assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000176115.2_ASM17611v2	NC_016110	Streptomyces pratensis ATCC 33331 plasmid pSFLA01, complete sequence	1	44664-45059	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGGACCATCCCCGCGGGCGCGGGGAGCACG,TCCCCGCGGGCGCGGGGAGCAC,GGGACCATCCCCGCGGGCGCGGGGA---GCAC	30,22,32	0	0	NA	NA	I-E:NA	6,6,5	6	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|117aa|up_8|NC_016110.1_36934_37285_-,NA|111aa|up_0|NC_016110.1_44214_44547_-,NA|174aa|down_0|NC_016110.1_45280_45802_-,NA|159aa|down_1|NC_016110.1_45993_46470_-,NA|450aa|down_3|NC_016110.1_47148_48498_+,NA|442aa|down_4|NC_016110.1_49000_50326_+,NA|94aa|down_5|NC_016110.1_50524_50806_-,NA|143aa|down_7|NC_016110.1_52988_53417_-	NA|343aa|up_9|NC_016110.1_35892_36921_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|117aa|up_8|NC_016110.1_36934_37285_-	NA	NA|167aa|up_7|NC_016110.1_37298_37799_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|180aa|up_6|NC_016110.1_38502_39042_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|420aa|up_5|NC_016110.1_39026_40286_-	pfam01381, HTH_3, Helix-turn-helix	NA|267aa|up_4|NC_016110.1_40639_41440_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|514aa|up_3|NC_016110.1_41452_42994_+	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion]	NA|212aa|up_2|NC_016110.1_43008_43644_+	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|149aa|up_1|NC_016110.1_43640_44087_+	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|111aa|up_0|NC_016110.1_44214_44547_-	NA	NA|174aa|down_0|NC_016110.1_45280_45802_-	NA	NA|159aa|down_1|NC_016110.1_45993_46470_-	NA	NA|183aa|down_2|NC_016110.1_46466_47015_-	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|450aa|down_3|NC_016110.1_47148_48498_+	NA	NA|442aa|down_4|NC_016110.1_49000_50326_+	NA	NA|94aa|down_5|NC_016110.1_50524_50806_-	NA	NA|284aa|down_6|NC_016110.1_51073_51925_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|143aa|down_7|NC_016110.1_52988_53417_-	NA	NA|570aa|down_8|NC_016110.1_53499_55209_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|197aa|down_9|NC_016110.1_55380_55971_-	pfam15589, Imm21, Immunity protein 21
GCF_000176115.2_ASM17611v2	NC_016110	Streptomyces pratensis ATCC 33331 plasmid pSFLA01, complete sequence	2	52111-52875	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGGACCATCCCCGCGGGCGCGGGGAGCAC,GGGACCATCCCCGCGGGCGCGGGGAGCAC,GGGACCATCCCCGCGGGCGCGGGGA---GCAC	29,29,32	1	1	52754-52785	NC_016114.1_2431837-2431806	N:A	12,11,10	12	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|111aa|up_7|NC_016110.1_44214_44547_-,NA|174aa|up_6|NC_016110.1_45280_45802_-,NA|159aa|up_5|NC_016110.1_45993_46470_-,NA|450aa|up_3|NC_016110.1_47148_48498_+,NA|442aa|up_2|NC_016110.1_49000_50326_+,NA|94aa|up_1|NC_016110.1_50524_50806_-,NA|143aa|down_0|NC_016110.1_52988_53417_-,NA|162aa|down_6|NC_016110.1_61054_61540_-,NA|116aa|down_7|NC_016110.1_61850_62198_-	NA|212aa|up_9|NC_016110.1_43008_43644_+	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|149aa|up_8|NC_016110.1_43640_44087_+	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|111aa|up_7|NC_016110.1_44214_44547_-	NA	NA|174aa|up_6|NC_016110.1_45280_45802_-	NA	NA|159aa|up_5|NC_016110.1_45993_46470_-	NA	NA|183aa|up_4|NC_016110.1_46466_47015_-	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|450aa|up_3|NC_016110.1_47148_48498_+	NA	NA|442aa|up_2|NC_016110.1_49000_50326_+	NA	NA|94aa|up_1|NC_016110.1_50524_50806_-	NA	NA|284aa|up_0|NC_016110.1_51073_51925_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|143aa|down_0|NC_016110.1_52988_53417_-	NA	NA|570aa|down_1|NC_016110.1_53499_55209_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|197aa|down_2|NC_016110.1_55380_55971_-	pfam15589, Imm21, Immunity protein 21	NA|513aa|down_3|NC_016110.1_56117_57656_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|508aa|down_4|NC_016110.1_57664_59188_-	pfam12666, PrgI, PrgI family protein	NA|568aa|down_5|NC_016110.1_59184_60888_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|162aa|down_6|NC_016110.1_61054_61540_-	NA	NA|116aa|down_7|NC_016110.1_61850_62198_-	NA	NA|300aa|down_8|NC_016110.1_62213_63113_-	cd02037, Mrp_NBP35, Mrp/NBP35 ATP-binding protein family	NA|351aa|down_9|NC_016110.1_63397_64450_+	cd13399, Slt35-like, Slt35-like lytic transglycosylase
