assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	1	286877-287016	1	CRISPRCasFinder	no	cas14j	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Unclear	TTCCCCGGATTGTCGTTTGCTGTGCCGGTTCC	32	0	0	NA	NA	NA	1	1	TypeV	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|92aa|up_9|NC_016023.1_268563_268839_-,NA|47aa|down_6|NC_016023.1_295522_295663_+	NA|92aa|up_9|NC_016023.1_268563_268839_-	NA	NA|308aa|up_8|NC_016023.1_269271_270195_+	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|473aa|up_7|NC_016023.1_271526_272945_-	cd17366, MFS_ProP, Proline/betaine transporter of the Major Facilitator Superfamily of transporters	NA|330aa|up_6|NC_016023.1_273603_274593_-	cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains	NA|438aa|up_5|NC_016023.1_275476_276790_-	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|198aa|up_4|NC_016023.1_277704_278298_+	cd16961, RMtype1_S_TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains	NA|510aa|up_3|NC_016023.1_278297_279827_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|428aa|up_2|NC_016023.1_279835_281119_+	cd17273, RMtype1_S_EcoJA69PI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|1036aa|up_1|NC_016023.1_281158_284266_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|241aa|up_0|NC_016023.1_284279_285002_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|99aa|down_0|NC_016023.1_289468_289765_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|down_1|NC_016023.1_289997_291101_+	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|408aa|down_2|NC_016023.1_291186_292410_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|293aa|down_3|NC_016023.1_292735_293614_+	pfam10114, PocR, Sensory domain found in PocR	NA|125aa|down_4|NC_016023.1_293947_294322_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	cas14j|373aa|down_5|NC_016023.1_294316_295435_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|47aa|down_6|NC_016023.1_295522_295663_+	NA	NA|159aa|down_7|NC_016023.1_296295_296772_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|200aa|down_8|NC_016023.1_296784_297384_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|180aa|down_9|NC_016023.1_297380_297920_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	2	320637-321284	1	CRT	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	TTTTGAANCNGNCAAAAGGACAAAA	25	3	14	320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320765-320791|320921-320947|320973-320999	NC_016023.1_2593908-2593882|NC_016023.1_2594167-2594141|NC_016023.1_2594686-2594660|NC_016023.1_1300106-1300132|NC_016023.1_2593856-2593830|NC_016023.1_2594064-2594038|NC_016023.1_2594116-2594090|NC_016023.1_2594479-2594453|NC_016023.1_2594531-2594505|NC_016023.1_2594738-2594712|NC_016023.1_2594790-2594764|NC_016023.1_2594842-2594816|NC_016023.1_2594842-2594816|NC_016023.1_2594842-2594816	NA	12	12	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|52aa|up_9|NC_016023.1_314338_314494_+,NA|49aa|up_8|NC_016023.1_315554_315701_+,NA|57aa|up_7|NC_016023.1_316061_316232_+,NA|68aa|up_6|NC_016023.1_316532_316736_+,NA|66aa|up_5|NC_016023.1_316971_317169_+,NA|85aa|up_1|NC_016023.1_319455_319710_-,NA|48aa|down_0|NC_016023.1_321591_321735_-	NA|52aa|up_9|NC_016023.1_314338_314494_+	NA	NA|49aa|up_8|NC_016023.1_315554_315701_+	NA	NA|57aa|up_7|NC_016023.1_316061_316232_+	NA	NA|68aa|up_6|NC_016023.1_316532_316736_+	NA	NA|66aa|up_5|NC_016023.1_316971_317169_+	NA	NA|244aa|up_4|NC_016023.1_317533_318265_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|171aa|up_3|NC_016023.1_318332_318845_+	PRK13679, PRK13679, hypothetical protein; Provisional	NA|143aa|up_2|NC_016023.1_318850_319279_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|85aa|up_1|NC_016023.1_319455_319710_-	NA	NA|86aa|up_0|NC_016023.1_319811_320069_-	pfam14069, SpoVIF, Stage VI sporulation protein F	NA|48aa|down_0|NC_016023.1_321591_321735_-	NA	NA|119aa|down_1|NC_016023.1_321819_322176_-	TIGR02839, stage_V_sporulation_protein_AE, stage V sporulation protein AE	NA|337aa|down_2|NC_016023.1_322354_323365_-	PRK12404, PRK12404, stage V sporulation protein AD; Provisional	NA|159aa|down_3|NC_016023.1_323364_323841_-	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC	NA|155aa|down_4|NC_016023.1_323857_324322_-	cd16016, AP-SPAP, SPAP is a subclass of alkaline phosphatase (AP)	NA|119aa|down_5|NC_016023.1_324648_325005_-	pfam07098, DUF1360, Protein of unknown function (DUF1360)	NA|147aa|down_6|NC_016023.1_325153_325594_+	pfam10612, Spore-coat_CotZ, Spore coat protein Z	NA|235aa|down_7|NC_016023.1_325642_326347_-	pfam14153, Spore_coat_CotO, Spore coat protein CotO	NA|231aa|down_8|NC_016023.1_326615_327308_+	pfam11780, DUF3318, Protein of unknown function (DUF3318)	NA|260aa|down_9|NC_016023.1_327438_328218_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	3	635001-635092	2	CRISPRCasFinder	no	DinG	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Type IV-A	