assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000163615.3_ASM16361v3	NC_017846	Aggregatibacter actinomycetemcomitans D7S-1, complete sequence	1	191760-192122	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	 Type I-U?,Type I-C,Type I-U	ATTTCAACACACAGCCACCCGAAGGTGGCTGC,ATTTCAACACACAGCCACCCGAAGGTGGCTGC,ATTTCAACACACAGCCACCCGAAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	5,5,4	5	TypeI-U?,TypeI-C,TypeI-U	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	NA,NA	NA|96aa|up_9|NC_017846.2_177685_177973_-	PRK00199, ihfB, integration host factor subunit beta; Reviewed	NA|549aa|up_8|NC_017846.2_178034_179681_-	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|226aa|up_7|NC_017846.2_179778_180456_-	PRK00023, cmk, (d)CMP kinase	NA|298aa|up_6|NC_017846.2_180448_181342_-	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|789aa|up_5|NC_017846.2_181634_184001_+	pfam07715, Plug, TonB-dependent Receptor Plug Domain	NA|925aa|up_4|NC_017846.2_184078_186853_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|111aa|up_3|NC_017846.2_186919_187252_-	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]	NA|243aa|up_2|NC_017846.2_187252_187981_-	TIGR00346, Uncharacterized_membrane_protein_HI_1738, 4-azaleucine resistance probable transporter AzlC	NA|311aa|up_1|NC_017846.2_187985_188918_-	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold	NA|759aa|up_0|NC_017846.2_189208_191485_+	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	cas2|98aa|down_0|NC_017846.2_192313_192607_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NC_017846.2_192610_193624_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|216aa|down_2|NC_017846.2_195578_196226_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|298aa|down_3|NC_017846.2_196401_197295_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|678aa|down_4|NC_017846.2_197316_199350_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|260aa|down_5|NC_017846.2_199346_200126_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|822aa|down_6|NC_017846.2_200134_202600_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|978aa|down_7|NC_017846.2_202799_205733_+	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|100aa|down_8|NC_017846.2_205768_206068_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|117aa|down_9|NC_017846.2_206064_206415_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000163615.3_ASM16361v3	NC_017846	Aggregatibacter actinomycetemcomitans D7S-1, complete sequence	2	274752-283929	2,2,2,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	Orphan	CTTCACTGCCGAATAGGCAGCTTAGAAA,CTTCACTGCCGAATAGGCAGCTTAGAAA,CTTCACTGCCGAATAGGCAGCTTAGAAA,CTTCACTGCCGAATAGGCAGCTTAGAAA,CTTCACTGCCGAATAGGCAGCTTAGAAA	28,28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F:I-F	147,152,152,147,147	152	Orphan	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	NA|168aa|up_7|NC_017846.2_266548_267052_-,NA|54aa|up_2|NC_017846.2_271823_271985_+,NA	NA|222aa|up_9|NC_017846.2_265233_265899_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|218aa|up_8|NC_017846.2_265895_266549_-	PRK06265, PRK06265, cobalt transporter CbiM	NA|168aa|up_7|NC_017846.2_266548_267052_-	NA	NA|231aa|up_6|NC_017846.2_267933_268626_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|224aa|up_5|NC_017846.2_268642_269314_-	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|574aa|up_4|NC_017846.2_269322_271044_-	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|228aa|up_3|NC_017846.2_271056_271740_-	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional	NA|54aa|up_2|NC_017846.2_271823_271985_+	NA	NA|343aa|up_1|NC_017846.2_271977_273006_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|503aa|up_0|NC_017846.2_273062_274571_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|34aa|down_0|NC_017846.2_284024_284126_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|92aa|down_1|NC_017846.2_284382_284658_+	pfam13276, HTH_21, HTH-like domain	NA|99aa|down_2|NC_017846.2_284638_284935_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|448aa|down_3|NC_017846.2_285762_287106_-	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters	NA|268aa|down_4|NC_017846.2_287123_287927_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|277aa|down_5|NC_017846.2_288190_289021_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|385aa|down_6|NC_017846.2_289950_291105_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|368aa|down_7|NC_017846.2_291104_292208_-	cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2	NA|380aa|down_8|NC_017846.2_292168_293308_-	cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins	NA|57aa|down_9|NC_017846.2_295530_295701_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein
GCF_000163615.3_ASM16361v3	NC_017846	Aggregatibacter actinomycetemcomitans D7S-1, complete sequence	3	2005956-2006451	5,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3HD,cas5,cas7,cas4	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	Unclear	GTTTCAACACACAGCCACCCGAAGGTGGCTGC,GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC,GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC	32,32,32	1	1	2006185-2006219	NC_017846.2_2178416-2178450	NA:NA:NA	6,7,7	7	Unclear	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL,cas8f,cas5f,cas7f,cas6f,cas3-cas2,PD-DExK,cas3HD,DinG	NA|194aa|up_8|NC_017846.2_1993133_1993715_+,NA|248aa|up_0|NC_017846.2_2004541_2005285_+,NA	NA|959aa|up_9|NC_017846.2_1990227_1993104_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|194aa|up_8|NC_017846.2_1993133_1993715_+	NA	NA|314aa|up_7|NC_017846.2_1993711_1994653_+	pfam16162, DUF4868, Domain of unknown function (DUF4868)	NA|579aa|up_6|NC_017846.2_1994666_1996403_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|345aa|up_5|NC_017846.2_1996529_1997564_+	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|906aa|up_4|NC_017846.2_1997560_2000278_+	pfam04851, ResIII, Type III restriction enzyme, res subunit	cas5|225aa|up_3|NC_017846.2_2000392_2001067_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|289aa|up_2|NC_017846.2_2002853_2003720_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|217aa|up_1|NC_017846.2_2003864_2004515_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|248aa|up_0|NC_017846.2_2004541_2005285_+	NA	NA|127aa|down_0|NC_017846.2_2006786_2007167_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|335aa|down_1|NC_017846.2_2007188_2008193_+	TIGR01276, Thiamine-binding_periplasmic_protein, thiamine ABC transporter, periplasmic binding protein	NA|543aa|down_2|NC_017846.2_2008201_2009830_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|216aa|down_3|NC_017846.2_2009813_2010461_+	COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]	NA|335aa|down_4|NC_017846.2_2010506_2011511_+	TIGR00433, biotin_synthase, biotin synthase	NA|160aa|down_5|NC_017846.2_2012225_2012705_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|915aa|down_6|NC_017846.2_2012708_2015453_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|206aa|down_7|NC_017846.2_2015545_2016163_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|447aa|down_8|NC_017846.2_2016175_2017516_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|556aa|down_9|NC_017846.2_2018012_2019680_-	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed
