assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000168595.2_ASM16859v2	NC_017547	Listeria monocytogenes Finland 1998, complete sequence	1	526833-527446	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	0	0	NA	NA	I-A:I-A:I-A	9,9,9	9	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|133aa|up_5|NC_017547.1_521822_522221_+,NA|193aa|down_0|NC_017547.1_527837_528416_+	NA|217aa|up_9|NC_017547.1_517885_518536_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NC_017547.1_518644_520705_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NC_017547.1_520708_521311_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NC_017547.1_521338_521806_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NC_017547.1_521822_522221_+	NA	NA|217aa|up_4|NC_017547.1_522231_522882_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NC_017547.1_522878_523925_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NC_017547.1_523940_524234_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NC_017547.1_524248_525520_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NC_017547.1_525659_526595_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NC_017547.1_527837_528416_+	NA	NA|227aa|down_1|NC_017547.1_528522_529203_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NC_017547.1_529227_529587_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NC_017547.1_529593_530052_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NC_017547.1_530433_532269_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NC_017547.1_532369_532801_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NC_017547.1_532847_534278_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NC_017547.1_534398_535214_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NC_017547.1_535566_536289_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NC_017547.1_536304_537993_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_000168595.2_ASM16859v2	NC_017547	Listeria monocytogenes Finland 1998, complete sequence	2	543872-547675	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	1	1	544879-544916	NC_017547.1_2340213-2340176	I-A:I-A:I-A	57,58,58	58	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|148aa|down_5|NC_017547.1_553222_553666_+,NA|492aa|down_9|NC_017547.1_557975_559451_+	NA|477aa|up_9|NC_017547.1_532847_534278_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|NC_017547.1_534398_535214_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|NC_017547.1_535566_536289_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|NC_017547.1_536304_537993_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|NC_017547.1_537982_538852_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|NC_017547.1_538829_539612_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|NC_017547.1_539679_541887_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|NC_017547.1_541900_542389_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|330aa|up_1|NC_017547.1_542401_543391_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|NC_017547.1_543395_543674_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NC_017547.1_547747_548116_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NC_017547.1_548262_549678_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NC_017547.1_549809_550814_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NC_017547.1_550845_552162_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NC_017547.1_552363_553116_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NC_017547.1_553222_553666_+	NA	NA|554aa|down_6|NC_017547.1_553711_555373_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NC_017547.1_555629_556961_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NC_017547.1_557005_557746_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NC_017547.1_557975_559451_+	NA
GCF_000168595.2_ASM16859v2	NC_017547	Listeria monocytogenes Finland 1998, complete sequence	3	2460608-2460769	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|140aa|up_7|NC_017547.1_2445895_2446315_-,NA|58aa|down_3|NC_017547.1_2462954_2463128_-	WYL|299aa|up_9|NC_017547.1_2444209_2445106_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NC_017547.1_2445150_2445720_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|NC_017547.1_2445895_2446315_-	NA	NA|1311aa|up_6|NC_017547.1_2447264_2451197_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NC_017547.1_2451211_2452156_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NC_017547.1_2452215_2455491_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NC_017547.1_2455874_2456783_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NC_017547.1_2456838_2457303_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NC_017547.1_2457318_2459700_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NC_017547.1_2459733_2460480_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NC_017547.1_2460843_2461077_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NC_017547.1_2461176_2461920_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NC_017547.1_2462102_2462822_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NC_017547.1_2462954_2463128_-	NA	NA|431aa|down_4|NC_017547.1_2463230_2464523_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NC_017547.1_2464658_2466191_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|NC_017547.1_2466192_2466948_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|NC_017547.1_2466993_2468184_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|NC_017547.1_2468318_2469329_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|NC_017547.1_2469360_2470407_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_000168595.2_ASM16859v2	NC_017547	Listeria monocytogenes Finland 1998, complete sequence	4	2717859-2717969	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|74aa|down_2|NC_017547.1_2718738_2718960_-,NA|52aa|down_4|NC_017547.1_2720900_2721056_+,NA|214aa|down_5|NC_017547.1_2721627_2722269_-	NA|330aa|up_9|NC_017547.1_2709784_2710774_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NC_017547.1_2710795_2711392_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NC_017547.1_2711395_2711770_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NC_017547.1_2711875_2712727_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NC_017547.1_2712845_2713685_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NC_017547.1_2713805_2714648_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NC_017547.1_2714693_2714939_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NC_017547.1_2714953_2715550_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NC_017547.1_2715658_2715976_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NC_017547.1_2716005_2717745_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NC_017547.1_2718071_2718536_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NC_017547.1_2718553_2718736_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NC_017547.1_2718738_2718960_-	NA	NA|455aa|down_3|NC_017547.1_2719094_2720459_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NC_017547.1_2720900_2721056_+	NA	NA|214aa|down_5|NC_017547.1_2721627_2722269_-	NA	NA|505aa|down_6|NC_017547.1_2722966_2724481_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NC_017547.1_2724596_2725535_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NC_017547.1_2725577_2726525_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NC_017547.1_2726666_2728406_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
