assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000155515.2_ASM15551v2	NC_022112	Lactobacillus paracasei subsp. paracasei 8700:2, complete sequence	1	265694-265838	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Orphan	GGGGTCCTTATGAGCAGGTTTCTGCGCCTGTTTGCGCGTTTCGAAA	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|115aa|up_7|NC_022112.1_256919_257264_+,NA|111aa|down_4|NC_022112.1_269553_269886_+	NA|523aa|up_9|NC_022112.1_253567_255136_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|451aa|up_8|NC_022112.1_255320_256673_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|115aa|up_7|NC_022112.1_256919_257264_+	NA	NA|240aa|up_6|NC_022112.1_257337_258057_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|266aa|up_5|NC_022112.1_258053_258851_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|284aa|up_4|NC_022112.1_258918_259770_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|294aa|up_3|NC_022112.1_259766_260648_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|600aa|up_2|NC_022112.1_260644_262444_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|365aa|up_1|NC_022112.1_262572_263667_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|460aa|up_0|NC_022112.1_263817_265197_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|225aa|down_0|NC_022112.1_265938_266613_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|253aa|down_1|NC_022112.1_267057_267816_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|261aa|down_2|NC_022112.1_267900_268683_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|248aa|down_3|NC_022112.1_268701_269445_+	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|111aa|down_4|NC_022112.1_269553_269886_+	NA	NA|200aa|down_5|NC_022112.1_270176_270776_-	TIGR02227, Inactive_signal_peptidase_IA	NA|313aa|down_6|NC_022112.1_270853_271792_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|516aa|down_7|NC_022112.1_272171_273719_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|247aa|down_8|NC_022112.1_273878_274619_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|105aa|down_9|NC_022112.1_279985_280300_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains
GCF_000155515.2_ASM15551v2	NC_022112	Lactobacillus paracasei subsp. paracasei 8700:2, complete sequence	2	638198-638313	2	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Orphan	CTTTGGTCGTTTAGGTTCGAGGTCCTTATGC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|48aa|up_0|NC_022112.1_637938_638082_+,NA|78aa|down_1|NC_022112.1_639215_639449_-,NA|60aa|down_5|NC_022112.1_642558_642738_+,NA|175aa|down_6|NC_022112.1_642815_643340_+,NA|354aa|down_9|NC_022112.1_645271_646333_-	NA|227aa|up_9|NC_022112.1_627894_628575_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NC_022112.1_628596_629535_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NC_022112.1_629649_630651_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NC_022112.1_630689_631208_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NC_022112.1_631252_631681_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NC_022112.1_631685_632462_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NC_022112.1_632906_633533_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NC_022112.1_633593_634715_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NC_022112.1_634714_637840_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NC_022112.1_637938_638082_+	NA	NA|159aa|down_0|NC_022112.1_638745_639222_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NC_022112.1_639215_639449_-	NA	NA|368aa|down_2|NC_022112.1_639791_640895_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NC_022112.1_641105_641891_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NC_022112.1_641893_642562_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NC_022112.1_642558_642738_+	NA	NA|175aa|down_6|NC_022112.1_642815_643340_+	NA	NA|211aa|down_7|NC_022112.1_643572_644205_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NC_022112.1_644276_645098_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NC_022112.1_645271_646333_-	NA
