assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	1	226795-226882	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Orphan	GCTGGCTGGTTGTTTGAATACAAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA,NA|79aa|down_0|NC_015660.1_227202_227439_+	NA|409aa|up_9|NC_015660.1_213365_214592_+	PRK08197, PRK08197, threonine synthase; Validated	NA|111aa|up_8|NC_015660.1_215143_215476_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|231aa|up_7|NC_015660.1_215472_216165_+	PRK07668, PRK07668, hypothetical protein; Validated	NA|237aa|up_6|NC_015660.1_216306_217017_+	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|442aa|up_5|NC_015660.1_217580_218906_+	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1	NA|654aa|up_4|NC_015660.1_218919_220881_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|447aa|up_3|NC_015660.1_221344_222685_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|612aa|up_2|NC_015660.1_223115_224951_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|220aa|up_1|NC_015660.1_225060_225720_+	TIGR02840, conserved_hypothetical_protein, putative sporulation protein YtaF	NA|320aa|up_0|NC_015660.1_225829_226789_+	pfam07070, Spo0M, SpoOM protein	NA|79aa|down_0|NC_015660.1_227202_227439_+	NA	NA|434aa|down_1|NC_015660.1_227414_228716_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|410aa|down_2|NC_015660.1_228857_230087_+	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed	NA|395aa|down_3|NC_015660.1_230111_231296_+	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|67aa|down_4|NC_015660.1_231347_231548_+	pfam11755, DUF3311, Protein of unknown function (DUF3311)	NA|491aa|down_5|NC_015660.1_231544_233017_+	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	NA|296aa|down_6|NC_015660.1_233720_234608_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|152aa|down_7|NC_015660.1_234655_235111_+	pfam04892, VanZ, VanZ like family	NA|328aa|down_8|NC_015660.1_235355_236339_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|396aa|down_9|NC_015660.1_236786_237974_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	2	251638-255416	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Orphan	GTTTGTATCTTACCTATGAGGAATTGAAAC,GTTTGTATCTTACCTATGAGGAATTGAAAC,GTTTGTATCTTACCTATGAGGAATTGAAAC	30,30,30	1	1	252343-252378	NC_015660.1_755979-756014	NA:NA:NA	55,56,56	56	Orphan	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA,NA	NA|361aa|up_9|NC_015660.1_237990_239073_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|326aa|up_8|NC_015660.1_239074_240052_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|455aa|up_7|NC_015660.1_240069_241434_+	PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome]	NA|479aa|up_6|NC_015660.1_241626_243063_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|245aa|up_5|NC_015660.1_243087_243822_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|339aa|up_4|NC_015660.1_244063_245080_+	cd06314, PBP1_tmGBP, periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs	NA|517aa|up_3|NC_015660.1_246525_248076_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|433aa|up_2|NC_015660.1_248220_249519_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|324aa|up_1|NC_015660.1_249583_250555_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|274aa|up_0|NC_015660.1_250554_251376_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|466aa|down_0|NC_015660.1_255781_257179_-	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|277aa|down_1|NC_015660.1_257226_258057_-	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold	NA|222aa|down_2|NC_015660.1_258101_258767_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|338aa|down_3|NC_015660.1_258756_259770_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|442aa|down_4|NC_015660.1_259847_261173_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|443aa|down_5|NC_015660.1_261270_262599_-	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|259aa|down_6|NC_015660.1_262629_263406_-	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC	NA|323aa|down_7|NC_015660.1_263434_264403_-	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily	NA|373aa|down_8|NC_015660.1_264468_265587_-	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent	NA|260aa|down_9|NC_015660.1_265697_266477_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	3	681653-681742	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Orphan	CTCTTTTAAATATAAATCCACCGCTTTC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA|256aa|up_3|NC_015660.1_678789_679557_+,NA|109aa|down_0|NC_015660.1_682531_682858_-	NA|510aa|up_9|NC_015660.1_671428_672958_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|247aa|up_8|NC_015660.1_672929_673670_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|412aa|up_7|NC_015660.1_675220_676456_+	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily	NA|235aa|up_6|NC_015660.1_676551_677256_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|122aa|up_5|NC_015660.1_677460_677826_+	