assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	1	335149-335260	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	6	335222-335238|335222-335238|335222-335238|335222-335238|335222-335238|335222-335238	NC_022350.1_845572-845556|NC_022350.1_1194554-1194570|NC_022350.1_1218638-1218622|NC_022350.1_2425214-2425230|NC_022350.1_2799795-2799811|NC_022350.1_4033789-4033805	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|86aa|up_9|NC_022350.1_323084_323342_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|398aa|up_8|NC_022350.1_323658_324852_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_7|NC_022350.1_324887_326570_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_6|NC_022350.1_326586_328782_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_5|NC_022350.1_328895_330029_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_4|NC_022350.1_330025_330646_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_3|NC_022350.1_330742_331324_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_2|NC_022350.1_331253_331979_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_1|NC_022350.1_332068_332989_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_0|NC_022350.1_333028_333457_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|884aa|down_0|NC_022350.1_336828_339480_-	pfam00934, PE, PE family	NA|835aa|down_1|NC_022350.1_339729_342234_-	pfam00934, PE, PE family	NA|537aa|down_2|NC_022350.1_342524_344135_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NC_022350.1_344158_345067_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|614aa|down_4|NC_022350.1_345344_347186_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NC_022350.1_347182_348799_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NC_022350.1_348795_352788_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NC_022350.1_352784_353093_+	pfam00934, PE, PE family	NA|514aa|down_8|NC_022350.1_353095_354637_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NC_022350.1_354685_354979_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	2	340883-341821	1,2	CRT,PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NNNNNNCCGCCGGCGCCGCCG,ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	21,43	2	7	341741-341767|341786-341803|341786-341803|341786-341803|341786-341803|341786-341803|341786-341803	NC_022350.1_338987-339013|NC_022350.1_339032-339049|NC_022350.1_677619-677636|NC_022350.1_1222186-1222169|NC_022350.1_2425420-2425437|NC_022350.1_3733430-3733447|NC_022350.1_3734795-3734812	NA:NA	15,2	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|561aa|up_9|NC_022350.1_324887_326570_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NC_022350.1_326586_328782_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NC_022350.1_328895_330029_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NC_022350.1_330025_330646_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NC_022350.1_330742_331324_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NC_022350.1_331253_331979_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NC_022350.1_332068_332989_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NC_022350.1_333028_333457_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|936aa|up_1|NC_022350.1_333757_336565_-	pfam00934, PE, PE family	NA|884aa|up_0|NC_022350.1_336828_339480_-	pfam00934, PE, PE family	NA|537aa|down_0|NC_022350.1_342524_344135_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NC_022350.1_344158_345067_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|614aa|down_2|NC_022350.1_345344_347186_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NC_022350.1_347182_348799_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NC_022350.1_348795_352788_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NC_022350.1_352784_353093_+	pfam00934, PE, PE family	NA|514aa|down_6|NC_022350.1_353095_354637_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NC_022350.1_354685_354979_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NC_022350.1_355008_355299_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NC_022350.1_355309_356197_+	pfam14011, ESX-1_EspG, EspG family
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	3	369624-370322	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369912-369953|369987-370019	NC_022350.1_377943-377984|NC_022350.1_376758-376790	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NC_022350.1_366636_366939_+,NA|161aa|down_1|NC_022350.1_379732_380215_-,NA|410aa|down_5|NC_022350.1_382331_383561_+	NA|262aa|up_9|NC_022350.1_361331_362117_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NC_022350.1_362105_362909_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NC_022350.1_362918_364316_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NC_022350.1_364494_366270_+	pfam00934, PE, PE family	NA|76aa|up_5|NC_022350.1_366412_366640_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_022350.1_366636_366939_+	NA	NA|74aa|up_3|NC_022350.1_366986_367208_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_022350.1_367204_367630_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_022350.1_367765_368398_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_022350.1_368394_369303_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NC_022350.1_379073_379745_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NC_022350.1_379732_380215_-	NA	NA|239aa|down_2|NC_022350.1_380272_380989_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NC_022350.1_381090_381747_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NC_022350.1_381816_382308_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NC_022350.1_382331_383561_+	NA	NA|621aa|down_6|NC_022350.1_383715_385578_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NC_022350.1_385649_386036_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NC_022350.1_386038_386674_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NC_022350.1_386761_387646_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	4	696486-696562	