CCAAAGGCTTTGCAAGGGCTAGAAC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA,NA|69aa|down_0|NC_016023.1_635241_635448_-,NA|59aa|down_9|NC_016023.1_645289_645466_-	NA|315aa|up_9|NC_016023.1_619952_620897_+	cd19103, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|737aa|up_8|NC_016023.1_620948_623159_+	PRK06922, PRK06922, class I SAM-dependent methyltransferase	NA|255aa|up_7|NC_016023.1_623205_623970_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|62aa|up_6|NC_016023.1_624012_624198_+	pfam13076, Fur_reg_FbpA, Fur-regulated basic protein A	NA|260aa|up_5|NC_016023.1_624506_625286_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|181aa|up_4|NC_016023.1_625314_625857_-	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)	NA|320aa|up_3|NC_016023.1_625989_626949_-	cd06286, PBP1_CcpB-like, ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species	NA|354aa|up_2|NC_016023.1_628978_630040_-	cd05285, sorbitol_DH, Sorbitol dehydrogenase	NA|384aa|up_1|NC_016023.1_633085_634237_+	TIGR04478, radical_SAM_superfamily_domain_protein, radical SAM/CxCxxxxC motif protein YfkAB	NA|176aa|up_0|NC_016023.1_634387_634915_+	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)	NA|69aa|down_0|NC_016023.1_635241_635448_-	NA	NA|142aa|down_1|NC_016023.1_635648_636074_+	pfam00582, Usp, Universal stress protein family	NA|443aa|down_2|NC_016023.1_636601_637930_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|265aa|down_3|NC_016023.1_638069_638864_+	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|300aa|down_4|NC_016023.1_639026_639926_-	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|553aa|down_5|NC_016023.1_640013_641672_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|508aa|down_6|NC_016023.1_641655_643179_-	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|129aa|down_7|NC_016023.1_643175_643562_-	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|194aa|down_8|NC_016023.1_644627_645209_+	pfam02632, BioY, BioY family	NA|59aa|down_9|NC_016023.1_645289_645466_-	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	4	720147-720227	3	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	AAACCCGGACTTGCAAGCACGCCA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA,NA	NA|220aa|up_9|NC_016023.1_705032_705692_-	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW	NA|309aa|up_8|NC_016023.1_706038_706965_+	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|650aa|up_7|NC_016023.1_706989_708939_+	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|203aa|up_6|NC_016023.1_708935_709544_+	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily	NA|95aa|up_5|NC_016023.1_709543_709828_+	TIGR02901, cytochrome_aa3_quinol_oxidase_subunit_IV, cytochrome aa3 quinol oxidase, subunit IV	NA|248aa|up_4|NC_016023.1_710002_710746_-	cd05233, SDR_c, classical (c) SDRs	NA|271aa|up_3|NC_016023.1_710955_711768_-	PRK13546, PRK13546, teichoic acids export ABC transporter ATP-binding subunit TagH	NA|162aa|up_2|NC_016023.1_711835_712321_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|1474aa|up_1|NC_016023.1_712513_716935_-	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|582aa|up_0|NC_016023.1_717337_719083_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|329aa|down_0|NC_016023.1_720304_721291_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases	NA|105aa|down_1|NC_016023.1_721307_721622_-	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|242aa|down_2|NC_016023.1_721798_722524_-	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|249aa|down_3|NC_016023.1_722846_723593_-	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|415aa|down_4|NC_016023.1_723708_724953_+	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold	NA|405aa|down_5|NC_016023.1_725138_726353_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|276aa|down_6|NC_016023.1_726365_727193_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|765aa|down_7|NC_016023.1_727402_729697_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|392aa|down_8|NC_016023.1_729842_731018_-	PRK08064, PRK08064, cystathionine beta-lyase MetC	NA|372aa|down_9|NC_016023.1_731014_732130_-	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	5	922253-922346	4	CRISPRCasFinder	no	cas14j	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Unclear	ATATAAGTACTACCAAATATCCAAGTATC	29	0	0	NA	NA	NA	1	1	TypeV	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|86aa|up_8|NC_016023.1_906140_906398_+,NA|48aa|up_7|NC_016023.1_906552_906696_+,NA|47aa|up_4|NC_016023.1_913249_913390_+,NA|204aa|up_0|NC_016023.1_921322_921934_-,NA|74aa|down_2|NC_016023.1_925296_925518_-	NA|261aa|up_9|NC_016023.1_905227_906010_+	pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268)	NA|86aa|up_8|NC_016023.1_906140_906398_+	NA	NA|48aa|up_7|NC_016023.1_906552_906696_+	NA	NA|1046aa|up_6|NC_016023.1_907961_911099_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	cas14j|373aa|up_5|NC_016023.1_912043_913162_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|47aa|up_4|NC_016023.1_913249_913390_+	