GCF_000176115.2_ASM17611v2	NC_016110	Streptomyces pratensis ATCC 33331 plasmid pSFLA01, complete sequence	3	133924-134626	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GGGGCCATCCCCGCGTGCGCGGGGAGCAG,GGGGCCATCCCCGCGTGCGCGGGGAGCAG,GGGCCATCCCCGCGTGCGCGGGGA---GCAG	29,29,31	0	0	NA	NA	N:A	11,11,6	11	TypeI-E	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|320aa|up_6|NC_016110.1_123460_124420_+,NA|54aa|up_4|NC_016110.1_125612_125774_+,NA|234aa|up_0|NC_016110.1_132551_133253_-,NA|259aa|down_8|NC_016110.1_145373_146150_+	NA|386aa|up_9|NC_016110.1_120485_121643_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|417aa|up_8|NC_016110.1_121639_122890_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|114aa|up_7|NC_016110.1_123122_123464_+	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family	NA|320aa|up_6|NC_016110.1_123460_124420_+	NA	NA|305aa|up_5|NC_016110.1_124513_125428_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|54aa|up_4|NC_016110.1_125612_125774_+	NA	NA|498aa|up_3|NC_016110.1_126140_127634_-	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	NA|337aa|up_2|NC_016110.1_128111_129122_-	COG4257, Vgb, Streptogramin lyase [Defense mechanisms]	NA|1140aa|up_1|NC_016110.1_129135_132555_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|234aa|up_0|NC_016110.1_132551_133253_-	NA	cas3|964aa|down_0|NC_016110.1_134890_137782_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|565aa|down_1|NC_016110.1_137774_139469_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|233aa|down_2|NC_016110.1_139465_140164_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|398aa|down_3|NC_016110.1_140160_141354_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|down_4|NC_016110.1_141350_142076_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|259aa|down_5|NC_016110.1_142075_142852_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|326aa|down_6|NC_016110.1_142856_143834_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|117aa|down_7|NC_016110.1_143830_144181_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|259aa|down_8|NC_016110.1_145373_146150_+	NA	NA|339aa|down_9|NC_016110.1_147648_148665_+	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal
GCF_000176115.2_ASM17611v2	NC_016110	Streptomyces pratensis ATCC 33331 plasmid pSFLA01, complete sequence	4	144274-145340	4,4,4,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGC--TCCCCGCGCGTGCGGGGATGGTCCC,GTGCTCCCCGCGCGTGCGGGGATGGTCCC,GTGCTCCCCGCGCGTGCGGGGATGGTCCC,GTGC--TCCCCGCGCGTGCGGGGATGGTCCC	31,29,29,31	0	0	NA	NA	N:A	10,17,17,10	17	TypeI-E	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|234aa|up_8|NC_016110.1_132551_133253_-,NA|259aa|down_0|NC_016110.1_145373_146150_+,NA|127aa|down_3|NC_016110.1_150345_150726_+,NA|68aa|down_5|NC_016110.1_152715_152919_-,NA|109aa|down_6|NC_016110.1_152992_153319_-,NA|221aa|down_9|NC_016110.1_156839_157502_-	NA|1140aa|up_9|NC_016110.1_129135_132555_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|234aa|up_8|NC_016110.1_132551_133253_-	NA	