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NC_022350.1_682381_682789_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NC_022350.1_682848_683535_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NC_022350.1_683688_686322_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NC_022350.1_686344_688732_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NC_022350.1_688869_689592_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NC_022350.1_689588_690386_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NC_022350.1_690387_691275_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NC_022350.1_691280_692495_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NC_022350.1_693518_694964_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NC_022350.1_694960_696397_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_022350.1_697697_699248_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_022350.1_699299_699692_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_022350.1_699688_699946_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_022350.1_700128_701364_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_022350.1_701614_702028_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_022350.1_702024_702261_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_022350.1_702364_702871_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|177aa|down_7|NC_022350.1_702984_703515_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_022350.1_703498_704260_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_022350.1_704316_704628_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	5	930093-931040	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	930876-930911|930876-930911|930876-930911	NC_022350.1_679583-679548|NC_022350.1_1218919-1218954|NC_022350.1_2425527-2425492	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_022350.1_935041_935593_-	NA|214aa|up_9|NC_022350.1_917121_917763_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|685aa|up_8|NC_022350.1_917820_919875_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|339aa|up_7|NC_022350.1_921206_922223_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_022350.1_922384_923026_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_022350.1_923106_924162_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_022350.1_924213_924606_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_022350.1_924663_925086_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_2|NC_022350.1_925442_926348_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NC_022350.1_926366_927182_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NC_022350.1_928423_928837_+	pfam00934, PE, PE family	NA|880aa|down_0|NC_022350.1_931309_933949_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_022350.1_934416_935061_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_022350.1_935041_935593_-	NA	NA|218aa|down_3|NC_022350.1_935742_936396_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NC_022350.1_936466_937495_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NC_022350.1_938183_938954_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NC_022350.1_939040_939853_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NC_022350.1_939920_940781_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|431aa|down_8|NC_022350.1_941575_942868_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NC_022350.1_942851_943856_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	6	1217111-1217976	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	8	1217494-1217515|1217539-1217554|1217677-1217698|1217677-1217698|1217932-1217953|1217932-1217953|1217932-1217953|1217932-1217953	NC_022350.1_2955818-2955797|NC_022350.1_2087868-2087853|NC_022350.1_842536-842557|NC_022350.1_1222814-1222835|NC_022350.1_628330-628351|NC_022350.1_37143-37122|NC_022350.1_132233-132254|NC_022350.1_2917569-2917590	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NC_022350.1_1212543_1212810_+,NA|61aa|down_2|NC_022350.1_1220394_1220577_+,NA|35aa|down_3|NC_022350.1_1220686_1220791_+	NA|465aa|up_9|NC_022350.1_1206877_1208272_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NC_022350.1_1208473_1209196_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NC_022350.1_1209227_1210394_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NC_022350.1_1210464_1210959_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NC_022350.1_1211144_1211579_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NC_022350.1_1211680_1212547_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NC_022350.1_1212543_1212810_+	NA	NA|674aa|up_2|NC_022350.1_1212796_1214818_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NC_022350.1_1214916_1215645_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NC_022350.1_1215755_1216544_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NC_022350.1_1219209_1219530_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|56aa|down_1|NC_022350.1_1220215_1220383_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_2|NC_022350.1_1220394_1220577_+	NA	NA|35aa|down_3|NC_022350.1_1220686_1220791_+	NA	NA|152aa|down_4|NC_022350.1_1220768_1221224_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_5|NC_022350.1_1221638_1224200_+	pfam00934, PE, PE family	NA|313aa|down_6|NC_022350.1_1224417_1225356_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NC_022350.1_1225743_1227024_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NC_022350.1_1227128_1227956_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NC_022350.1_1228166_1229468_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	7	1572806-1573878	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NC_022350.1_1564569_1564887_+,NA	NA|103aa|up_9|NC_022350.1_1562084_1562393_+	pfam00934, PE, PE family	NA|540aa|up_8|NC_022350.1_1562389_1564009_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NC_022350.1_1564569_1564887_+	NA	