assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000159155.2_ASM15915v2	NC_014644	Gardnerella vaginalis ATCC 14019, complete sequence	1	418194-418331	1	PILER-CR	no		cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	Orphan	CCTCGTCAGGGCGGCGGTAATGGC	24	0	0	NA	NA	NA	2	2	Orphan	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	NA|318aa|up_1|NC_014644.1_414971_415925_-,NA|159aa|down_4|NC_014644.1_425769_426246_+	NA|227aa|up_9|NC_014644.1_404529_405210_+	PRK10847, PRK10847, DedA family protein	NA|90aa|up_8|NC_014644.1_405355_405625_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|915aa|up_7|NC_014644.1_406059_408804_+	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|286aa|up_6|NC_014644.1_408930_409788_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|322aa|up_5|NC_014644.1_409842_410808_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|224aa|up_4|NC_014644.1_410839_411511_+	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins	NA|464aa|up_3|NC_014644.1_411620_413012_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|445aa|up_2|NC_014644.1_413190_414525_+	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)	NA|318aa|up_1|NC_014644.1_414971_415925_-	NA	NA|350aa|up_0|NC_014644.1_416145_417195_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|194aa|down_0|NC_014644.1_420385_420967_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|401aa|down_1|NC_014644.1_421003_422206_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|446aa|down_2|NC_014644.1_422295_423633_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|355aa|down_3|NC_014644.1_423941_425006_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|159aa|down_4|NC_014644.1_425769_426246_+	NA	NA|234aa|down_5|NC_014644.1_426254_426956_+	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases	NA|394aa|down_6|NC_014644.1_427239_428421_+	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|329aa|down_7|NC_014644.1_428503_429490_+	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC	NA|336aa|down_8|NC_014644.1_429486_430494_+	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA	NA|260aa|down_9|NC_014644.1_430523_431303_+	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional
GCF_000159155.2_ASM15915v2	NC_014644	Gardnerella vaginalis ATCC 14019, complete sequence	2	836407-838265	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	Type I-E	GTATTTCCCGCATACGCGGGGGTGATCC,GTATTTCCCGCATACGCGGGGGTGATCC,GTATTTCCCGCATACGCGGGGGTGATCC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	29,30,30	30	TypeI-E	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	NA|99aa|up_7|NC_014644.1_825183_825480_+,NA|110aa|down_0|NC_014644.1_838419_838749_-,NA|54aa|down_1|NC_014644.1_838759_838921_-,NA|105aa|down_2|NC_014644.1_839047_839362_-	NA|830aa|up_9|NC_014644.1_818695_821185_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|727aa|up_8|NC_014644.1_821325_823506_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|99aa|up_7|NC_014644.1_825183_825480_+	NA	cas8e|557aa|up_6|NC_014644.1_829178_830849_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|205aa|up_5|NC_014644.1_830871_831486_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|363aa|up_4|NC_014644.1_831580_832669_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|292aa|up_3|NC_014644.1_832727_833603_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NC_014644.1_833603_834251_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|314aa|up_1|NC_014644.1_834276_835218_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|360aa|up_0|NC_014644.1_835219_836299_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|110aa|down_0|NC_014644.1_838419_838749_-	NA	NA|54aa|down_1|NC_014644.1_838759_838921_-	NA	NA|105aa|down_2|NC_014644.1_839047_839362_-	NA	NA|311aa|down_3|NC_014644.1_840136_841069_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|234aa|down_4|NC_014644.1_841168_841870_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|348aa|down_5|NC_014644.1_841869_842913_-	cd01171, YXKO-related, B	NA|395aa|down_6|NC_014644.1_843254_844439_+	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|271aa|down_7|NC_014644.1_844533_845346_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|315aa|down_8|NC_014644.1_845335_846280_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|300aa|down_9|NC_014644.1_846282_847182_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
