assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000175575.2_ASM17557v2	NZ_CP005986	Acidithiobacillus caldus ATCC 51756 chromosome, complete genome	1	1606294-1606528	1,1	CRISPRCasFinder,PILER-CR	no	c2c4_V-U1	cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal	Type V-U1	CTTGCAAGTACCAAGCCCCTGCAATGGCTA,CTTGCAAGTACCAAGCCCCTGCAATGGC	30,28	0	0	NA	NA	NA:NA	3,2	3	TypeV-U1	cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal,Cas14u_CAS-V	NA|133aa|up_9|NZ_CP005986.1_1595745_1596144_-,NA|182aa|up_8|NZ_CP005986.1_1596211_1596757_-,NA|131aa|up_7|NZ_CP005986.1_1596744_1597137_-,NA|344aa|up_2|NZ_CP005986.1_1603134_1604166_-,c2c4_V-U1|464aa|down_0|NZ_CP005986.1_1606653_1608045_-,NA|107aa|down_6|NZ_CP005986.1_1618248_1618569_+,NA|327aa|down_8|NZ_CP005986.1_1619901_1620882_+,NA|75aa|down_9|NZ_CP005986.1_1621144_1621369_+	NA|133aa|up_9|NZ_CP005986.1_1595745_1596144_-	NA	NA|182aa|up_8|NZ_CP005986.1_1596211_1596757_-	NA	NA|131aa|up_7|NZ_CP005986.1_1596744_1597137_-	NA	NA|703aa|up_6|NZ_CP005986.1_1597138_1599247_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|603aa|up_5|NZ_CP005986.1_1599243_1601052_-	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD	NA|254aa|up_4|NZ_CP005986.1_1601171_1601933_-	pfam09770, PAT1, Topoisomerase II-associated protein PAT1	NA|359aa|up_3|NZ_CP005986.1_1602031_1603108_-	pfam13479, AAA_24, AAA domain	NA|344aa|up_2|NZ_CP005986.1_1603134_1604166_-	NA	NA|594aa|up_1|NZ_CP005986.1_1604179_1605961_-	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|68aa|up_0|NZ_CP005986.1_1606017_1606221_-	pfam09302, XLF, XLF-Cernunnos, XRcc4-like factor, NHEJ component	c2c4_V-U1|464aa|down_0|NZ_CP005986.1_1606653_1608045_-	NA	NA|340aa|down_1|NZ_CP005986.1_1608184_1609204_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|421aa|down_2|NZ_CP005986.1_1610582_1611845_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|478aa|down_3|NZ_CP005986.1_1614047_1615481_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|321aa|down_4|NZ_CP005986.1_1615664_1616627_+	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|497aa|down_5|NZ_CP005986.1_1616649_1618140_+	COG0374, HyaB, Ni,Fe-hydrogenase I large subunit [Energy production and conversion]	NA|107aa|down_6|NZ_CP005986.1_1618248_1618569_+	NA	NA|167aa|down_7|NZ_CP005986.1_1618970_1619471_+	cd06063, H2MP_Cyano-H2up, This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein	NA|327aa|down_8|NZ_CP005986.1_1619901_1620882_+	NA	NA|75aa|down_9|NZ_CP005986.1_1621144_1621369_+	NA
GCF_000175575.2_ASM17557v2	NZ_CP005986	Acidithiobacillus caldus ATCC 51756 chromosome, complete genome	2	1800861-1801017	2	CRISPRCasFinder	no		cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal	Orphan	GAACTAGAGCCAGAACTAGAGCCAG	25	0	0	NA	NA	NA	2	2	Orphan	cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal,Cas14u_CAS-V	NA|63aa|up_1|NZ_CP005986.1_1798654_1798843_+,NA|71aa|down_4|NZ_CP005986.1_1804481_1804694_-	NA|140aa|up_9|NZ_CP005986.1_1788503_1788923_+	cd14797, DUF302, Uncharacterized domain family DUF302	NA|439aa|up_8|NZ_CP005986.1_1788965_1790282_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|129aa|up_7|NZ_CP005986.1_1790296_1790683_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|425aa|up_6|NZ_CP005986.1_1790867_1792142_-	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|387aa|up_5|NZ_CP005986.1_1792219_1793380_-	