NA	NA|380aa|up_3|NC_016023.1_913789_914929_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|1279aa|up_2|NC_016023.1_915177_919014_-	pfam17936, Big_6, Bacterial Ig domain	NA|500aa|up_1|NC_016023.1_919355_920855_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|204aa|up_0|NC_016023.1_921322_921934_-	NA	NA|453aa|down_0|NC_016023.1_922581_923940_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|211aa|down_1|NC_016023.1_924257_924890_+	cd18712, PIN_VapC-like_DUF411, CapC-like PIN (DUF411) domain in DUF411 domain-containing proteins and related proteins	NA|74aa|down_2|NC_016023.1_925296_925518_-	NA	NA|449aa|down_3|NC_016023.1_925528_926875_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|241aa|down_4|NC_016023.1_927422_928145_+	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2	NA|218aa|down_5|NC_016023.1_928240_928894_+	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1	NA|1201aa|down_6|NC_016023.1_928930_932533_+	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|575aa|down_7|NC_016023.1_932529_934254_+	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|207aa|down_8|NC_016023.1_934715_935336_-	PRK00170, PRK00170, azoreductase; Reviewed	NA|603aa|down_9|NC_016023.1_935891_937700_-	pfam04851, ResIII, Type III restriction enzyme, res subunit
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	6	1096065-1097943	5,2,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	GTTTCAATTCCTCATAGGTAAAATACTAAC,GTTTCAATTCCTCATAGGTAAAATACTAAC,GTTTCAATTCCTCATAGGTAAAATACTAAC	30,30,30	0	0	NA	NA	NA:NA:NA	28,28,28	28	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|60aa|up_6|NC_016023.1_1086002_1086182_-,NA|110aa|up_4|NC_016023.1_1088146_1088476_-,NA|183aa|up_0|NC_016023.1_1093875_1094424_+,NA|207aa|down_9|NC_016023.1_1107403_1108024_-	NA|247aa|up_9|NC_016023.1_1083078_1083819_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|253aa|up_8|NC_016023.1_1083825_1084584_-	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|225aa|up_7|NC_016023.1_1084979_1085654_-	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin)	NA|60aa|up_6|NC_016023.1_1086002_1086182_-	NA	NA|468aa|up_5|NC_016023.1_1086593_1087997_+	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein	NA|110aa|up_4|NC_016023.1_1088146_1088476_-	NA	NA|473aa|up_3|NC_016023.1_1088953_1090372_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|488aa|up_2|NC_016023.1_1091199_1092663_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|195aa|up_1|NC_016023.1_1093115_1093700_-	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal	NA|183aa|up_0|NC_016023.1_1093875_1094424_+	NA	NA|353aa|down_0|NC_016023.1_1098281_1099340_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|135aa|down_1|NC_016023.1_1099382_1099787_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|188aa|down_2|NC_016023.1_1100002_1100566_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|538aa|down_3|NC_016023.1_1100634_1102248_-	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|258aa|down_4|NC_016023.1_1102318_1103092_-	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional	NA|415aa|down_5|NC_016023.1_1103069_1104314_-	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|340aa|down_6|NC_016023.1_1104501_1105521_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|240aa|down_7|NC_016023.1_1105719_1106439_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|196aa|down_8|NC_016023.1_1106823_1107411_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|207aa|down_9|NC_016023.1_1107403_1108024_-	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	7	1279191-1279281	6	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	TATGCTTGTTCCAGCAAAAGACGGG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA,NA	NA|178aa|up_9|NC_016023.1_1271379_1271913_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|62aa|up_8|NC_016023.1_1272062_1272248_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|49aa|up_7|NC_016023.1_1272283_1272430_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|217aa|up_6|NC_016023.1_1272738_1273389_-	PRK08295, PRK08295, RNA polymerase sporulation sigma factor SigH	NA|170aa|up_5|NC_016023.1_1273455_1273965_-	COG3688, COG3688, Predicted RNA-binding protein containing a PIN domain [General function prediction only]	NA|248aa|up_4|NC_016023.1_1273966_1274710_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|138aa|up_3|NC_016023.1_1274709_1275123_-	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|466aa|up_2|NC_016023.1_1275119_1276517_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|223aa|up_1|NC_016023.1_1276497_1277166_-	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|487aa|up_0|NC_016023.1_1277567_1279028_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|159aa|down_0|NC_016023.1_1279580_1280057_-	pfam02542, YgbB, YgbB family	NA|227aa|down_1|NC_016023.1_1280059_1280740_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|362aa|down_2|NC_016023.1_1280806_1281892_-	