cas3|964aa|up_7|NC_016110.1_134890_137782_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|565aa|up_6|NC_016110.1_137774_139469_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|233aa|up_5|NC_016110.1_139465_140164_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|398aa|up_4|NC_016110.1_140160_141354_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NC_016110.1_141350_142076_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|259aa|up_2|NC_016110.1_142075_142852_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|326aa|up_1|NC_016110.1_142856_143834_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|117aa|up_0|NC_016110.1_143830_144181_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|259aa|down_0|NC_016110.1_145373_146150_+	NA	NA|339aa|down_1|NC_016110.1_147648_148665_+	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal	NA|516aa|down_2|NC_016110.1_148661_150209_+	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	NA|127aa|down_3|NC_016110.1_150345_150726_+	NA	NA|77aa|down_4|NC_016110.1_151023_151254_+	pfam12120, Arr-ms, Rifampin ADP-ribosyl transferase	NA|68aa|down_5|NC_016110.1_152715_152919_-	NA	NA|109aa|down_6|NC_016110.1_152992_153319_-	NA	NA|412aa|down_7|NC_016110.1_153965_155201_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|216aa|down_8|NC_016110.1_156156_156804_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|221aa|down_9|NC_016110.1_156839_157502_-	NA
GCF_000176115.2_ASM17611v2	NC_016114	Streptomyces pratensis ATCC 33331, complete sequence	1	2014218-2014409	1	CRT	no		csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4	Orphan	GGGACCNCCGGGACGGCC	18	1	1	2014332-2014349	NC_016114.1_3398474-3398457	N:A	4	4	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|175aa|down_3|NC_016114.1_2017726_2018251_+	NA|364aa|up_9|NC_016114.1_2000453_2001545_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|307aa|up_8|NC_016114.1_2001541_2002462_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|354aa|up_7|NC_016114.1_2002458_2003520_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|334aa|up_6|NC_016114.1_2003516_2004518_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|369aa|up_5|NC_016114.1_2004514_2005621_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|318aa|up_4|NC_016114.1_2005697_2006651_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|1182aa|up_3|NC_016114.1_2006694_2010240_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|302aa|up_2|NC_016114.1_2010470_2011376_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|154aa|up_1|NC_016114.1_2011372_2011834_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|99aa|up_0|NC_016114.1_2011860_2012157_-	pfam04456, DUF503, Protein of unknown function (DUF503)	NA|93aa|down_0|NC_016114.1_2015583_2015862_-	pfam04296, DUF448, Protein of unknown function (DUF448)	NA|347aa|down_1|NC_016114.1_2016014_2017055_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|166aa|down_2|NC_016114.1_2017057_2017555_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|175aa|down_3|NC_016114.1_2017726_2018251_+	NA	NA|165aa|down_4|NC_016114.1_2018247_2018742_+	pfam14530, DUF4439, Domain of unknown function (DUF4439)	NA|305aa|down_5|NC_016114.1_2018785_2019700_+	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA|566aa|down_6|NC_016114.1_2019754_2021452_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|193aa|down_7|NC_016114.1_2021557_2022136_-	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|282aa|down_8|NC_016114.1_2022165_2023011_-	pfam13312, DUF4081, Domain of unknown function (DUF4081)	NA|386aa|down_9|NC_016114.1_2023170_2024328_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