NA|209aa|up_6|NC_022350.1_1565021_1565648_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NC_022350.1_1565713_1566046_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NC_022350.1_1566061_1567318_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NC_022350.1_1567445_1568657_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NC_022350.1_1568729_1570208_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NC_022350.1_1570204_1571590_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NC_022350.1_1571667_1572702_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NC_022350.1_1574731_1575133_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NC_022350.1_1575129_1575387_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NC_022350.1_1575469_1576429_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NC_022350.1_1576453_1577416_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|246aa|down_4|NC_022350.1_1577414_1578152_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NC_022350.1_1578232_1580200_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NC_022350.1_1580217_1581042_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NC_022350.1_1581210_1581693_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NC_022350.1_1581764_1582589_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NC_022350.1_1582785_1583724_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	8	2087538-2087792	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2087619-2087636|2087619-2087636|2087709-2087726	NC_022350.1_404239-404222|NC_022350.1_611809-611792|NC_022350.1_3443928-3443911	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_022350.1_2086897_2087161_-,NA	NA|165aa|up_9|NC_022350.1_2073303_2073798_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|211aa|up_8|NC_022350.1_2074134_2074767_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NC_022350.1_2075125_2077951_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_022350.1_2078177_2079038_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_022350.1_2079078_2079945_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_022350.1_2079949_2081836_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_022350.1_2081851_2083885_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_022350.1_2084004_2086230_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_022350.1_2086505_2086901_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_022350.1_2086897_2087161_-	NA	NA|346aa|down_0|NC_022350.1_2088929_2089967_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_022350.1_2089966_2091334_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NC_022350.1_2091507_2092947_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NC_022350.1_2092979_2094431_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_022350.1_2094460_2095411_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_022350.1_2095425_2095842_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_022350.1_2096119_2096542_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NC_022350.1_2096590_2096893_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_022350.1_2096889_2097204_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_022350.1_2097203_2098937_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	9	2168545-2168764	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NC_022350.1_2151738_2152209_-,NA|136aa|up_2|NC_022350.1_2159236_2159644_-,NA|127aa|down_5|NC_022350.1_2176202_2176583_-	NA|157aa|up_9|NC_022350.1_2151738_2152209_-	NA	NA|155aa|up_8|NC_022350.1_2152548_2153013_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NC_022350.1_2153202_2155425_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NC_022350.1_2155462_2155906_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NC_022350.1_2156019_2156613_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NC_022350.1_2157402_2158407_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NC_022350.1_2158506_2159259_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NC_022350.1_2159236_2159644_-	NA	NA|767aa|up_1|NC_022350.1_2159778_2162079_+	PLN02892, PLN02892, isocitrate lyase	NA|1598aa|up_0|NC_022350.1_2162248_2167042_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_022350.1_2170713_2171178_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_022350.1_2171275_2172139_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_022350.1_2172176_2173448_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_022350.1_2173719_2174835_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_022350.1_2174825_2176166_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_022350.1_2176202_2176583_-	NA	NA|621aa|down_6|NC_022350.1_2176739_2178602_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_022350.1_2178609_2179089_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_022350.1_2179325_2180099_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NC_022350.1_2180892_2181537_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	10	3113245-3114090	3,6,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	10,11,11	11	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_7|NC_022350.1_3106524_3106779_-,NA|135aa|up_6|NC_022350.1_3106926_3107331_+,NA|64aa|up_5|NC_022350.1_3107327_3107519_+,NA|86aa|up_4|NC_022350.1_3109105_3109363_+,NA|104aa|up_3|NC_022350.1_3109467_3109779_+,NA|203aa|up_2|NC_022350.1_3110198_3110807_+,NA	NA|348aa|up_9|NC_022350.1_3104839_3105883_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_8|NC_022350.1_3106073_3106349_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_7|NC_022350.1_3106524_3106779_-	NA	NA|135aa|up_6|NC_022350.1_3106926_3107331_+	NA	NA|64aa|up_5|NC_022350.1_3107327_3107519_+	NA	NA|86aa|up_4|NC_022350.1_3109105_3109363_+	NA	NA|104aa|up_3|NC_022350.1_3109467_3109779_+	NA	NA|203aa|up_2|NC_022350.1_3110198_3110807_+	NA	