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|457aa|down_3|NC_016023.1_1282238_1283609_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|817aa|down_4|NC_016023.1_1283841_1286292_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|356aa|down_5|NC_016023.1_1286308_1287376_-	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|182aa|down_6|NC_016023.1_1287375_1287921_-	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|154aa|down_7|NC_016023.1_1287940_1288402_-	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|86aa|down_8|NC_016023.1_1288691_1288949_-	pfam13108, DUF3969, Protein of unknown function (DUF3969)	NA|89aa|down_9|NC_016023.1_1294958_1295225_-	TIGR02862, Sigma-K_factor-processing_regulatory_protein_BofA, pro-sigmaK processing inhibitor BofA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	8	1418085-1418176	7	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	TCGTAGTGCTTTTTTATTATATGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA,NA|72aa|down_8|NC_016023.1_1427788_1428004_+,NA|495aa|down_9|NC_016023.1_1428106_1429591_+	NA|398aa|up_9|NC_016023.1_1407879_1409073_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|157aa|up_8|NC_016023.1_1409085_1409556_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|96aa|up_7|NC_016023.1_1409809_1410097_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|165aa|up_6|NC_016023.1_1410158_1410653_+	PRK06751, PRK06751, single-stranded DNA-binding protein; Provisional	NA|80aa|up_5|NC_016023.1_1410697_1410937_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|314aa|up_4|NC_016023.1_1411093_1412035_+	pfam09991, DUF2232, Predicted membrane protein (DUF2232)	NA|658aa|up_3|NC_016023.1_1412070_1414044_+	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|148aa|up_2|NC_016023.1_1414040_1414484_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|452aa|up_1|NC_016023.1_1414703_1416059_+	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|430aa|up_0|NC_016023.1_1416233_1417523_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|237aa|down_0|NC_016023.1_1418501_1419212_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|607aa|down_1|NC_016023.1_1419216_1421037_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|428aa|down_2|NC_016023.1_1421033_1422317_+	pfam07435, YycH, YycH protein	NA|261aa|down_3|NC_016023.1_1422303_1423086_+	pfam09648, YycI, YycH protein	NA|265aa|down_4|NC_016023.1_1423102_1423897_+	COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	NA|421aa|down_5|NC_016023.1_1424114_1425377_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|160aa|down_6|NC_016023.1_1425675_1426155_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|435aa|down_7|NC_016023.1_1426464_1427769_-	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|72aa|down_8|NC_016023.1_1427788_1428004_+	NA	NA|495aa|down_9|NC_016023.1_1428106_1429591_+	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	9	1490096-1490173	8	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	CCAAATGTCCTTATAACGGGGATGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA,NA|49aa|down_5|NC_016023.1_1495851_1495998_+	NA|260aa|up_9|NC_016023.1_1475910_1476690_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|347aa|up_8|NC_016023.1_1476952_1477993_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|221aa|up_7|NC_016023.1_1477982_1478645_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|281aa|up_6|NC_016023.1_1478706_1479549_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|594aa|up_5|NC_016023.1_1479784_1481566_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|239aa|up_4|NC_016023.1_1481540_1482257_+	PRK14084, PRK14084, DNA-binding response regulator	NA|601aa|up_3|NC_016023.1_1482387_1484190_+	COG1966, CstA, Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]	NA|358aa|up_2|NC_016023.1_1484529_1485603_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|250aa|up_1|NC_016023.1_1486056_1486806_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|149aa|up_0|NC_016023.1_1486881_1487328_+	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE	NA|338aa|down_0|NC_016023.1_1490324_1491338_-	pfam07854, DUF1646, Protein of unknown function (DUF1646)	NA|616aa|down_1|NC_016023.1_1491691_1493539_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|314aa|down_2|NC_016023.1_1493687_1494629_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|126aa|down_3|NC_016023.1_1494731_1495109_+	PRK01658, PRK01658, CidA/LrgA family holin-like protein	NA|228aa|down_4|NC_016023.1_1495098_1495782_+	pfam04172, LrgB, LrgB-like family	NA|49aa|down_5|NC_016023.1_1495851_1495998_+	NA	NA|154aa|down_6|NC_016023.1_1496131_1496593_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|146aa|down_7|NC_016023.1_1496606_1497044_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|226aa|down_8|NC_016023.1_1497191_1497869_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|423aa|down_9|NC_016023.1_1497852_1499121_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	