assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000168635.2_ASM16863v2	NC_017545	Listeria monocytogenes J0161, complete sequence	1	514312-514890	1	CRT	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACT	33	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|158aa|down_0|NC_017545.1_515789_516263_+,NA|162aa|down_1|NC_017545.1_516282_516768_+,NA|89aa|down_3|NC_017545.1_517176_517443_+,NA|123aa|down_5|NC_017545.1_518268_518637_+,NA|91aa|down_7|NC_017545.1_520031_520304_+,NA|116aa|down_8|NC_017545.1_520331_520679_+,NA|81aa|down_9|NC_017545.1_521082_521325_+	NA|252aa|up_9|NC_017545.1_497898_498654_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NC_017545.1_498771_500931_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NC_017545.1_500927_502076_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NC_017545.1_502080_503028_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NC_017545.1_503183_504779_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NC_017545.1_504912_506196_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NC_017545.1_506196_507297_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NC_017545.1_507289_508840_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NC_017545.1_509659_511198_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|690aa|up_0|NC_017545.1_511449_513519_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NC_017545.1_515789_516263_+	NA	NA|162aa|down_1|NC_017545.1_516282_516768_+	NA	NA|102aa|down_2|NC_017545.1_516795_517101_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NC_017545.1_517176_517443_+	NA	NA|95aa|down_4|NC_017545.1_517983_518268_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_5|NC_017545.1_518268_518637_+	NA	NA|112aa|down_6|NC_017545.1_518633_518969_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|91aa|down_7|NC_017545.1_520031_520304_+	NA	NA|116aa|down_8|NC_017545.1_520331_520679_+	NA	NA|81aa|down_9|NC_017545.1_521082_521325_+	NA
GCF_000168635.2_ASM16863v2	NC_017545	Listeria monocytogenes J0161, complete sequence	2	553387-553669	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAG---TTACTTATTTTGAA----ATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT	36,29,29	0	0	NA	NA	NA:I-A:I-A	4,4,4	4	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|133aa|up_5|NC_017545.1_548375_548774_+,NA|193aa|down_0|NC_017545.1_554060_554639_+	NA|217aa|up_9|NC_017545.1_544438_545089_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NC_017545.1_545197_547258_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NC_017545.1_547261_547864_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NC_017545.1_547891_548359_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NC_017545.1_548375_548774_+	NA	NA|217aa|up_4|NC_017545.1_548784_549435_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NC_017545.1_549431_550478_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NC_017545.1_550493_550787_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NC_017545.1_550801_552073_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NC_017545.1_552212_553148_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NC_017545.1_554060_554639_+	NA	NA|227aa|down_1|NC_017545.1_554746_555427_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NC_017545.1_555451_555811_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NC_017545.1_555817_556276_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NC_017545.1_556657_558493_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NC_017545.1_558593_559025_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NC_017545.1_559071_560502_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NC_017545.1_560622_561438_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NC_017545.1_561789_562512_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NC_017545.1_562527_564216_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_000168635.2_ASM16863v2	NC_017545	Listeria monocytogenes J0161, complete sequence	3	568865-570900	2,2,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAA---CTACTTATTATGAA----ATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	36,29,29	2	2	569414-569449|570449-570484	NC_017545.1_2364997-2364962|NC_017545.1_2376518-2376553	NA:I-A:I-A	30,31,31	31	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|148aa|down_5|NC_017545.1_576447_576891_+,NA|492aa|down_9|NC_017545.1_581199_582675_+	NA|612aa|up_9|NC_017545.1_556657_558493_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NC_017545.1_558593_559025_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NC_017545.1_559071_560502_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NC_017545.1_560622_561438_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NC_017545.1_561789_562512_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NC_017545.1_562527_564216_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NC_017545.1_564205_565075_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NC_017545.1_565052_565835_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NC_017545.1_565902_568086_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NC_017545.1_568388_568667_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NC_017545.1_570972_571341_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NC_017545.1_571488_572904_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NC_017545.1_573035_574040_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NC_017545.1_574071_575388_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NC_017545.1_575589_576342_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NC_017545.1_576447_576891_+	NA	NA|554aa|down_6|NC_017545.1_576936_578598_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NC_017545.1_578853_580185_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NC_017545.1_580229_580970_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NC_017545.1_581199_582675_+	NA
GCF_000168635.2_ASM16863v2	NC_017545	Listeria monocytogenes J0161, complete sequence	4	2532876-2533037	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|140aa|up_7|NC_017545.1_2518160_2518580_-,NA|58aa|down_3|NC_017545.1_2535222_2535396_-	WYL|299aa|up_9|NC_017545.1_2516474_2517371_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NC_017545.1_2517415_2517985_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|NC_017545.1_2518160_2518580_-	NA	NA|1311aa|up_6|NC_017545.1_2519529_2523462_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NC_017545.1_2523476_2524421_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NC_017545.1_2524481_2527757_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NC_017545.1_2528139_2529048_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NC_017545.1_2529107_2529572_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NC_017545.1_2529587_2531969_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NC_017545.1_2532002_2532749_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NC_017545.1_2533111_2533345_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NC_017545.1_2533444_2534188_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NC_017545.1_2534370_2535090_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NC_017545.1_2535222_2535396_-	NA	NA|431aa|down_4|NC_017545.1_2535498_2536791_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NC_017545.1_2536926_2538459_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|337aa|down_6|NC_017545.1_2540586_2541597_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_7|NC_017545.1_2541628_2542675_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|448aa|down_8|NC_017545.1_2543116_2544460_-	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|309aa|down_9|NC_017545.1_2544618_2545545_-	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)
GCF_000168635.2_ASM16863v2	NC_017545	Listeria monocytogenes J0161, complete sequence	5	2732100-2733388	4,4,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Type II-C,Type II-B,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	36,36,36	2	2	2732333-2732362|2733257-2733286	NC_017545.1_2365027-2365056|NC_017545.1_2367051-2367080	II-A,II-B:II-A,II-B:II-A,II-B	19,19,18	19	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|236aa|up_7|NC_017545.1_2718604_2719312_+,NA|202aa|up_6|NC_017545.1_2719370_2719976_+,NA|121aa|up_0|NC_017545.1_2731211_2731574_-,NA|160aa|down_4|NC_017545.1_2739887_2740367_-	NA|141aa|up_9|NC_017545.1_2717726_2718149_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|142aa|up_8|NC_017545.1_2718164_2718590_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|236aa|up_7|NC_017545.1_2718604_2719312_+	NA	NA|202aa|up_6|NC_017545.1_2719370_2719976_+	NA	NA|388aa|up_5|NC_017545.1_2720038_2721202_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|343aa|up_4|NC_017545.1_2726930_2727959_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NC_017545.1_2728226_2729753_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NC_017545.1_2729794_2730646_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NC_017545.1_2730667_2731090_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NC_017545.1_2731211_2731574_-	NA	csn2|221aa|down_0|NC_017545.1_2733516_2734179_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NC_017545.1_2734168_2734510_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NC_017545.1_2734506_2735373_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NC_017545.1_2735373_2739378_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NC_017545.1_2739887_2740367_-	NA	NA|131aa|down_5|NC_017545.1_2740589_2740982_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NC_017545.1_2741003_2741441_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NC_017545.1_2741635_2742382_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NC_017545.1_2742387_2743185_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NC_017545.1_2743187_2744054_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