pfam07883, Cupin_2, Cupin domain	NA|211aa|up_4|NC_015660.1_677976_678609_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|256aa|up_3|NC_015660.1_678789_679557_+	NA	NA|125aa|up_2|NC_015660.1_679851_680226_+	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|145aa|up_1|NC_015660.1_680399_680834_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|209aa|up_0|NC_015660.1_680789_681416_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|down_0|NC_015660.1_682531_682858_-	NA	NA|202aa|down_1|NC_015660.1_684127_684733_+	pfam06042, NTP_transf_6, Nucleotidyltransferase	NA|94aa|down_2|NC_015660.1_684762_685044_+	TIGR04477, sorted_by_XrtN, XrtN system VIT domain protein	NA|137aa|down_3|NC_015660.1_685473_685884_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|371aa|down_4|NC_015660.1_685992_687105_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|315aa|down_5|NC_015660.1_687285_688230_+	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|215aa|down_6|NC_015660.1_688273_688918_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|283aa|down_7|NC_015660.1_688951_689800_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|302aa|down_8|NC_015660.1_689887_690793_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|224aa|down_9|NC_015660.1_690812_691484_-	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	4	1422853-1422947	4	CRISPRCasFinder	no	DinG	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Type IV-A	TGTTTCCATTATTGCCATTGTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA|195aa|up_0|NC_015660.1_1422035_1422620_+,NA|83aa|down_1|NC_015660.1_1426317_1426566_+,NA|77aa|down_7|NC_015660.1_1429141_1429372_+	NA|283aa|up_9|NC_015660.1_1412892_1413741_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|128aa|up_8|NC_015660.1_1413761_1414145_+	pfam02261, Asp_decarbox, Aspartate decarboxylase	DinG|922aa|up_7|NC_015660.1_1414221_1416987_+	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	NA|57aa|up_6|NC_015660.1_1417265_1417436_+	pfam14084, DUF4264, Protein of unknown function (DUF4264)	NA|179aa|up_5|NC_015660.1_1417389_1417926_+	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown]	NA|397aa|up_4|NC_015660.1_1417947_1419138_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|431aa|up_3|NC_015660.1_1419253_1420546_+	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|236aa|up_2|NC_015660.1_1420613_1421321_+	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair]	NA|217aa|up_1|NC_015660.1_1421372_1422023_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|195aa|up_0|NC_015660.1_1422035_1422620_+	NA	NA|200aa|down_0|NC_015660.1_1425454_1426054_-	PRK02234, recU, Holliday junction-specific endonuclease; Reviewed	NA|83aa|down_1|NC_015660.1_1426317_1426566_+	NA	NA|123aa|down_2|NC_015660.1_1426631_1427000_+	pfam08807, DUF1798, Bacterial domain of unknown function (DUF1798)	NA|66aa|down_3|NC_015660.1_1427137_1427335_-	pfam14178, YppF, YppF-like protein	NA|113aa|down_4|NC_015660.1_1427503_1427842_+	pfam14179, YppG, YppG-like protein	NA|85aa|down_5|NC_015660.1_1427880_1428135_-	pfam17334, CsgA, Sigma-G-dependent sporulation-specific SASP protein	NA|158aa|down_6|NC_015660.1_1428575_1429049_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|77aa|down_7|NC_015660.1_1429141_1429372_+	NA	NA|225aa|down_8|NC_015660.1_1429483_1430158_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|469aa|down_9|NC_015660.1_1430154_1431561_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	5	1497698-1499753	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,csm6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Unclear	GTTTTATCTGAACGTAGTGGGATATAAAG,GTTTTATCTGAACGTAGTGGGATATAAAG,GTTTTATCTGAACGTAGTGGGATATAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	31,31,31	31	Unclear	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA|142aa|up_8|NC_015660.1_1488731_1489157_+,NA	csm6|96aa|up_9|NC_015660.1_1488426_1488714_+	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|142aa|up_8|NC_015660.1_1488731_1489157_+	NA	cas6|243aa|up_7|NC_015660.1_1489409_1490138_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b2|605aa|up_6|NC_015660.1_1490134_1491949_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|296aa|up_5|NC_015660.1_1491945_1492833_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|234aa|up_4|NC_015660.1_1492835_1493537_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|727aa|up_3|NC_015660.1_1493549_1495730_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|166aa|up_2|NC_015660.1_1495743_1496241_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|328aa|up_1|NC_015660.1_1496241_1497225_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NC_015660.1_1497226_1497490_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|87aa|down_0|NC_015660.1_1500023_1500284_+	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|246aa|down_1|NC_015660.1_1500255_1500993_+	cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8	NA|384aa|down_2|NC_015660.1_1501187_1502339_+	