10	1855983-1856078	9	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	GATTTGTGTCGCCCTATATTGTCGAAAAAT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|87aa|up_4|NC_016023.1_1852877_1853138_-,NA|131aa|up_3|NC_016023.1_1853448_1853841_+,NA|45aa|up_2|NC_016023.1_1854040_1854175_+,NA|138aa|down_9|NC_016023.1_1870885_1871299_-	NA|515aa|up_9|NC_016023.1_1844713_1846258_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|359aa|up_8|NC_016023.1_1846463_1847540_+	pfam09798, LCD1, DNA damage checkpoint protein	NA|676aa|up_7|NC_016023.1_1847539_1849567_+	COG1401, McrB, GTPase subunit of restriction endonuclease [Defense mechanisms]	NA|595aa|up_6|NC_016023.1_1849550_1851335_+	pfam09823, DUF2357, Domain of unknown function (DUF2357)	NA|305aa|up_5|NC_016023.1_1851575_1852490_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|87aa|up_4|NC_016023.1_1852877_1853138_-	NA	NA|131aa|up_3|NC_016023.1_1853448_1853841_+	NA	NA|45aa|up_2|NC_016023.1_1854040_1854175_+	NA	NA|221aa|up_1|NC_016023.1_1854392_1855055_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|82aa|up_0|NC_016023.1_1855482_1855728_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|490aa|down_0|NC_016023.1_1857180_1858650_+	PRK07487, PRK07487, amidase; Provisional	NA|491aa|down_1|NC_016023.1_1858702_1860175_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|200aa|down_2|NC_016023.1_1860556_1861156_+	PRK00872, PRK00872, hypothetical protein; Provisional	NA|283aa|down_3|NC_016023.1_1861115_1861964_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|474aa|down_4|NC_016023.1_1862335_1863757_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|193aa|down_5|NC_016023.1_1865775_1866354_+	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|153aa|down_6|NC_016023.1_1866741_1867200_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|585aa|down_7|NC_016023.1_1867241_1868996_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|621aa|down_8|NC_016023.1_1868970_1870833_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|138aa|down_9|NC_016023.1_1870885_1871299_-	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	11	2117433-2121795	2,10,3,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Type I-B	GTTTCAATTCCTCATAGGTAAAATACAAAC,GTTTGTATTTTACCTATGAGGAATTGAAAC,GTTTGTATTTTACCTATGAGGAATTGAAAC,GTTTCAATTCCTCATAGGTAAAATACAAAC	30,30,30,30	0	0	NA	NA	NA:NA:NA:NA	63,65,65,63	65	TypeI-B	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	cas8b1|675aa|up_7|NC_016023.1_2107338_2109363_+,NA|92aa|down_2|NC_016023.1_2127250_2127526_+,NA|302aa|down_9|NC_016023.1_2135073_2135979_-	NA|1082aa|up_9|NC_016023.1_2102800_2106046_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	cas6|252aa|up_8|NC_016023.1_2106531_2107287_+	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b1|675aa|up_7|NC_016023.1_2107338_2109363_+	NA	cas7b|319aa|up_6|NC_016023.1_2109349_2110306_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|230aa|up_5|NC_016023.1_2110318_2111008_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|788aa|up_4|NC_016023.1_2110995_2113359_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|170aa|up_3|NC_016023.1_2113371_2113881_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|453aa|up_2|NC_016023.1_2114199_2115558_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas1|277aa|up_1|NC_016023.1_2115620_2116451_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NC_016023.1_2116460_2116724_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|488aa|down_0|NC_016023.1_2122074_2123538_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|371aa|down_1|NC_016023.1_2124789_2125903_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|92aa|down_2|NC_016023.1_2127250_2127526_+	NA	NA|140aa|down_3|NC_016023.1_2127646_2128066_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|207aa|down_4|NC_016023.1_2128919_2129540_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|434aa|down_5|NC_016023.1_2130120_2131422_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|382aa|down_6|NC_016023.1_2131648_2132794_+	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|284aa|down_7|NC_016023.1_2132949_2133801_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|305aa|down_8|NC_016023.1_2134136_2135051_+	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|302aa|down_9|NC_016023.1_2135073_2135979_-	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	12	2123872-2124703	11,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Type I-B	GTTTGTATTTTACCTATGAGGAATTGAAAC,GTTTGTATTTTACCTATGAGGAATTGAAAC,GTTTCAATTCCTCATAGGTAAAATACAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	12,12,11	12	TypeI-B	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	cas8b1|675aa|up_8|NC_016023.1_2107338_2109363_+,NA|92aa|down_1|NC_016023.1_2127250_2127526_+,NA|302aa|down_8|NC_016023.1_2135073_2135979_-,NA|141aa|down_9|NC_016023.1_2135994_2136417_-	