assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000165505.1_ASM16550v1	NC_014632	Ilyobacter polytropus DSM 2926, complete sequence	1	359115-359374	1	PILER-CR	no		csa3,DEDDh,DinG,cas3	Orphan	AGAAGCTTGTATTGCATGTGGAGCATGTGAAGGAACTTGTCCAGTATCAGC	51	1	1	359166-359198	NC_014632.1_359375-359407	NA	2	2	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas2,cas1,cas9,PD-DExK	NA,NA|261aa|down_0|NC_014632.1_359885_360668_+,NA|164aa|down_8|NC_014632.1_370218_370710_+,NA|144aa|down_9|NC_014632.1_370836_371268_+	NA|98aa|up_9|NC_014632.1_351382_351676_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|275aa|up_8|NC_014632.1_352188_353013_-	pfam03502, Channel_Tsx, Nucleoside-specific channel-forming protein, Tsx	NA|272aa|up_7|NC_014632.1_353430_354246_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|159aa|up_6|NC_014632.1_354379_354856_+	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|75aa|up_5|NC_014632.1_354998_355223_+	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|74aa|up_4|NC_014632.1_355310_355532_+	pfam04023, FeoA, FeoA domain	NA|738aa|up_3|NC_014632.1_355565_357779_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|54aa|up_2|NC_014632.1_357802_357964_+	pfam12669, P12, Virus attachment protein p12 family	NA|96aa|up_1|NC_014632.1_358092_358380_+	pfam10087, DUF2325, Uncharacterized protein conserved in bacteria (DUF2325)	NA|111aa|up_0|NC_014632.1_358399_358732_+	pfam09633, DUF2023, Protein of unknown function (DUF2023)	NA|261aa|down_0|NC_014632.1_359885_360668_+	NA	NA|373aa|down_1|NC_014632.1_361066_362185_+	pfam04303, PrpF, PrpF protein	NA|332aa|down_2|NC_014632.1_362233_363229_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|160aa|down_3|NC_014632.1_363294_363774_+	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|505aa|down_4|NC_014632.1_363788_365303_+	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|805aa|down_5|NC_014632.1_365652_368067_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|260aa|down_6|NC_014632.1_368053_368833_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|249aa|down_7|NC_014632.1_369512_370259_+	cd16833, YfiH, protein of unknown function YfiH	NA|164aa|down_8|NC_014632.1_370218_370710_+	NA	NA|144aa|down_9|NC_014632.1_370836_371268_+	NA
GCF_000165505.1_ASM16550v1	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	1	271811-271951	1	CRISPRCasFinder	no		WYL,DEDDh,cas2,cas1,cas9,csa3	Orphan	AACCCCCGACAAGGCCCTCAACCTTGCGCGTCTACCATTCCGCCACC	47	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas2,cas1,cas9,PD-DExK	NA|592aa|up_0|NC_014633.1_269677_271453_+,NA	NA|278aa|up_9|NC_014633.1_259807_260641_+	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|282aa|up_8|NC_014633.1_260847_261693_+	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|282aa|up_7|NC_014633.1_261707_262553_+	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|up_6|NC_014633.1_262614_263376_+	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|226aa|up_5|NC_014633.1_263429_264107_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|232aa|up_4|NC_014633.1_264133_264829_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|332aa|up_3|NC_014633.1_265085_266081_+	pfam04519, Bactofilin, Polymer-forming cytoskeletal	NA|154aa|up_2|NC_014633.1_266218_266680_+	COG5005, COG5005, Mu-like prophage protein gpG [General function prediction only]	NA|888aa|up_1|NC_014633.1_266907_269571_+	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms]	NA|592aa|up_0|NC_014633.1_269677_271453_+	NA	NA|417aa|down_0|NC_014633.1_272026_273277_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|499aa|down_1|NC_014633.1_273412_274909_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|191aa|down_2|NC_014633.1_275130_275703_-	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|333aa|down_3|NC_014633.1_275690_276689_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|465aa|down_4|NC_014633.1_276704_278099_-	PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional	NA|237aa|down_5|NC_014633.1_278101_278812_-	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|376aa|down_6|NC_014633.1_278859_279987_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|171aa|down_7|NC_014633.1_280005_280518_-	pfam00731, AIRC, AIR carboxylase	NA|1242aa|down_8|NC_014633.1_280551_284277_-	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II	NA|555aa|down_9|NC_014633.1_284524_286189_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase
GCF_000165505.1_ASM16550v1	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	2	744582-745934	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	WYL,DEDDh,cas2,cas1,cas9,csa3	 Type II-B,Type II-A, or Type II-C?,Type II-C,Type II-B	GTTGTACTTCCCTAATTATTTTAGCTATGTTACAAT,GTTGTACTTCCCTAATTATTTTAGCTATGTTACAAT,GTTGTACTTCCCTAATTATTTTAGCTATGTTACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	20,20,19	20	TypeII-B,TypeII-A,orTypeII-C?,TypeII-C,TypeII-B	csa3,DEDDh,DinG,cas3,WYL,cas2,cas1,cas9,PD-DExK	NA|113aa|up_2|NC_014633.1_742155_742494_+,NA	NA|448aa|up_9|NC_014633.1_732776_734120_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|465aa|up_8|NC_014633.1_734204_735599_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|391aa|up_7|NC_014633.1_736391_737564_+	pfam07905, PucR, Purine catabolism regulatory protein-like family	NA|309aa|up_6|NC_014633.1_737745_738672_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|360aa|up_5|NC_014633.1_738743_739823_+	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase	NA|308aa|up_4|NC_014633.1_739885_740809_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|261aa|up_3|NC_014633.1_740893_741676_-	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|113aa|up_2|NC_014633.1_742155_742494_+	NA	NA|189aa|up_1|NC_014633.1_742623_743190_-	PRK00529, PRK00529, elongation factor P; Validated	NA|387aa|up_0|NC_014633.1_743308_744469_-	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP	cas2|103aa|down_0|NC_014633.1_746033_746342_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|down_1|NC_014633.1_746346_747249_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1093aa|down_2|NC_014633.1_747262_750541_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|453aa|down_3|NC_014633.1_750837_752196_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|151aa|down_4|NC_014633.1_752183_752636_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|171aa|down_5|NC_014633.1_752841_753354_+	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|154aa|down_6|NC_014633.1_753421_753883_-	cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif	NA|217aa|down_7|NC_014633.1_753931_754582_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|65aa|down_8|NC_014633.1_754793_754988_-	pfam14056, DUF4250, Domain of unknown function (DUF4250)	NA|295aa|down_9|NC_014633.1_755078_755963_-	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
GCF_000165505.1_ASM16550v1	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	3	793061-793157	3	CRISPRCasFinder	no	csa3	WYL,DEDDh,cas2,cas1,cas9,csa3	Type I-A	CCGAAGGAGTAAAACTCTCAGGTA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas2,cas1,cas9,PD-DExK	NA|152aa|up_9|NC_014633.1_780989_781445_-,NA|94aa|down_3|NC_014633.1_797442_797724_+	NA|152aa|up_9|NC_014633.1_780989_781445_-	NA	NA|73aa|up_8|NC_014633.1_781825_782044_+	TIGR01439, Uncharacterized_protein_Mb2626, looped-hinge helix DNA binding domain, AbrB family	NA|825aa|up_7|NC_014633.1_782065_784540_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|213aa|up_6|NC_014633.1_784796_785435_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|222aa|up_5|NC_014633.1_785523_786189_+	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|428aa|up_4|NC_014633.1_786321_787605_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|465aa|up_3|NC_014633.1_787907_789302_-	cd09129, PLDc_unchar2_1, Putative catalytic domain, repeat 1, of uncharacterized phospholipase D-like proteins	NA|196aa|up_2|NC_014633.1_789489_790077_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|264aa|up_1|NC_014633.1_790199_790991_+	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|248aa|up_0|NC_014633.1_792082_792826_-	pfam14279, HNH_5, HNH endonuclease	NA|354aa|down_0|NC_014633.1_793285_794347_+	cd06502, TA_like, Low-specificity threonine aldolase (TA)	NA|465aa|down_1|NC_014633.1_794400_795795_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|446aa|down_2|NC_014633.1_795836_797174_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|94aa|down_3|NC_014633.1_797442_797724_+	NA	NA|235aa|down_4|NC_014633.1_797761_798466_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|down_5|NC_014633.1_798462_799134_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|280aa|down_6|NC_014633.1_799183_800023_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|134aa|down_7|NC_014633.1_800607_801009_-	smart00782, PhnA_Zn_Ribbon, PhnA Zinc-Ribbon	NA|371aa|down_8|NC_014633.1_801254_802367_+	PRK09954, PRK09954, sugar kinase	NA|313aa|down_9|NC_014633.1_802342_803281_+	pfam04227, Indigoidine_A, Indigoidine synthase A like protein