GCF_000176115.2_ASM17611v2	NC_016114	Streptomyces pratensis ATCC 33331, complete sequence	2	2138512-2138606	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4	Orphan	ATGCCGCAGGACCAGGGCTTCGG	23	0	0	NA	NA	N:A	1	1	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|68aa|up_9|NC_016114.1_2126438_2126642_+,NA|76aa|up_7|NC_016114.1_2127522_2127750_-,NA|61aa|up_0|NC_016114.1_2134716_2134899_-,NA	NA|68aa|up_9|NC_016114.1_2126438_2126642_+	NA	NA|219aa|up_8|NC_016114.1_2126723_2127380_-	cd13836, IHF_B, Beta subunit of integration host factor (IHFB)	NA|76aa|up_7|NC_016114.1_2127522_2127750_-	NA	NA|198aa|up_6|NC_016114.1_2127854_2128448_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|475aa|up_5|NC_016114.1_2128453_2129878_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|239aa|up_4|NC_016114.1_2130051_2130768_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|240aa|up_3|NC_016114.1_2131525_2132245_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|491aa|up_2|NC_016114.1_2132348_2133821_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|259aa|up_1|NC_016114.1_2133813_2134590_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|61aa|up_0|NC_016114.1_2134716_2134899_-	NA	NA|138aa|down_0|NC_016114.1_2139240_2139654_+	pfam03259, Robl_LC7, Roadblock/LC7 domain	NA|136aa|down_1|NC_016114.1_2139788_2140196_+	pfam05331, DUF742, Protein of unknown function (DUF742)	NA|194aa|down_2|NC_016114.1_2140176_2140758_+	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|1070aa|down_3|NC_016114.1_2141107_2144317_+	pfam08376, NIT, Nitrate and nitrite sensing	NA|138aa|down_4|NC_016114.1_2144327_2144741_+	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|225aa|down_5|NC_016114.1_2144830_2145505_+	pfam05331, DUF742, Protein of unknown function (DUF742)	NA|194aa|down_6|NC_016114.1_2145485_2146067_+	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|68aa|down_7|NC_016114.1_2146159_2146363_-	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit	NA|528aa|down_8|NC_016114.1_2146436_2148020_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|407aa|down_9|NC_016114.1_2148626_2149847_+	cd09220, GH64-GluB-like, glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like
GCF_000176115.2_ASM17611v2	NC_016114	Streptomyces pratensis ATCC 33331, complete sequence	3	2543791-2543869	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4	Orphan	CGTCGTCGTACGGCGGCTCGTCGTGCGG	28	1	1	2543819-2543841	NC_016114.1_5545069-5545091	N:A	1	1	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|68aa|up_8|NC_016114.1_2535127_2535331_-,NA|113aa|up_7|NC_016114.1_2535472_2535811_-,NA|110aa|up_5|NC_016114.1_2536368_2536698_-,NA|345aa|down_8|NC_016114.1_2560223_2561258_-	NA|481aa|up_9|NC_016114.1_2533656_2535099_+	cd13970, ABC1_ADCK3, Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3	NA|68aa|up_8|NC_016114.1_2535127_2535331_-	NA	NA|113aa|up_7|NC_016114.1_2535472_2535811_-	NA	NA|123aa|up_6|NC_016114.1_2535828_2536197_-	pfam02467, Whib, Transcription factor WhiB	NA|110aa|up_5|NC_016114.1_2536368_2536698_-	NA	NA|741aa|up_4|NC_016114.1_2536865_2539088_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|81aa|up_3|NC_016114.1_2539337_2539580_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|271aa|up_2|NC_016114.1_2539677_2540490_+	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|316aa|up_1|NC_016114.1_2540599_2541547_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	NA|465aa|up_0|NC_016114.1_2541591_2542986_-	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|1157aa|down_0|NC_016114.1_2546551_2550022_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|137aa|down_1|NC_016114.1_2550315_2550726_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|915aa|down_2|NC_016114.1_2550942_2553687_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|532aa|down_3|NC_016114.1_2553763_2555359_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|513aa|down_4|NC_016114.1_2555438_2556977_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|393aa|down_5|NC_016114.1_2557045_2558224_-	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated	NA|276aa|down_6|NC_016114.1_2558308_2559136_-	pfam12138, Spherulin4, Spherulation-specific family 4	NA|322aa|down_7|NC_016114.1_2559123_2560089_-	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family	NA|345aa|down_8|NC_016114.1_2560223_2561258_-	NA	NA|595aa|down_9|NC_016114.1_2561454_2563239_-	cd03813, GT4-like, glycosyltransferase family 4 proteins