cas6|252aa|up_9|NC_016023.1_2106531_2107287_+	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b1|675aa|up_8|NC_016023.1_2107338_2109363_+	NA	cas7b|319aa|up_7|NC_016023.1_2109349_2110306_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|230aa|up_6|NC_016023.1_2110318_2111008_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|788aa|up_5|NC_016023.1_2110995_2113359_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|170aa|up_4|NC_016023.1_2113371_2113881_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|453aa|up_3|NC_016023.1_2114199_2115558_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas1|277aa|up_2|NC_016023.1_2115620_2116451_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_1|NC_016023.1_2116460_2116724_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|488aa|up_0|NC_016023.1_2122074_2123538_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|371aa|down_0|NC_016023.1_2124789_2125903_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|92aa|down_1|NC_016023.1_2127250_2127526_+	NA	NA|140aa|down_2|NC_016023.1_2127646_2128066_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|207aa|down_3|NC_016023.1_2128919_2129540_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|434aa|down_4|NC_016023.1_2130120_2131422_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|382aa|down_5|NC_016023.1_2131648_2132794_+	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|284aa|down_6|NC_016023.1_2132949_2133801_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|305aa|down_7|NC_016023.1_2134136_2135051_+	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|302aa|down_8|NC_016023.1_2135073_2135979_-	NA	NA|141aa|down_9|NC_016023.1_2135994_2136417_-	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	13	2126172-2127007	5,12,5	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Type I-B	GTTTCAATTCCTCATAGGTAAAATACAAAC,GTTTGTATTTTACCTATGAGGAATTGAAAC,GTTTGTATTTTACCTATGAGGAATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	11,12,12	12	TypeI-B	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	cas8b1|675aa|up_9|NC_016023.1_2107338_2109363_+,NA|92aa|down_0|NC_016023.1_2127250_2127526_+,NA|302aa|down_7|NC_016023.1_2135073_2135979_-,NA|141aa|down_8|NC_016023.1_2135994_2136417_-,NA|203aa|down_9|NC_016023.1_2136441_2137050_-	cas8b1|675aa|up_9|NC_016023.1_2107338_2109363_+	NA	cas7b|319aa|up_8|NC_016023.1_2109349_2110306_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|230aa|up_7|NC_016023.1_2110318_2111008_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|788aa|up_6|NC_016023.1_2110995_2113359_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|170aa|up_5|NC_016023.1_2113371_2113881_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|453aa|up_4|NC_016023.1_2114199_2115558_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas1|277aa|up_3|NC_016023.1_2115620_2116451_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_2|NC_016023.1_2116460_2116724_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|488aa|up_1|NC_016023.1_2122074_2123538_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|371aa|up_0|NC_016023.1_2124789_2125903_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|92aa|down_0|NC_016023.1_2127250_2127526_+	NA	NA|140aa|down_1|NC_016023.1_2127646_2128066_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|207aa|down_2|NC_016023.1_2128919_2129540_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|434aa|down_3|NC_016023.1_2130120_2131422_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|382aa|down_4|NC_016023.1_2131648_2132794_+	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|284aa|down_5|NC_016023.1_2132949_2133801_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|305aa|down_6|NC_016023.1_2134136_2135051_+	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|302aa|down_7|NC_016023.1_2135073_2135979_-	NA	NA|141aa|down_8|NC_016023.1_2135994_2136417_-	NA	NA|203aa|down_9|NC_016023.1_2136441_2137050_-	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	14	2307511-2307617	13	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	GGTTCTGAATTTGCCAGCGAAACGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA,NA	NA|106aa|up_9|NC_016023.1_2292088_2292406_+	pfam08838, DUF1811, Protein of unknown function (DUF1811)	NA|373aa|up_8|NC_016023.1_2294184_2295303_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|327aa|up_7|NC_016023.1_2295481_2296462_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|53aa|up_6|NC_016023.1_2296548_2296707_+	pfam08176, SspK, Small acid-soluble spore protein K family	NA|292aa|up_5|NC_016023.1_2297037_2297913_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|103aa|up_4|NC_016023.1_2298562_2298871_+	pfam14118, YfzA, YfzA-like protein	