GCF_000155515.2_ASM15551v2	NC_022112	Lactobacillus paracasei subsp. paracasei 8700:2, complete sequence	3	1823765-1823885	3	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Orphan	CGGTTTCTAAACGCGTTCGCCACCCCAGAAACC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|100aa|up_5|NC_022112.1_1818888_1819188_+,NA|146aa|down_5|NC_022112.1_1828443_1828881_-	NA|585aa|up_9|NC_022112.1_1812842_1814597_-	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|389aa|up_8|NC_022112.1_1814920_1816087_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|427aa|up_7|NC_022112.1_1816070_1817351_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|394aa|up_6|NC_022112.1_1817362_1818544_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|100aa|up_5|NC_022112.1_1818888_1819188_+	NA	NA|277aa|up_4|NC_022112.1_1819188_1820019_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|188aa|up_3|NC_022112.1_1820166_1820730_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|273aa|up_2|NC_022112.1_1820842_1821661_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|380aa|up_1|NC_022112.1_1821720_1822860_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|202aa|up_0|NC_022112.1_1822938_1823544_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|155aa|down_0|NC_022112.1_1824270_1824735_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|down_1|NC_022112.1_1824727_1825180_-	PRK04351, PRK04351, SprT family protein	NA|251aa|down_2|NC_022112.1_1825321_1826074_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|down_3|NC_022112.1_1826066_1826966_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|down_4|NC_022112.1_1826962_1827958_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|down_5|NC_022112.1_1828443_1828881_-	NA	NA|887aa|down_6|NC_022112.1_1829017_1831678_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|down_7|NC_022112.1_1831985_1833143_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_8|NC_022112.1_1833362_1834190_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|down_9|NC_022112.1_1834192_1835386_-	pfam00144, Beta-lactamase, Beta-lactamase
GCF_000155515.2_ASM15551v2	NC_022112	Lactobacillus paracasei subsp. paracasei 8700:2, complete sequence	4	2192491-2193845	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	20,20,17	20	TypeII-C,TypeII-A,TypeII-B	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA|367aa|up_0|NC_022112.1_2190783_2191884_-,NA|265aa|down_4|NC_022112.1_2200159_2200954_-,NA|389aa|down_5|NC_022112.1_2200954_2202121_-,NA|108aa|down_7|NC_022112.1_2202912_2203236_+	NA|444aa|up_9|NC_022112.1_2177971_2179303_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|473aa|up_8|NC_022112.1_2179508_2180927_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|up_7|NC_022112.1_2181093_2181660_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NC_022112.1_2181786_2183235_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NC_022112.1_2183406_2185245_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NC_022112.1_2185696_2186554_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NC_022112.1_2186691_2188323_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NC_022112.1_2188319_2190011_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NC_022112.1_2190207_2190633_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NC_022112.1_2190783_2191884_-	NA	csn2|226aa|down_0|NC_022112.1_2193869_2194547_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NC_022112.1_2194543_2194849_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NC_022112.1_2194826_2195732_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1363aa|down_3|NC_022112.1_2195922_2200011_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|265aa|down_4|NC_022112.1_2200159_2200954_-	NA	NA|389aa|down_5|NC_022112.1_2200954_2202121_-	NA	NA|125aa|down_6|NC_022112.1_2202344_2202719_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_7|NC_022112.1_2202912_2203236_+	NA	NA|576aa|down_8|NC_022112.1_2203307_2205035_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_9|NC_022112.1_2205015_2206758_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
GCF_000155515.2_ASM15551v2	NC_022114	Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence	1	542-698	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGT	37	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,RT,csn2,cas2,cas1,cas9	NA,NA|62aa|down_1|NC_022114.1_1958_2144_+,NA|93aa|down_3|NC_022114.1_2810_3089_-,NA|76aa|down_4|NC_022114.1_3111_3339_-,NA|109aa|down_6|NC_022114.1_5738_6065_+,NA|205aa|down_7|NC_022114.1_6078_6693_+,NA|121aa|down_9|NC_022114.1_7050_7413_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|94aa|down_0|NC_022114.1_1630_1912_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|62aa|down_1|NC_022114.1_1958_2144_+	NA	NA|227aa|down_2|NC_022114.1_2140_2821_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|93aa|down_3|NC_022114.1_2810_3089_-	NA	NA|76aa|down_4|NC_022114.1_3111_3339_-	NA	NA|688aa|down_5|NC_022114.1_3591_5655_+	pfam03389, MobA_MobL, MobA/MobL family	NA|109aa|down_6|NC_022114.1_5738_6065_+	NA	NA|205aa|down_7|NC_022114.1_6078_6693_+	NA	NA|112aa|down_8|NC_022114.1_6694_7030_+	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system	NA|121aa|down_9|NC_022114.1_7050_7413_+	NA