NA|470aa|up_1|NC_022350.1_3110877_3112287_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_022350.1_3112283_3113096_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NC_022350.1_3114129_3115391_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|down_1|NC_022350.1_3115983_3117245_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_2|NC_022350.1_3119122_3119464_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_3|NC_022350.1_3119464_3120481_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_4|NC_022350.1_3120493_3121741_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_5|NC_022350.1_3121737_3122865_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_6|NC_022350.1_3122861_3123770_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_7|NC_022350.1_3123750_3124461_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_8|NC_022350.1_3124470_3124845_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_9|NC_022350.1_3124841_3127280_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	11	3115486-3115957	4,7,5	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	4,5,6	6	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NC_022350.1_3106524_3106779_-,NA|135aa|up_7|NC_022350.1_3106926_3107331_+,NA|64aa|up_6|NC_022350.1_3107327_3107519_+,NA|86aa|up_5|NC_022350.1_3109105_3109363_+,NA|104aa|up_4|NC_022350.1_3109467_3109779_+,NA|203aa|up_3|NC_022350.1_3110198_3110807_+,NA	NA|92aa|up_9|NC_022350.1_3106073_3106349_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NC_022350.1_3106524_3106779_-	NA	NA|135aa|up_7|NC_022350.1_3106926_3107331_+	NA	NA|64aa|up_6|NC_022350.1_3107327_3107519_+	NA	NA|86aa|up_5|NC_022350.1_3109105_3109363_+	NA	NA|104aa|up_4|NC_022350.1_3109467_3109779_+	NA	NA|203aa|up_3|NC_022350.1_3110198_3110807_+	NA	NA|470aa|up_2|NC_022350.1_3110877_3112287_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NC_022350.1_3112283_3113096_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NC_022350.1_3114129_3115391_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|down_0|NC_022350.1_3115983_3117245_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NC_022350.1_3119122_3119464_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NC_022350.1_3119464_3120481_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_3|NC_022350.1_3120493_3121741_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NC_022350.1_3121737_3122865_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NC_022350.1_3122861_3123770_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NC_022350.1_3123750_3124461_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NC_022350.1_3124470_3124845_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NC_022350.1_3124841_3127280_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_9|NC_022350.1_3127276_3128065_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	12	3117280-3119074	8,6,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	24,24,23	24	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NC_022350.1_3106524_3106779_-,NA|135aa|up_8|NC_022350.1_3106926_3107331_+,NA|64aa|up_7|NC_022350.1_3107327_3107519_+,NA|86aa|up_6|NC_022350.1_3109105_3109363_+,NA|104aa|up_5|NC_022350.1_3109467_3109779_+,NA|203aa|up_4|NC_022350.1_3110198_3110807_+,NA	NA|85aa|up_9|NC_022350.1_3106524_3106779_-	NA	NA|135aa|up_8|NC_022350.1_3106926_3107331_+	NA	NA|64aa|up_7|NC_022350.1_3107327_3107519_+	NA	NA|86aa|up_6|NC_022350.1_3109105_3109363_+	NA	NA|104aa|up_5|NC_022350.1_3109467_3109779_+	NA	NA|203aa|up_4|NC_022350.1_3110198_3110807_+	NA	NA|470aa|up_3|NC_022350.1_3110877_3112287_+	pfam00665, rve, Integrase core domain	NA|271aa|up_2|NC_022350.1_3112283_3113096_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_1|NC_022350.1_3114129_3115391_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|up_0|NC_022350.1_3115983_3117245_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NC_022350.1_3119122_3119464_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_022350.1_3119464_3120481_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_2|NC_022350.1_3120493_3121741_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_022350.1_3121737_3122865_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_022350.1_3122861_3123770_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_022350.1_3123750_3124461_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_022350.1_3124470_3124845_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_022350.1_3124841_3127280_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_8|NC_022350.1_3127276_3128065_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NC_022350.1_3128398_3128944_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	13	3735662-3736341	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|94aa|up_0|NC_022350.1_3732965_3733247_+,NA|96aa|down_4|NC_022350.1_3750382_3750670_-	NA|290aa|up_9|NC_022350.1_3718465_3719335_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_8|NC_022350.1_3719355_3720366_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_7|NC_022350.1_3720638_3721283_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_6|NC_022350.1_3721349_3722579_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_5|NC_022350.1_3722861_3724211_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_4|NC_022350.1_3724222_3725362_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_3|NC_022350.1_3725358_3726090_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|1948aa|up_2|NC_022350.1_3726098_3731942_-	pfam00823, PPE, PPE family	NA|339aa|up_1|NC_022350.1_3731990_3733007_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|94aa|up_0|NC_022350.1_3732965_3733247_+	NA	NA|86aa|down_0|NC_022350.1_3738252_3738510_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NC_022350.1_3738765_3748239_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NC_022350.1_3748864_3749311_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NC_022350.1_3749347_3750088_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NC_022350.1_3750382_3750670_-	NA	NA|130aa|down_5|NC_022350.1_3764153_3764543_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_6|NC_022350.1_3764556_3764850_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_7|NC_022350.1_3764846_3765692_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_8|NC_022350.1_3765815_3766091_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_9|NC_022350.1_3766087_3766345_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	