NA|486aa|up_3|NC_016023.1_2299000_2300458_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1521aa|up_2|NC_016023.1_2300736_2305299_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|305aa|up_1|NC_016023.1_2305423_2306338_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|250aa|up_0|NC_016023.1_2306620_2307370_+	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL	NA|85aa|down_0|NC_016023.1_2307842_2308097_+	pfam14182, YgaB, YgaB-like protein	NA|177aa|down_1|NC_016023.1_2308251_2308782_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|583aa|down_2|NC_016023.1_2308882_2310631_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|360aa|down_3|NC_016023.1_2310808_2311888_+	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|296aa|down_4|NC_016023.1_2311878_2312766_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|490aa|down_5|NC_016023.1_2312783_2314253_+	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|290aa|down_6|NC_016023.1_2314252_2315122_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|93aa|down_7|NC_016023.1_2316595_2316874_+	pfam10942, DUF2619, Protein of unknown function (DUF2619)	NA|423aa|down_8|NC_016023.1_2317639_2318908_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|214aa|down_9|NC_016023.1_2319012_2319654_-	pfam02588, YitT_membrane, Uncharacterized 5xTM membrane BCR, YitT family COG1284
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	15	2540824-2540911	14	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	TCGACAACAATTAGCGCCCATGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|66aa|up_6|NC_016023.1_2532686_2532884_-,NA	NA|344aa|up_9|NC_016023.1_2530083_2531115_+	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|70aa|up_8|NC_016023.1_2531509_2531719_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|129aa|up_7|NC_016023.1_2531984_2532371_+	PRK08059, PRK08059, general stress protein 13; Validated	NA|66aa|up_6|NC_016023.1_2532686_2532884_-	NA	NA|157aa|up_5|NC_016023.1_2533246_2533717_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|77aa|up_4|NC_016023.1_2533869_2534100_-	COG2155, COG2155, Uncharacterized conserved protein [Function unknown]	NA|450aa|up_3|NC_016023.1_2534256_2535606_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|334aa|up_2|NC_016023.1_2535723_2536725_-	pfam07885, Ion_trans_2, Ion channel	NA|310aa|up_1|NC_016023.1_2538226_2539156_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein	NA|490aa|up_0|NC_016023.1_2539170_2540640_+	cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like	NA|389aa|down_0|NC_016023.1_2541167_2542334_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|382aa|down_1|NC_016023.1_2542409_2543555_+	PRK11259, solA, N-methyl-L-tryptophan oxidase	NA|157aa|down_2|NC_016023.1_2543616_2544087_+	pfam02681, DUF212, Divergent PAP2 family	NA|261aa|down_3|NC_016023.1_2544944_2545727_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|365aa|down_4|NC_016023.1_2546052_2547147_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|229aa|down_5|NC_016023.1_2547139_2547826_+	cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis	NA|684aa|down_6|NC_016023.1_2548048_2550100_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|472aa|down_7|NC_016023.1_2550303_2551719_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|383aa|down_8|NC_016023.1_2552200_2553349_+	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|534aa|down_9|NC_016023.1_2553543_2555145_-	cd07778, FGGY_L-RBK_like, L-ribulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	16	2614634-2614734	15	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	TGGGTTCGATTCCCATCATCCGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|60aa|up_2|NC_016023.1_2604000_2604180_+,NA|43aa|down_9|NC_016023.1_2625848_2625977_-	NA|137aa|up_9|NC_016023.1_2593197_2593608_+	smart00344, HTH_ASNC, helix_turn_helix ASNC type	NA|109aa|up_8|NC_016023.1_2595475_2595802_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|69aa|up_7|NC_016023.1_2595817_2596024_+	TIGR00003, COP-associated_protein, copper ion binding protein	NA|805aa|up_6|NC_016023.1_2596117_2598532_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|356aa|up_5|NC_016023.1_2600767_2601835_+	pfam07854, DUF1646, Protein of unknown function (DUF1646)	NA|230aa|up_4|NC_016023.1_2601972_2602662_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|302aa|up_3|NC_016023.1_2602752_2603658_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|60aa|up_2|NC_016023.1_2604000_2604180_+	NA	NA|388aa|up_1|NC_016023.1_2604503_2605667_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|69aa|up_0|NC_016023.1_2606562_2606769_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|308aa|down_0|NC_016023.1_2615232_2616156_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|444aa|down_1|NC_016023.1_2616421_2617753_+	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|582aa|down_2|NC_016023.1_2617754_2619500_+	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|268aa|down_3|NC_016023.1_2619496_2620300_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|273aa|down_4|NC_016023.1_2620339_2621158_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|485aa|down_5|NC_016023.1_2621735_2623190_+	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase	NA|368aa|down_6|NC_016023.1_2623186_2624290_+	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|53aa|down_7|NC_016023.1_2624618_2624777_-	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|297aa|down_8|NC_016023.1_2624838_2625729_-	cd01017, AdcA, Metal binding protein AdcA	NA|43aa|down_9|NC_016023.1_2625848_2625977_-	NA