GCF_000176115.2_ASM17611v2	NC_016114	Streptomyces pratensis ATCC 33331, complete sequence	4	2588279-2588357	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4	Orphan	ACCCGTCGCCCGCCACCACCCTTCC	25	0	0	NA	NA	N:A	1	1	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|51aa|up_9|NC_016114.1_2578759_2578912_+,NA|215aa|up_6|NC_016114.1_2580734_2581379_-,NA|173aa|up_2|NC_016114.1_2584933_2585452_+,NA|251aa|up_1|NC_016114.1_2585489_2586242_-,NA|222aa|down_1|NC_016114.1_2589585_2590251_-	NA|51aa|up_9|NC_016114.1_2578759_2578912_+	NA	NA|202aa|up_8|NC_016114.1_2579023_2579629_-	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion]	NA|289aa|up_7|NC_016114.1_2579770_2580637_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|215aa|up_6|NC_016114.1_2580734_2581379_-	NA	NA|411aa|up_5|NC_016114.1_2581537_2582770_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|195aa|up_4|NC_016114.1_2582808_2583393_-	pfam05076, SUFU, Suppressor of fused protein (SUFU)	NA|372aa|up_3|NC_016114.1_2583805_2584921_+	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|173aa|up_2|NC_016114.1_2584933_2585452_+	NA	NA|251aa|up_1|NC_016114.1_2585489_2586242_-	NA	NA|425aa|up_0|NC_016114.1_2586414_2587689_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|378aa|down_0|NC_016114.1_2588390_2589524_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|222aa|down_1|NC_016114.1_2589585_2590251_-	NA	NA|163aa|down_2|NC_016114.1_2590377_2590866_-	PRK01371, PRK01371, Sec-independent protein translocase protein TatB	NA|600aa|down_3|NC_016114.1_2590983_2592783_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|309aa|down_4|NC_016114.1_2592872_2593799_-	pfam13490, zf-HC2, Putative zinc-finger	NA|216aa|down_5|NC_016114.1_2593795_2594443_-	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed	NA|222aa|down_6|NC_016114.1_2594733_2595399_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|56aa|down_7|NC_016114.1_2595522_2595690_-	pfam11314, DUF3117, Protein of unknown function (DUF3117)	NA|274aa|down_8|NC_016114.1_2596006_2596828_+	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|195aa|down_9|NC_016114.1_2596834_2597419_-	pfam03352, Adenine_glyco, Methyladenine glycosylase
GCF_000176115.2_ASM17611v2	NC_016114	Streptomyces pratensis ATCC 33331, complete sequence	5	3471661-3471805	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4	Orphan	CGGTCGTTGCTGCCGCGGTAGCCGC	25	0	0	NA	NA	N:A	2	2	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|124aa|up_8|NC_016114.1_3458271_3458643_+,NA|77aa|up_5|NC_016114.1_3463566_3463797_-,NA|410aa|up_2|NC_016114.1_3466135_3467365_+,NA|190aa|up_1|NC_016114.1_3468490_3469060_-,NA	NA|196aa|up_9|NC_016114.1_3457667_3458255_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|124aa|up_8|NC_016114.1_3458271_3458643_+	NA	NA|577aa|up_7|NC_016114.1_3458861_3460592_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|438aa|up_6|NC_016114.1_3462019_3463333_-	pfam12307, DUF3631, Protein of unknown function (DUF3631)	NA|77aa|up_5|NC_016114.1_3463566_3463797_-	NA	NA|222aa|up_4|NC_016114.1_3463906_3464572_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|514aa|up_3|NC_016114.1_3464568_3466110_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|410aa|up_2|NC_016114.1_3466135_3467365_+	NA	NA|190aa|up_1|NC_016114.1_3468490_3469060_-	NA	NA|513aa|up_0|NC_016114.1_3469519_3471058_-	TIGR00907, Choline_transport_protein, amino acid permease (GABA permease)	NA|186aa|down_0|NC_016114.1_3473589_3474147_-	