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like	NA|490aa|down_3|NC_015660.1_1502362_1503832_+	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|134aa|down_4|NC_015660.1_1504136_1504538_+	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD	NA|442aa|down_5|NC_015660.1_1505130_1506456_+	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)	NA|323aa|down_6|NC_015660.1_1506550_1507519_+	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|118aa|down_7|NC_015660.1_1507536_1507890_+	COG3460, COG3460, Uncharacterized enzyme of phenylacetate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_8|NC_015660.1_1507865_1508708_+	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|165aa|down_9|NC_015660.1_1508739_1509234_+	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	6	1972138-1972898	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no	cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,csm6	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Type III-D, Type III-C?,Type III-A,Type III-B,Type III-C	GTTTTTATCTTACCTATGAGGAATTGAAAC,GTTTCAATTCCTCATAGGTAAGATAAAAAC,GTTTCAATTCCTCATAGGTAAGATAAAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	11,11,11	11	TypeIII-D,TypeIII-C?,TypeIII-A,TypeIII-B,TypeIII-C	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA,NA|86aa|down_7|NC_015660.1_1984549_1984807_+	NA|141aa|up_9|NC_015660.1_1956873_1957296_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|467aa|up_8|NC_015660.1_1957507_1958908_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|247aa|up_7|NC_015660.1_1959154_1959895_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|563aa|up_6|NC_015660.1_1959891_1961580_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|473aa|up_5|NC_015660.1_1961692_1963111_-	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|224aa|up_4|NC_015660.1_1963359_1964031_+	cd04764, HTH_MlrA-like_sg1, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators	NA|122aa|up_3|NC_015660.1_1964070_1964436_-	pfam07238, PilZ, PilZ domain	NA|815aa|up_2|NC_015660.1_1964432_1966877_-	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|657aa|up_1|NC_015660.1_1966876_1968847_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|140aa|up_0|NC_015660.1_1969003_1969423_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	cmr5gr11|136aa|down_0|NC_015660.1_1974227_1974635_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr3gr5|376aa|down_1|NC_015660.1_1975535_1976663_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|549aa|down_2|NC_015660.1_1976659_1978306_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|302aa|down_3|NC_015660.1_1978302_1979208_-	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1	csx1|438aa|down_4|NC_015660.1_1979233_1980547_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	csm6|400aa|down_5|NC_015660.1_1980552_1981752_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|426aa|down_6|NC_015660.1_1982885_1984163_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|86aa|down_7|NC_015660.1_1984549_1984807_+	NA	NA|328aa|down_8|NC_015660.1_1985081_1986065_-	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs	NA|444aa|down_9|NC_015660.1_1986204_1987536_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	7	1982324-1982424	7	CRISPRCasFinder	no	cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,csm6	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Type III-D, Type III-C?,Type III-A,Type III-B,Type III-C	GTTTCAATTCCTTATAGGTTAAGATAAAAAC	31	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-C?,TypeIII-A,TypeIII-B,TypeIII-C	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA,NA|86aa|down_1|NC_015660.1_1984549_1984807_+	NA|122aa|up_9|NC_015660.1_1964070_1964436_-	pfam07238, PilZ, PilZ domain	NA|815aa|up_8|NC_015660.1_1964432_1966877_-	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|657aa|up_7|NC_015660.1_1966876_1968847_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|140aa|up_6|NC_015660.1_1969003_1969423_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	cmr5gr11|136aa|up_5|NC_015660.1_1974227_1974635_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr3gr5|376aa|up_4|NC_015660.1_1975535_1976663_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|549aa|up_3|NC_015660.1_1976659_1978306_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|302aa|up_2|NC_015660.1_1978302_1979208_-	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1	csx1|438aa|up_1|NC_015660.1_1979233_1980547_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	csm6|400aa|up_0|NC_015660.1_1980552_1981752_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|426aa|down_0|NC_015660.1_1982885_1984163_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|86aa|down_1|NC_015660.1_1984549_1984807_+	NA	NA|328aa|down_2|NC_015660.1_1985081_1986065_-	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs	NA|444aa|down_3|NC_015660.1_1986204_1987536_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|486aa|down_4|NC_015660.1_1988055_1989513_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|365aa|down_5|NC_015660.1_1989514_1990609_-	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family	NA|88aa|down_6|NC_015660.1_1991868_1992132_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|68aa|down_7|NC_015660.1_1996355_1996559_-	TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family	NA|390aa|down_8|NC_015660.1_1997613_1998783_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|322aa|down_9|NC_015660.1_1999145_2000111_+	pfam13791, Sigma_reg_C, Sigma factor regulator C-terminal
