bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	3.1|716508|33|NC_022113|CRISPRCasFinder	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	96.97	33	1	0	1	33	966296	966328	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA	966296-966328	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	3.1|716508|33|NC_022113|CRISPRCasFinder	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	93.94	33	2	0	1	33	2309212	2309180	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	9e-08	47.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA	2309180-2309212	TGAGTCCCAACAAAGAGAAATTGGATTCCCAAT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	5.1|840179|26|NC_022113|CRISPRCasFinder	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	92.31	26	2	0	1	26	2051928	2051953	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGTGG	2051928-2051953	CGCGGCCCCAACACAGAAGCTGGCGG	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	5.1|840179|26|NC_022113|CRISPRCasFinder	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	92.31	26	2	0	1	26	2114181	2114206	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGTGG	2114181-2114206	CGGGGCCCCAACACAAAAGCTGGCGG	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.1|1933801|37|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.59	37	2	0	1	37	729775	729811	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	2e-09	53.9	1.0	CCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAG	729775-729811	CCAACTTGCACATTATTGTAAGCTGGCGGAAAGTCAG	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.1|1933801|37|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.59	37	2	0	1	37	729833	729869	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	2e-09	53.9	1.0	CCAACTTGCACATTATTGTAAGCTGACAGAAAGTCAG	729833-729869	CCAACTTGCACATTATTGTAAGCTGGCGGAAAGTCAG	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	263014	262981	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	262981-263014	ATTTCGAAAAGAAATTCTACAGGCAATGCAAGTT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	342821	342788	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	342788-342821	ATTTCGAAAAGAAATTCTACAAACAATGCAAGTT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	683374	683341	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	683341-683374	ATTTCGAAAAGAAATTCTACAAACAATGCAAGTT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	716547	716580	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	716547-716580	AACTTGCATTGCCTGTAGAATTTCTTTTCGAAAT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	992453	992486	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	992453-992486	AACTTGCATTGCCTGTAGAATTTCTTTTCGAAAT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	1718032	1717999	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	1717999-1718032	ATTTCAAAAAGAAATTCTACAGACAATGCAAGTT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	2274768	2274801	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	2274768-2274801	AACTTGCATTGTCTGTAGAATTTCTTTTTGAAAT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	9.2|1933859|34|NC_022113|CRT	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	94.12	34	2	0	1	34	2415108	2415075	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	4e-08	49.1	1.0	AACTTGCATTGTCTGTAGAATTTCCTTTCGAAAT	2415075-2415108	ATTTCAAAAAGAAATTCTACAGACAATGCAAGTT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	13.1|2750777|32|NC_022113|CRISPRCasFinder	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	96.88	32	1	0	1	32	2309180	2309149	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	2309149-2309180	AGAAATTCTACAGGCAATGCGAGTTGGGGTGT	1
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	13.1|2750777|32|NC_022113|CRISPRCasFinder	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	93.75	32	2	0	1	32	716540	716571	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	2e-07	46.0	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	716540-716571	ACACCCCAACTTGCATTGCCTGTAGAATTTCT	2
NC_022113	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	13.1|2750777|32|NC_022113|CRISPRCasFinder	NC_022113.1	Staphylococcus aureus subsp. aureus 55/2053, complete sequence	93.75	32	2	0	1	32	966386	966417	564019-564111|628748-628847|716482-716566|774814-774893|840149-840234|1141663-1141755|1881813-1881903|1923117-1923200|1933780-1933971|2158915-2159004|2177929-2178130|2236461-2236586|2750751-2750834	2e-07	46.0	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	966386-966417	ACACCCCAACTTGCATTGCCTGTAGAATTTCT	2