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|123aa|down_1|NC_016114.1_3474282_3474651_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|166aa|down_2|NC_016114.1_3474647_3475145_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|118aa|down_3|NC_016114.1_3475141_3475495_-	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|512aa|down_4|NC_016114.1_3475619_3477155_+	pfam00149, Metallophos, Calcineurin-like phosphoesterase	NA|281aa|down_5|NC_016114.1_3477631_3478474_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|264aa|down_6|NC_016114.1_3478470_3479262_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|1316aa|down_7|NC_016114.1_3479442_3483390_+	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|124aa|down_8|NC_016114.1_3483727_3484099_+	PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional	NA|69aa|down_9|NC_016114.1_3484634_3484841_-	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins
GCF_000176115.2_ASM17611v2	NC_016114	Streptomyces pratensis ATCC 33331, complete sequence	6	4540766-4541179	2	CRT	no		csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4	Orphan	TACTGACGGTGGNACCGA	18	4	4	4540892-4540909|4540976-4540993|4541096-4541113|4541132-4541161	NC_016114.1_4116190-4116207|NC_016114.1_4116190-4116207|NC_016114.1_4116190-4116207|NC_016114.1_4541156-4541185	N:A	9	9	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|64aa|down_0|NC_016114.1_4541555_4541747_-	NA|949aa|up_9|NC_016114.1_4521834_4524681_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|383aa|up_8|NC_016114.1_4524677_4525826_+	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|745aa|up_7|NC_016114.1_4525877_4528112_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|305aa|up_6|NC_016114.1_4528305_4529220_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|462aa|up_5|NC_016114.1_4529216_4530602_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|444aa|up_4|NC_016114.1_4530606_4531938_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|1111aa|up_3|NC_016114.1_4532238_4535571_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|541aa|up_2|NC_016114.1_4535992_4537615_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|413aa|up_1|NC_016114.1_4537762_4539001_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|369aa|up_0|NC_016114.1_4539071_4540178_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|64aa|down_0|NC_016114.1_4541555_4541747_-	NA	NA|230aa|down_1|NC_016114.1_4542005_4542695_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|307aa|down_2|NC_016114.1_4542765_4543686_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|396aa|down_3|NC_016114.1_4543754_4544942_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|163aa|down_4|NC_016114.1_4544960_4545449_+	pfam01668, SmpB, SmpB protein	NA|402aa|down_5|NC_016114.1_4546030_4547236_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|324aa|down_6|NC_016114.1_4547320_4548292_+	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|221aa|down_7|NC_016114.1_4548460_4549123_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|731aa|down_8|NC_016114.1_4549123_4551316_+	cd10962, CE4_GT2-like, Catalytic NodB homology domain of uncharacterized bacterial glycosyl transferase, group 2-like family proteins	NA|431aa|down_9|NC_016114.1_4551312_4552605_+	pfam01757, Acyl_transf_3, Acyltransferase family
GCF_000176115.2_ASM17611v2	NC_016114	Streptomyces pratensis ATCC 33331, complete sequence	7	6805648-6805739	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4	Orphan	CCACCGTCGTGGGCGCCGGGGGT	23	0	0	NA	NA	N:A	1	1	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|55aa|up_8|NC_016114.1_6796915_6797080_+,NA|118aa|down_2|NC_016114.1_6807934_6808288_-	NA|615aa|up_9|NC_016114.1_6795074_6796919_+	cd01150, AXO, Peroxisomal acyl-CoA oxidase	NA|55aa|up_8|NC_016114.1_6796915_6797080_+	NA	NA|349aa|up_7|NC_016114.1_6797418_6798465_+	cd01148, TroA_a, Metal binding protein TroA_a	NA|362aa|up_6|NC_016114.1_6798461_6799547_+	TIGR03869, transport_system_permease_protein, proposed F420-0 ABC transporter, permease protein	NA|282aa|up_5|NC_016114.1_6799543_6800389_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|332aa|up_4|NC_016114.1_6800451_6801447_-	pfam09557, DUF2382, Domain of unknown function (DUF2382)	NA|240aa|up_3|NC_016114.1_6801689_6802409_+	pfam01955, CbiZ, Adenosylcobinamide amidohydrolase	NA|301aa|up_2|NC_016114.1_6802458_6803361_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|299aa|up_1|NC_016114.1_6803518_6804415_-	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]	NA|403aa|up_0|NC_016114.1_6804411_6805620_-	pfam08007, Cupin_4, Cupin superfamily protein	NA|235aa|down_0|NC_016114.1_6806115_6806820_-	COG1584, COG1584, Predicted membrane protein [Function unknown]	NA|120aa|down_1|NC_016114.1_6806992_6807352_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|118aa|down_2|NC_016114.1_6807934_6808288_-	NA	NA|426aa|down_3|NC_016114.1_6808612_6809890_-	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain	NA|396aa|down_4|NC_016114.1_6809886_6811074_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|454aa|down_5|NC_016114.1_6811094_6812456_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|291aa|down_6|NC_016114.1_6812679_6813552_-	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|253aa|down_7|NC_016114.1_6814035_6814794_+	pfam08445, FR47, FR47-like protein	NA|400aa|down_8|NC_016114.1_6814818_6816018_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|564aa|down_9|NC_016114.1_6816259_6817951_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
GCF_000176115.2_ASM17611v2	NC_016115	Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence	1	61875-61969	1	CRISPRCasFinder	no			Orphan	TGCCGGAAGTGGATTTGACCTGC	23	0	0	NA	NA	N:A	1	1	Orphan	csa3,DEDDh,DinG,WYL,c2c9_V-U4,PD-DExK,cas4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|58aa|up_9|NC_016115.1_49307_49481_-,NA|228aa|up_8|NC_016115.1_49579_50263_-,NA|188aa|up_6|NC_016115.1_52749_53313_-,NA|132aa|up_2|NC_016115.1_58377_58773_+,NA|62aa|up_1|NC_016115.1_59282_59468_+,NA|58aa|down_0|NC_016115.1_62492_62666_-,NA|217aa|down_3|NC_016115.1_65050_65701_+,NA|95aa|down_5|NC_016115.1_66428_66713_+,NA|57aa|down_6|NC_016115.1_67107_67278_+,NA|109aa|down_7|NC_016115.1_67298_67625_+,NA|158aa|down_9|NC_016115.1_70215_70689_+	NA|58aa|up_9|NC_016115.1_49307_49481_-	NA	NA|228aa|up_8|NC_016115.1_49579_50263_-	NA	NA|175aa|up_7|NC_016115.1_50259_50784_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|188aa|up_6|NC_016115.1_52749_53313_-	NA	NA|698aa|up_5|NC_016115.1_53761_55855_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|235aa|up_4|NC_016115.1_56061_56766_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|131aa|up_3|NC_016115.1_56819_57212_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|132aa|up_2|NC_016115.1_58377_58773_+	NA	NA|62aa|up_1|NC_016115.1_59282_59468_+	NA	NA|462aa|up_0|NC_016115.1_59939_61325_-	TIGR00665, DnaB, replicative DNA helicase	NA|58aa|down_0|NC_016115.1_62492_62666_-	NA	NA|229aa|down_1|NC_016115.1_63024_63711_-	pfam13671, AAA_33, AAA domain	NA|252aa|down_2|NC_016115.1_63710_64466_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|217aa|down_3|NC_016115.1_65050_65701_+	NA	NA|180aa|down_4|NC_016115.1_65892_66432_+	pfam02467, Whib, Transcription factor WhiB	NA|95aa|down_5|NC_016115.1_66428_66713_+	NA	NA|57aa|down_6|NC_016115.1_67107_67278_+	NA	NA|109aa|down_7|NC_016115.1_67298_67625_+	NA	NA|636aa|down_8|NC_016115.1_68185_70093_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|158aa|down_9|NC_016115.1_70215_70689_+	NA