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	8	1992400-1995183	8,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,csm6	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Type III-D, Type III-C?,Type III-A,Type III-B,Type III-C	GTTTCAATTCCTTATAGGTAAGATAAAAC,GTTTCAATTCCTTATAGGTAAGATAAAAC,GTTTTATCTTACCTATAAGGAATTGAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	42,42,40	42	TypeIII-D,TypeIII-C?,TypeIII-A,TypeIII-B,TypeIII-C	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA|86aa|up_5|NC_015660.1_1984549_1984807_+,NA|215aa|down_3|NC_015660.1_2000288_2000933_+,NA|74aa|down_5|NC_015660.1_2002314_2002536_-,NA|364aa|down_7|NC_015660.1_2004566_2005658_-	cmr1gr7|302aa|up_9|NC_015660.1_1978302_1979208_-	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1	csx1|438aa|up_8|NC_015660.1_1979233_1980547_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	csm6|400aa|up_7|NC_015660.1_1980552_1981752_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|426aa|up_6|NC_015660.1_1982885_1984163_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|86aa|up_5|NC_015660.1_1984549_1984807_+	NA	NA|328aa|up_4|NC_015660.1_1985081_1986065_-	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs	NA|444aa|up_3|NC_015660.1_1986204_1987536_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|486aa|up_2|NC_015660.1_1988055_1989513_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|365aa|up_1|NC_015660.1_1989514_1990609_-	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family	NA|88aa|up_0|NC_015660.1_1991868_1992132_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|68aa|down_0|NC_015660.1_1996355_1996559_-	TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family	NA|390aa|down_1|NC_015660.1_1997613_1998783_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|322aa|down_2|NC_015660.1_1999145_2000111_+	pfam13791, Sigma_reg_C, Sigma factor regulator C-terminal	NA|215aa|down_3|NC_015660.1_2000288_2000933_+	NA	NA|214aa|down_4|NC_015660.1_2001482_2002124_+	pfam09997, DUF2238, Predicted membrane protein (DUF2238)	NA|74aa|down_5|NC_015660.1_2002314_2002536_-	NA	NA|475aa|down_6|NC_015660.1_2003145_2004570_-	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|364aa|down_7|NC_015660.1_2004566_2005658_-	NA	NA|406aa|down_8|NC_015660.1_2005638_2006856_-	cd03822, GT4_mannosyltransferase-like, mannosyltransferases of glycosyltransferase family 4 and similar proteins	NA|348aa|down_9|NC_015660.1_2006852_2007896_-	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	9	2439363-2439467	9	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Orphan	CTCTTAACGAGGTCATCTTAAAAAAAGAATAT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA|107aa|up_5|NC_015660.1_2433513_2433834_-,NA|96aa|up_1|NC_015660.1_2438647_2438935_+,NA|74aa|up_0|NC_015660.1_2439099_2439321_-,NA|74aa|down_0|NC_015660.1_2439828_2440050_+,NA|105aa|down_3|NC_015660.1_2443804_2444119_+,NA|56aa|down_4|NC_015660.1_2444506_2444674_+	NA|443aa|up_9|NC_015660.1_2430027_2431356_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|223aa|up_8|NC_015660.1_2431348_2432017_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|183aa|up_7|NC_015660.1_2432023_2432572_-	COG2717, COG2717, Predicted membrane protein [Function unknown]	NA|312aa|up_6|NC_015660.1_2432574_2433510_-	pfam02424, ApbE, ApbE family	NA|107aa|up_5|NC_015660.1_2433513_2433834_-	NA	NA|218aa|up_4|NC_015660.1_2433849_2434503_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|331aa|up_3|NC_015660.1_2434873_2435866_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases	NA|435aa|up_2|NC_015660.1_2437068_2438373_+	pfam03069, FmdA_AmdA, Acetamidase/Formamidase family	NA|96aa|up_1|NC_015660.1_2438647_2438935_+	NA	NA|74aa|up_0|NC_015660.1_2439099_2439321_-	NA	NA|74aa|down_0|NC_015660.1_2439828_2440050_+	NA	NA|451aa|down_1|NC_015660.1_2440134_2441487_-	PRK07678, PRK07678, aminotransferase; Validated	NA|489aa|down_2|NC_015660.1_2441575_2443042_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|105aa|down_3|NC_015660.1_2443804_2444119_+	NA	NA|56aa|down_4|NC_015660.1_2444506_2444674_+	NA	NA|297aa|down_5|NC_015660.1_2445373_2446264_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|537aa|down_6|NC_015660.1_2449539_2451150_-	pfam07905, PucR, Purine catabolism regulatory protein-like family	NA|78aa|down_7|NC_015660.1_2451750_2451984_-	