14	3929217-3930161	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGNNNCGGCGGCNCCGGCGGC	24	0	0	NA	NA	NA	12	12	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|1211aa|down_2|NC_022350.1_3939028_3942661_+,NA|280aa|down_6|NC_022350.1_3950255_3951095_+	NA|351aa|up_9|NC_022350.1_3913600_3914653_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NC_022350.1_3914652_3915855_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NC_022350.1_3915874_3916717_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NC_022350.1_3916751_3917516_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NC_022350.1_3917741_3918695_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NC_022350.1_3918719_3918911_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NC_022350.1_3919125_3920328_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NC_022350.1_3920352_3921474_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NC_022350.1_3921544_3923053_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1505aa|up_0|NC_022350.1_3923223_3927738_+	pfam00934, PE, PE family	NA|516aa|down_0|NC_022350.1_3933924_3935472_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|down_1|NC_022350.1_3935468_3936305_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1211aa|down_2|NC_022350.1_3939028_3942661_+	NA	NA|1199aa|down_3|NC_022350.1_3943491_3947088_+	pfam00934, PE, PE family	NA|549aa|down_4|NC_022350.1_3947648_3949295_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_5|NC_022350.1_3949368_3950160_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_6|NC_022350.1_3950255_3951095_+	NA	NA|399aa|down_7|NC_022350.1_3951149_3952346_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_8|NC_022350.1_3952374_3953085_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|344aa|down_9|NC_022350.1_3953149_3954181_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	15	3945783-3946941	9	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCANCGGCGGCNCCGGCGGNNNCGGCGGC	37	5	10	3946066-3946109|3946147-3946178|3946216-3946268|3946306-3946364|3946672-3946697|3946672-3946697|3946672-3946697|3946672-3946697|3946672-3946697|3946672-3946697	NC_022350.1_3945457-3945500|NC_022350.1_3945538-3945569|NC_022350.1_3945607-3945659|NC_022350.1_3945697-3945755|NC_022350.1_3938306-3938331|NC_022350.1_3938651-3938676|NC_022350.1_3938996-3939021|NC_022350.1_3939341-3939366|NC_022350.1_3939686-3939711|NC_022350.1_3945529-3945554	NA	14	14	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|1211aa|up_0|NC_022350.1_3939028_3942661_+,NA|280aa|down_2|NC_022350.1_3950255_3951095_+	NA|318aa|up_9|NC_022350.1_3917741_3918695_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NC_022350.1_3918719_3918911_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NC_022350.1_3919125_3920328_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NC_022350.1_3920352_3921474_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NC_022350.1_3921544_3923053_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1505aa|up_4|NC_022350.1_3923223_3927738_+	pfam00934, PE, PE family	NA|1910aa|up_3|NC_022350.1_3928028_3933758_+	pfam00934, PE, PE family	NA|516aa|up_2|NC_022350.1_3933924_3935472_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NC_022350.1_3935468_3936305_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1211aa|up_0|NC_022350.1_3939028_3942661_+	NA	NA|549aa|down_0|NC_022350.1_3947648_3949295_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NC_022350.1_3949368_3950160_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NC_022350.1_3950255_3951095_+	NA	NA|399aa|down_3|NC_022350.1_3951149_3952346_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NC_022350.1_3952374_3953085_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|344aa|down_5|NC_022350.1_3953149_3954181_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|335aa|down_6|NC_022350.1_3954252_3955257_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NC_022350.1_3955272_3956337_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NC_022350.1_3957579_3958611_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NC_022350.1_3958624_3959149_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_000153685.2_ASM15368v2	NC_022350	Mycobacterium tuberculosis str. Haarlem, complete sequence	16	4107232-4107320	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_022350.1_4097818_4098589_-,NA|233aa|up_0|NC_022350.1_4106336_4107035_-,NA|126aa|down_6|NC_022350.1_4112555_4112933_+	NA|388aa|up_9|NC_022350.1_4093489_4094653_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_022350.1_4094649_4095702_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_022350.1_4096200_4097064_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_022350.1_4097818_4098589_-	NA	NA|549aa|up_5|NC_022350.1_4098585_4100232_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NC_022350.1_4100228_4101092_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_022350.1_4101084_4102011_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_022350.1_4102012_4103638_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_022350.1_4104345_4106301_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_022350.1_4106336_4107035_-	NA	NA|173aa|down_0|NC_022350.1_4107380_4107899_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_022350.1_4107899_4108883_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_022350.1_4108875_4110069_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_022350.1_4110074_4110896_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|216aa|down_4|NC_022350.1_4111027_4111675_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_022350.1_4111710_4112448_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_022350.1_4112555_4112933_+	NA	NA|225aa|down_7|NC_022350.1_4113031_4113706_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_022350.1_4113809_4114604_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_022350.1_4114610_4115066_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