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|461aa|up_4|NZ_CP005986.1_1793372_1794755_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|522aa|up_3|NZ_CP005986.1_1794793_1796359_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|299aa|up_2|NZ_CP005986.1_1796442_1797339_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|63aa|up_1|NZ_CP005986.1_1798654_1798843_+	NA	NA|239aa|up_0|NZ_CP005986.1_1798926_1799643_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|314aa|down_0|NZ_CP005986.1_1801373_1802315_+	cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins	NA|256aa|down_1|NZ_CP005986.1_1802316_1803084_+	cd07404, MPP_MS158, Microscilla MS158 and related proteins, metallophosphatase domain	NA|115aa|down_2|NZ_CP005986.1_1803306_1803651_+	TIGR02419, kDa_protein_in_gpA_5'region, phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA|169aa|down_3|NZ_CP005986.1_1803696_1804203_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|71aa|down_4|NZ_CP005986.1_1804481_1804694_-	NA	NA|203aa|down_5|NZ_CP005986.1_1804593_1805202_+	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|120aa|down_6|NZ_CP005986.1_1805268_1805628_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|139aa|down_7|NZ_CP005986.1_1805776_1806193_+	pfam10577, UPF0560, Uncharacterized protein family UPF0560	NA|189aa|down_8|NZ_CP005986.1_1806490_1807057_+	cd07404, MPP_MS158, Microscilla MS158 and related proteins, metallophosphatase domain	NA|137aa|down_9|NZ_CP005986.1_1807406_1807817_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]
GCF_000175575.2_ASM17557v2	NZ_CP005986	Acidithiobacillus caldus ATCC 51756 chromosome, complete genome	3	1830737-1830949	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	DinG,cas6e	cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal	Unclear	CGTCGTCCCCGCGTGTGCGGGGGAAATCCTAATTGCAGTC,GTCGTCCCCGCGTACGCGGGGGAAAACCG,GTCGTCCCCGCGNTGTGCGGGGGAAATCCT	40,29,30	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:NA	2,2,3	3	Unclear	cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal,Cas14u_CAS-V	NA|79aa|up_6|NZ_CP005986.1_1824681_1824918_+,NA|276aa|up_4|NZ_CP005986.1_1825528_1826356_+,NA|228aa|up_2|NZ_CP005986.1_1828717_1829401_+,NA|278aa|up_1|NZ_CP005986.1_1829400_1830234_+,NA|156aa|down_1|NZ_CP005986.1_1833080_1833548_-,NA|68aa|down_8|NZ_CP005986.1_1839768_1839972_+,NA|82aa|down_9|NZ_CP005986.1_1840058_1840304_+	NA|200aa|up_9|NZ_CP005986.1_1821052_1821652_+	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	NA|475aa|up_8|NZ_CP005986.1_1822340_1823765_+	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	NA|297aa|up_7|NZ_CP005986.1_1823770_1824661_+	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional	NA|79aa|up_6|NZ_CP005986.1_1824681_1824918_+	NA	NA|74aa|up_5|NZ_CP005986.1_1824948_1825170_+	pfam14373, Imm_superinfect, Superinfection immunity protein	NA|276aa|up_4|NZ_CP005986.1_1825528_1826356_+	NA	DinG|727aa|up_3|NZ_CP005986.1_1826552_1828733_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|228aa|up_2|NZ_CP005986.1_1828717_1829401_+	NA	NA|278aa|up_1|NZ_CP005986.1_1829400_1830234_+	NA	cas6e|152aa|up_0|NZ_CP005986.1_1830175_1830631_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|325aa|down_0|NZ_CP005986.1_1831049_1832024_+	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2	