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|473aa|down_8|NC_015660.1_2452286_2453705_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|428aa|down_9|NC_015660.1_2453736_2455020_-	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	10	3094199-3094298	10	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Orphan	AAATGAGGTGTTTGTCAAAGACA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA|467aa|up_3|NC_015660.1_3090010_3091411_-,NA|30aa|down_2|NC_015660.1_3096016_3096106_+,NA|60aa|down_3|NC_015660.1_3096175_3096355_-	NA|46aa|up_9|NC_015660.1_3082860_3082998_+	pfam14149, YhfH, YhfH-like protein	NA|801aa|up_8|NC_015660.1_3083125_3085528_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|191aa|up_7|NC_015660.1_3085596_3086169_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|479aa|up_6|NC_015660.1_3086254_3087691_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|312aa|up_5|NC_015660.1_3087706_3088642_-	PRK12435, PRK12435, ferrochelatase; Provisional	NA|346aa|up_4|NC_015660.1_3088655_3089693_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|467aa|up_3|NC_015660.1_3090010_3091411_-	NA	NA|168aa|up_2|NC_015660.1_3091583_3092087_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|399aa|up_1|NC_015660.1_3092099_3093296_-	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|246aa|up_0|NC_015660.1_3093292_3094030_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|141aa|down_0|NC_015660.1_3094524_3094947_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|279aa|down_1|NC_015660.1_3094988_3095825_-	PRK03095, prsA, peptidylprolyl isomerase PrsA	NA|30aa|down_2|NC_015660.1_3096016_3096106_+	NA	NA|60aa|down_3|NC_015660.1_3096175_3096355_-	NA	NA|114aa|down_4|NC_015660.1_3096553_3096895_+	pfam08963, DUF1878, Protein of unknown function (DUF1878)	NA|206aa|down_5|NC_015660.1_3096887_3097505_-	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr	NA|175aa|down_6|NC_015660.1_3097901_3098426_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|361aa|down_7|NC_015660.1_3098537_3099620_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|62aa|down_8|NC_015660.1_3099728_3099914_-	pfam14147, Spore_YhaL, Sporulation protein YhaL	NA|328aa|down_9|NC_015660.1_3100093_3101077_-	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional
GCF_000178395.2_ASM17839v2	NC_015660	Parageobacillus thermoglucosidasius C56-YS93, complete sequence	11	3459790-3464595	11,5,5,6	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas6,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1	Type I-B	GTTTCAATTCCTCATAGGTAAGATACAAAC,GTTTCAATTCCTCATAGGTAAGATACAAAC,GTTTGTATCTTACCTATGAGGAATTGAAAC,GTTTGTATCTTACCTATGAGGAATTGAAAC	30,30,30,30	6	6	3461187-3461224|3461594-3461629|3462990-3463027|3463724-3463758|3463861-3463897|3463996-3464031	NC_015660.1_747860-747897|NC_015660.1_757305-757270|NC_015660.1_741477-741440|NC_015660.1_773386-773420|NC_015660.1_772703-772667|NC_015660.1_772047-772012	NA:NA:NA:NA	71,71,67,67	71	TypeI-B	cas3,DEDDh,csa3,DinG,cas6,csm6,cas8b2,cas7,cas5,cas4,cas1,cas2,cmr5gr11,cmr3gr5,cas10,cmr1gr7,csx1,WYL,cas7b,cas8b1,Cas14u_CAS-V	NA,NA	NA|426aa|up_9|NC_015660.1_3446500_3447778_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|369aa|up_8|NC_015660.1_3447846_3448953_-	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|358aa|up_7|NC_015660.1_3448976_3450050_-	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|269aa|up_6|NC_015660.1_3450046_3450853_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|264aa|up_5|NC_015660.1_3450863_3451655_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|358aa|up_4|NC_015660.1_3451644_3452718_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|258aa|up_3|NC_015660.1_3453077_3453851_-	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1	NA|695aa|up_2|NC_015660.1_3455435_3457520_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|226aa|up_1|NC_015660.1_3457802_3458480_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|300aa|up_0|NC_015660.1_3458682_3459582_-	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	cas6|249aa|down_0|NC_015660.1_3464777_3465524_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas2|88aa|down_1|NC_015660.1_3465798_3466062_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|336aa|down_2|NC_015660.1_3466071_3467079_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|166aa|down_3|NC_015660.1_3467081_3467579_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|828aa|down_4|NC_015660.1_3467578_3470062_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|245aa|down_5|NC_015660.1_3470106_3470841_-	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7b|312aa|down_6|NC_015660.1_3470855_3471791_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|657aa|down_7|NC_015660.1_3471953_3473924_-	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	NA|252aa|down_8|NC_015660.1_3474421_3475177_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|426aa|down_9|NC_015660.1_3476101_3477379_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily