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	17	2631865-2631945	16	CRISPRCasFinder	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	CCATTTGCGAATTGGATCTTGCAAAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|43aa|up_7|NC_016023.1_2625848_2625977_-,NA|83aa|up_4|NC_016023.1_2626943_2627192_-,NA	NA|53aa|up_9|NC_016023.1_2624618_2624777_-	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|297aa|up_8|NC_016023.1_2624838_2625729_-	cd01017, AdcA, Metal binding protein AdcA	NA|43aa|up_7|NC_016023.1_2625848_2625977_-	NA	NA|79aa|up_6|NC_016023.1_2626068_2626305_-	PRK00041, PRK00041, hypothetical protein; Validated	NA|150aa|up_5|NC_016023.1_2626421_2626871_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|83aa|up_4|NC_016023.1_2626943_2627192_-	NA	NA|154aa|up_3|NC_016023.1_2627360_2627822_+	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD	NA|269aa|up_2|NC_016023.1_2628460_2629267_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|257aa|up_1|NC_016023.1_2629253_2630024_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|336aa|up_0|NC_016023.1_2630063_2631071_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|512aa|down_0|NC_016023.1_2632052_2633588_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|181aa|down_1|NC_016023.1_2633805_2634348_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|351aa|down_2|NC_016023.1_2634354_2635407_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|130aa|down_3|NC_016023.1_2635890_2636280_+	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	NA|530aa|down_4|NC_016023.1_2636430_2638020_-	pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxykinase	NA|404aa|down_5|NC_016023.1_2638484_2639696_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|633aa|down_6|NC_016023.1_2639926_2641825_+	COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	NA|172aa|down_7|NC_016023.1_2642195_2642711_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|269aa|down_8|NC_016023.1_2642869_2643676_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|365aa|down_9|NC_016023.1_2643686_2644781_+	pfam10776, DUF2600, Protein of unknown function (DUF2600)
GCF_000169195.2_ASM16919v2	NC_016023	Bacillus coagulans 36D1, complete sequence	18	2795718-2795837	6	PILER-CR	no		DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	Orphan	TTCACCGGGTGGATGAAAGACAAAATG	27	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas14j,casR,RT,DinG,csa3,PrimPol,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	NA|66aa|up_2|NC_016023.1_2794226_2794424_+,NA|142aa|down_3|NC_016023.1_2801639_2802065_+	NA|471aa|up_9|NC_016023.1_2785465_2786878_+	pfam04932, Wzy_C, O-Antigen ligase	NA|164aa|up_8|NC_016023.1_2787304_2787796_+	TIGR03645, glyox_marine, lactoylglutathione lyase family protein	NA|329aa|up_7|NC_016023.1_2787810_2788797_+	cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|443aa|up_6|NC_016023.1_2788947_2790276_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|185aa|up_5|NC_016023.1_2790524_2791079_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|311aa|up_4|NC_016023.1_2792294_2793227_-	TIGR00745, Putative_2-dehydropantoate_2-reductase, 2-dehydropantoate 2-reductase	NA|222aa|up_3|NC_016023.1_2793275_2793941_-	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional	NA|66aa|up_2|NC_016023.1_2794226_2794424_+	NA	NA|112aa|up_1|NC_016023.1_2794549_2794885_+	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|232aa|up_0|NC_016023.1_2794877_2795573_+	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|113aa|down_0|NC_016023.1_2796023_2796362_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|298aa|down_1|NC_016023.1_2796869_2797763_+	pfam14358, DUF4405, Domain of unknown function (DUF4405)	NA|454aa|down_2|NC_016023.1_2800276_2801638_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|142aa|down_3|NC_016023.1_2801639_2802065_+	NA	NA|71aa|down_4|NC_016023.1_2802091_2802304_-	PRK02955, PRK02955, small acid-soluble spore protein SspI; Provisional	NA|252aa|down_5|NC_016023.1_2802408_2803164_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|346aa|down_6|NC_016023.1_2803799_2804837_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|805aa|down_7|NC_016023.1_2804849_2807264_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|312aa|down_8|NC_016023.1_2807656_2808592_-	PRK00996, PRK00996, ribonuclease HIII; Provisional	NA|97aa|down_9|NC_016023.1_2808692_2808983_+	PRK14126, PRK14126, cell division protein ZapA; Provisional