NA|156aa|down_1|NZ_CP005986.1_1833080_1833548_-	NA	NA|128aa|down_2|NZ_CP005986.1_1833758_1834142_+	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD	NA|421aa|down_3|NZ_CP005986.1_1834186_1835449_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|387aa|down_4|NZ_CP005986.1_1835534_1836695_+	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases	NA|194aa|down_5|NZ_CP005986.1_1836968_1837550_+	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|287aa|down_6|NZ_CP005986.1_1837569_1838430_+	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain	NA|402aa|down_7|NZ_CP005986.1_1838507_1839713_+	cd00140, beta_clamp, Beta clamp domain	NA|68aa|down_8|NZ_CP005986.1_1839768_1839972_+	NA	NA|82aa|down_9|NZ_CP005986.1_1840058_1840304_+	NA
GCF_000175575.2_ASM17557v2	NZ_CP005986	Acidithiobacillus caldus ATCC 51756 chromosome, complete genome	4	1832065-1833062	4,2,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	DinG,cas6e	cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal	Unclear	GTCGTCCCCGCGTACGCGGGGGAAAACCG,GTCGTCCCCGCGTNCGCGGGGGAAA,CGTCCCCGCGTGCGCGGGGGAAAACC,GTAGTCCCCGCGTATGCGGGGGAGAACCACAA	29,25,26,32	1	1	1832392-1832422	NZ_CP005988.1_7693-7663	I-C,I-E,II-B:NA:NA:NA	16,16,6,6	16	Unclear	cas4,DEDDh,csa3,c2c4_V-U1,DinG,cas6e,c2c10_CAS-V-U3,cas3,Cas9_archaeal,Cas14u_CAS-V	NA|79aa|up_7|NZ_CP005986.1_1824681_1824918_+,NA|276aa|up_5|NZ_CP005986.1_1825528_1826356_+,NA|228aa|up_3|NZ_CP005986.1_1828717_1829401_+,NA|278aa|up_2|NZ_CP005986.1_1829400_1830234_+,NA|156aa|down_0|NZ_CP005986.1_1833080_1833548_-,NA|68aa|down_7|NZ_CP005986.1_1839768_1839972_+,NA|82aa|down_8|NZ_CP005986.1_1840058_1840304_+	NA|475aa|up_9|NZ_CP005986.1_1822340_1823765_+	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	NA|297aa|up_8|NZ_CP005986.1_1823770_1824661_+	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional	NA|79aa|up_7|NZ_CP005986.1_1824681_1824918_+	NA	NA|74aa|up_6|NZ_CP005986.1_1824948_1825170_+	pfam14373, Imm_superinfect, Superinfection immunity protein	NA|276aa|up_5|NZ_CP005986.1_1825528_1826356_+	NA	DinG|727aa|up_4|NZ_CP005986.1_1826552_1828733_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|228aa|up_3|NZ_CP005986.1_1828717_1829401_+	NA	NA|278aa|up_2|NZ_CP005986.1_1829400_1830234_+	NA	cas6e|152aa|up_1|NZ_CP005986.1_1830175_1830631_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|325aa|up_0|NZ_CP005986.1_1831049_1832024_+	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2	NA|156aa|down_0|NZ_CP005986.1_1833080_1833548_-	NA	NA|128aa|down_1|NZ_CP005986.1_1833758_1834142_+	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD	NA|421aa|down_2|NZ_CP005986.1_1834186_1835449_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|387aa|down_3|NZ_CP005986.1_1835534_1836695_+	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases	NA|194aa|down_4|NZ_CP005986.1_1836968_1837550_+	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|287aa|down_5|NZ_CP005986.1_1837569_1838430_+	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain	NA|402aa|down_6|NZ_CP005986.1_1838507_1839713_+	cd00140, beta_clamp, Beta clamp domain	NA|68aa|down_7|NZ_CP005986.1_1839768_1839972_+	NA	NA|82aa|down_8|NZ_CP005986.1_1840058_1840304_+	NA	NA|858aa|down_9|NZ_CP005986.1_1840313_1842887_-	PRK13880, PRK13880, conjugal transfer coupling protein TraG; Provisional
