6|NC_014738.1_1839669_1840545_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|167aa|down_7|NC_014738.1_1840693_1841194_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|262aa|down_8|NC_014738.1_1841208_1841994_+	NA	NA|229aa|down_9|NC_014738.1_1841988_1842675_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase
