assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000174395.2_ASM17439v2	NC_017960	Enterococcus faecium DO, complete sequence	1	2333405-2333514	1	CRISPRCasFinder	no		cas3,DEDDh,cas2,DinG,RT,csa3,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,WYL	NA,NA	NA|322aa|up_9|NC_017960.1_2323157_2324123_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_8|NC_017960.1_2324211_2325351_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_7|NC_017960.1_2325657_2326371_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_6|NC_017960.1_2326624_2327326_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_5|NC_017960.1_2327559_2329092_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|303aa|up_4|NC_017960.1_2329481_2330389_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|350aa|up_3|NC_017960.1_2330482_2331532_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NC_017960.1_2331613_2332303_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NC_017960.1_2332408_2332777_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NC_017960.1_2332828_2333332_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NC_017960.1_2333741_2334431_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NC_017960.1_2334534_2334957_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NC_017960.1_2335299_2335968_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NC_017960.1_2335980_2336853_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|302aa|down_4|NC_017960.1_2338134_2339040_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_5|NC_017960.1_2339098_2339644_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_6|NC_017960.1_2339744_2339915_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_7|NC_017960.1_2339938_2340091_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_8|NC_017960.1_2340252_2340897_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|168aa|down_9|NC_017960.1_2340952_2341456_-	pfam06177, QueT, QueT transporter
GCF_000174395.2_ASM17439v2	NC_017963	Enterococcus faecium DO plasmid 3, complete sequence	1	33016-33144	1	CRISPRCasFinder	no		cas14j	Orphan	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,WYL	NA|87aa|up_8|NC_017963.1_25151_25412_-,NA|252aa|up_7|NC_017963.1_25424_26180_-,NA|65aa|up_3|NC_017963.1_29748_29943_-,NA|80aa|up_2|NC_017963.1_30054_30294_-,NA|111aa|up_0|NC_017963.1_31367_31700_-,NA|309aa|down_3|NC_017963.1_38338_39265_+,NA|71aa|down_6|NC_017963.1_39986_40199_+	NA|697aa|up_9|NC_017963.1_23064_25155_-	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain	NA|87aa|up_8|NC_017963.1_25151_25412_-	NA	NA|252aa|up_7|NC_017963.1_25424_26180_-	NA	NA|251aa|up_6|NC_017963.1_26195_26948_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|659aa|up_5|NC_017963.1_26962_28939_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|224aa|up_4|NC_017963.1_28991_29663_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|65aa|up_3|NC_017963.1_29748_29943_-	NA	NA|80aa|up_2|NC_017963.1_30054_30294_-	NA	NA|114aa|up_1|NC_017963.1_30407_30749_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|111aa|up_0|NC_017963.1_31367_31700_-	NA	NA|393aa|down_0|NC_017963.1_35249_36428_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|85aa|down_1|NC_017963.1_37207_37462_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|106aa|down_2|NC_017963.1_37462_37780_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|309aa|down_3|NC_017963.1_38338_39265_+	NA	NA|88aa|down_4|NC_017963.1_39374_39638_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|91aa|down_5|NC_017963.1_39637_39910_+	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393	NA|71aa|down_6|NC_017963.1_39986_40199_+	NA	NA|227aa|down_7|NC_017963.1_40211_40892_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|248aa|down_8|NC_017963.1_41591_42335_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|475aa|down_9|NC_017963.1_42334_43759_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
