assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000166315.1_ASM16631v1	NC_014656	Bifidobacterium longum subsp. longum BBMN68, complete sequence	1	1827-2593	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTTTGCCCCGCATGCGCGGGGATGATCCG,GTTTGCCCCGCATGCGCGGGGATGATCCG,GTTTGCCCCGCATGCGCGGGGATGATCCG	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	11,12,12	12	Orphan	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|60aa|down_4|NC_014656.1_6504_6684_+,NA|71aa|down_6|NC_014656.1_7519_7732_+,NA|127aa|down_9|NC_014656.1_11995_12376_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|494aa|up_0|NC_014656.1_171_1653_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|285aa|down_0|NC_014656.1_2629_3484_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|172aa|down_1|NC_014656.1_3483_3999_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|66aa|down_2|NC_014656.1_4801_4999_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|418aa|down_3|NC_014656.1_5168_6422_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|60aa|down_4|NC_014656.1_6504_6684_+	NA	NA|76aa|down_5|NC_014656.1_7086_7314_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_6|NC_014656.1_7519_7732_+	NA	NA|501aa|down_7|NC_014656.1_9124_10627_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|down_8|NC_014656.1_10623_11409_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|127aa|down_9|NC_014656.1_11995_12376_+	NA
GCF_000166315.1_ASM16631v1	NC_014656	Bifidobacterium longum subsp. longum BBMN68, complete sequence	2	4051-4446	2,2,2	CRT,CRISPRCasFinder,PILER-CR	no		DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTTTGCCCCGCACGCGCGGGGATGATCCG,GTTTGCCCCGCACGCGCGGGGATGATCCG,GTTTGCCCCGCACGCGCGGGGATGATCCG	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	6,5,3	6	Orphan	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|60aa|down_2|NC_014656.1_6504_6684_+,NA|71aa|down_4|NC_014656.1_7519_7732_+,NA|127aa|down_7|NC_014656.1_11995_12376_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|494aa|up_2|NC_014656.1_171_1653_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|285aa|up_1|NC_014656.1_2629_3484_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|172aa|up_0|NC_014656.1_3483_3999_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|66aa|down_0|NC_014656.1_4801_4999_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|418aa|down_1|NC_014656.1_5168_6422_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|60aa|down_2|NC_014656.1_6504_6684_+	NA	NA|76aa|down_3|NC_014656.1_7086_7314_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_4|NC_014656.1_7519_7732_+	NA	NA|501aa|down_5|NC_014656.1_9124_10627_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|down_6|NC_014656.1_10623_11409_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|127aa|down_7|NC_014656.1_11995_12376_+	NA	NA|407aa|down_8|NC_014656.1_12758_13979_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|95aa|down_9|NC_014656.1_14256_14541_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed
GCF_000166315.1_ASM16631v1	NC_014656	Bifidobacterium longum subsp. longum BBMN68, complete sequence	3	4537-4686	3	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTTTGCCCCGCACGCGCGGGGATGATCCG	29	0	0	NA	NA	I-C,I-E,II-B	2	2	Orphan	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|60aa|down_2|NC_014656.1_6504_6684_+,NA|71aa|down_4|NC_014656.1_7519_7732_+,NA|127aa|down_7|NC_014656.1_11995_12376_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|494aa|up_2|NC_014656.1_171_1653_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|285aa|up_1|NC_014656.1_2629_3484_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|172aa|up_0|NC_014656.1_3483_3999_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|66aa|down_0|NC_014656.1_4801_4999_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|418aa|down_1|NC_014656.1_5168_6422_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|60aa|down_2|NC_014656.1_6504_6684_+	NA	NA|76aa|down_3|NC_014656.1_7086_7314_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_4|NC_014656.1_7519_7732_+	NA	NA|501aa|down_5|NC_014656.1_9124_10627_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|down_6|NC_014656.1_10623_11409_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|127aa|down_7|NC_014656.1_11995_12376_+	NA	NA|407aa|down_8|NC_014656.1_12758_13979_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|95aa|down_9|NC_014656.1_14256_14541_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed
GCF_000166315.1_ASM16631v1	NC_014656	Bifidobacterium longum subsp. longum BBMN68, complete sequence	4	102296-102375	4	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GCGACGCGTTCCCGGGAATGTTGCGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|140aa|up_8|NC_014656.1_93467_93887_-,NA|754aa|down_3|NC_014656.1_105088_107350_-,NA|277aa|down_7|NC_014656.1_115462_116293_-	NA|329aa|up_9|NC_014656.1_92356_93343_+	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|140aa|up_8|NC_014656.1_93467_93887_-	NA	NA|226aa|up_7|NC_014656.1_94312_94990_-	pfam05154, TM2, TM2 domain	NA|122aa|up_6|NC_014656.1_95039_95405_+	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|102aa|up_5|NC_014656.1_95503_95809_-	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	NA|811aa|up_4|NC_014656.1_95880_98313_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|218aa|up_3|NC_014656.1_98443_99097_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|341aa|up_2|NC_014656.1_99339_100362_+	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|262aa|up_1|NC_014656.1_100403_101189_-	pfam14512, TM1586_NiRdase, Putative TM nitroreductase	NA|256aa|up_0|NC_014656.1_101434_102202_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|422aa|down_0|NC_014656.1_102420_103686_+	cd00609, AAT_like, Aspartate aminotransferase family	NA|262aa|down_1|NC_014656.1_103733_104519_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|131aa|down_2|NC_014656.1_104575_104968_-	pfam17425, Arylsulfotran_N, Arylsulfotransferase Ig-like domain	NA|754aa|down_3|NC_014656.1_105088_107350_-	NA	NA|1208aa|down_4|NC_014656.1_107447_111071_+	sd00006, TPR, Tetratricopeptide repeat	NA|921aa|down_5|NC_014656.1_111135_113898_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|372aa|down_6|NC_014656.1_114073_115189_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|277aa|down_7|NC_014656.1_115462_116293_-	NA	NA|272aa|down_8|NC_014656.1_116910_117726_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|712aa|down_9|NC_014656.1_117836_119972_+	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins
GCF_000166315.1_ASM16631v1	NC_014656	Bifidobacterium longum subsp. longum BBMN68, complete sequence	5	421553-421756	5	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGTGCCGGTGCCGTTCGAACCGGT	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|59aa|up_8|NC_014656.1_409399_409576_-,NA|219aa|up_7|NC_014656.1_409925_410582_-,NA|46aa|up_4|NC_014656.1_415201_415339_-,NA|71aa|up_2|NC_014656.1_418479_418692_+,NA	NA|281aa|up_9|NC_014656.1_408236_409079_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|59aa|up_8|NC_014656.1_409399_409576_-	NA	NA|219aa|up_7|NC_014656.1_409925_410582_-	NA	NA|501aa|up_6|NC_014656.1_411815_413318_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|up_5|NC_014656.1_413314_414100_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|46aa|up_4|NC_014656.1_415201_415339_-	NA	NA|72aa|up_3|NC_014656.1_416810_417026_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|71aa|up_2|NC_014656.1_418479_418692_+	NA	NA|421aa|up_1|NC_014656.1_418804_420067_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|426aa|up_0|NC_014656.1_420203_421481_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|312aa|down_0|NC_014656.1_422621_423557_-	pfam00892, EamA, EamA-like transporter family	NA|135aa|down_1|NC_014656.1_423835_424240_+	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|432aa|down_2|NC_014656.1_424269_425565_-	pfam18096, Thump_like, THUMP domain-like	NA|282aa|down_3|NC_014656.1_425633_426479_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|317aa|down_4|NC_014656.1_426593_427544_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|282aa|down_5|NC_014656.1_427639_428485_+	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold	NA|988aa|down_6|NC_014656.1_428527_431491_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|166aa|down_7|NC_014656.1_431933_432431_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|585aa|down_8|NC_014656.1_432427_434182_+	pfam03772, Competence, Competence protein	NA|449aa|down_9|NC_014656.1_434321_435668_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site
GCF_000166315.1_ASM16631v1	NC_014656	Bifidobacterium longum subsp. longum BBMN68, complete sequence	6	2046160-2046245	6	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CTCCGCGCCCGCACGCTCAGGGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|243aa|up_1|NC_014656.1_2043351_2044080_-,NA|211aa|down_4|NC_014656.1_2053244_2053877_+,NA|30aa|down_5|NC_014656.1_2054068_2054158_+,NA|51aa|down_8|NC_014656.1_2056351_2056504_+	NA|133aa|up_9|NC_014656.1_2032838_2033237_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|332aa|up_8|NC_014656.1_2033317_2034313_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|181aa|up_7|NC_014656.1_2034412_2034955_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|304aa|up_6|NC_014656.1_2035036_2035948_-	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|727aa|up_5|NC_014656.1_2036169_2038350_+	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|267aa|up_4|NC_014656.1_2038556_2039357_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|523aa|up_3|NC_014656.1_2040166_2041735_+	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|348aa|up_2|NC_014656.1_2042267_2043311_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|243aa|up_1|NC_014656.1_2043351_2044080_-	NA	NA|356aa|up_0|NC_014656.1_2044287_2045355_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|158aa|down_0|NC_014656.1_2048703_2049177_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|388aa|down_1|NC_014656.1_2049178_2050342_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|375aa|down_2|NC_014656.1_2050439_2051564_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|513aa|down_3|NC_014656.1_2051578_2053117_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|211aa|down_4|NC_014656.1_2053244_2053877_+	NA	NA|30aa|down_5|NC_014656.1_2054068_2054158_+	NA	NA|233aa|down_6|NC_014656.1_2054310_2055009_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|297aa|down_7|NC_014656.1_2055139_2056030_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|51aa|down_8|NC_014656.1_2056351_2056504_+	NA	NA|539aa|down_9|NC_014656.1_2056662_2058279_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed
GCF_000166315.1_ASM16631v1	NC_014656	Bifidobacterium longum subsp. longum BBMN68, complete sequence	7	2265338-2265915	3,7,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTTTGCCCCGCATGCGCGGGGATGATCCG,GTTTGCCCCGCATGCGCGGGGATGATCCG,GTTTGCCCCGCATGCGCGGGGATGATCCG	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	8,9,9	9	TypeI-E	DEDDh,WYL,cas3,csa3,casR,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|404aa|up_9|NC_014656.1_2249908_2251120_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|1104aa|up_8|NC_014656.1_2251713_2255025_+	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	cas3|1071aa|up_7|NC_014656.1_2255426_2258639_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|569aa|up_6|NC_014656.1_2258625_2260332_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|221aa|up_5|NC_014656.1_2260343_2261006_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|392aa|up_4|NC_014656.1_2261138_2262314_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|267aa|up_3|NC_014656.1_2262321_2263122_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|228aa|up_2|NC_014656.1_2263118_2263802_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|338aa|up_1|NC_014656.1_2263798_2264812_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|121aa|up_0|NC_014656.1_2264879_2265242_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