GCF_000159155.2_ASM15915v2	NC_014644	Gardnerella vaginalis ATCC 14019, complete sequence	3	1124196-1124273	2	CRISPRCasFinder	no		cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	Orphan	TTGAGCTACAAAACCCGTCAATCT	24	0	0	NA	NA	NA	1	1	Orphan	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	NA|182aa|up_4|NC_014644.1_1119355_1119901_-,NA	NA|1042aa|up_9|NC_014644.1_1109402_1112528_-	cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38)	NA|417aa|up_8|NC_014644.1_1112954_1114205_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|701aa|up_7|NC_014644.1_1114383_1116486_-	PRK05667, dnaG, DNA primase; Validated	NA|428aa|up_6|NC_014644.1_1116545_1117829_-	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|452aa|up_5|NC_014644.1_1117873_1119229_-	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|182aa|up_4|NC_014644.1_1119355_1119901_-	NA	NA|167aa|up_3|NC_014644.1_1119961_1120462_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|558aa|up_2|NC_014644.1_1120644_1122318_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|282aa|up_1|NC_014644.1_1122307_1123153_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|323aa|up_0|NC_014644.1_1123161_1124130_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|561aa|down_0|NC_014644.1_1124337_1126020_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|312aa|down_1|NC_014644.1_1126438_1127374_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|198aa|down_2|NC_014644.1_1127389_1127983_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|588aa|down_3|NC_014644.1_1128077_1129841_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|257aa|down_4|NC_014644.1_1130293_1131064_+	PRK13318, PRK13318, type III pantothenate kinase	NA|497aa|down_5|NC_014644.1_1131103_1132594_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|636aa|down_6|NC_014644.1_1132605_1134513_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|274aa|down_7|NC_014644.1_1134621_1135443_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|331aa|down_8|NC_014644.1_1135509_1136502_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|309aa|down_9|NC_014644.1_1136662_1137589_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold
GCF_000159155.2_ASM15915v2	NC_014644	Gardnerella vaginalis ATCC 14019, complete sequence	4	1470299-1470405	3	CRISPRCasFinder	no		cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	Orphan	TAAAGTCCAGTGGACTTTATGTGC	24	0	0	NA	NA	NA	1	1	Orphan	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	NA|830aa|up_8|NC_014644.1_1442569_1445059_-,NA|254aa|up_4|NC_014644.1_1455814_1456576_-,NA|239aa|down_2|NC_014644.1_1478505_1479222_-	NA|1116aa|up_9|NC_014644.1_1439125_1442473_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|830aa|up_8|NC_014644.1_1442569_1445059_-	NA	NA|224aa|up_7|NC_014644.1_1445555_1446227_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|1391aa|up_6|NC_014644.1_1446314_1450487_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|1639aa|up_5|NC_014644.1_1450479_1455396_-	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|254aa|up_4|NC_014644.1_1455814_1456576_-	NA	NA|2677aa|up_3|NC_014644.1_1456688_1464719_-	TIGR04264, hypothetical_protein_SAO11_2114, hyperosmolarity resistance protein Ebh, N-terminal domain	NA|383aa|up_2|NC_014644.1_1464863_1466012_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|619aa|up_1|NC_014644.1_1466217_1468074_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|482aa|up_0|NC_014644.1_1468674_1470120_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|1340aa|down_0|NC_014644.1_1470632_1474652_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1189aa|down_1|NC_014644.1_1474739_1478306_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|239aa|down_2|NC_014644.1_1478505_1479222_-	NA	NA|228aa|down_3|NC_014644.1_1479276_1479960_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|316aa|down_4|NC_014644.1_1479971_1480919_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|246aa|down_5|NC_014644.1_1481380_1482118_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|228aa|down_6|NC_014644.1_1484956_1485640_-	PRK00015, rnhB, ribonuclease HII; Validated	NA|123aa|down_7|NC_014644.1_1486570_1486939_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|517aa|down_8|NC_014644.1_1487192_1488743_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|583aa|down_9|NC_014644.1_1488851_1490600_-	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
