assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000148875.1_ASM14887v1	NC_014555	Helicobacter pylori PeCan4, complete genome	1	336156-336265	1	CRISPRCasFinder	no		cas3,cas14j,cas2,DEDDh	Orphan	AGGCTCTCTAGCGTTACTGAAGAAAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,cas2,DEDDh	NA|113aa|up_0|NC_014555.1_335434_335773_+,NA|24aa|down_0|NC_014555.1_337022_337094_+,NA|262aa|down_1|NC_014555.1_337410_338196_+	NA|181aa|up_9|NC_014555.1_328722_329265_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_8|NC_014555.1_329197_330136_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_7|NC_014555.1_330132_330915_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_6|NC_014555.1_331163_332156_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_5|NC_014555.1_332179_332986_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_4|NC_014555.1_332982_333216_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|271aa|up_3|NC_014555.1_333215_334028_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_2|NC_014555.1_334024_334429_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|227aa|up_1|NC_014555.1_334560_335241_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|113aa|up_0|NC_014555.1_335434_335773_+	NA	NA|24aa|down_0|NC_014555.1_337022_337094_+	NA	NA|262aa|down_1|NC_014555.1_337410_338196_+	NA	NA|365aa|down_2|NC_014555.1_338185_339280_+	COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|294aa|down_3|NC_014555.1_339324_340206_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_4|NC_014555.1_340205_341756_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_5|NC_014555.1_341764_343381_-	PRK05380, pyrG, CTP synthetase; Validated	NA|221aa|down_6|NC_014555.1_343636_344299_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_7|NC_014555.1_344342_346046_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_8|NC_014555.1_346064_347096_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|260aa|down_9|NC_014555.1_347082_347862_+	PRK06669, fliH, flagellar assembly protein H; Validated
GCF_000148875.1_ASM14887v1	NC_014555	Helicobacter pylori PeCan4, complete genome	2	537331-537481	2	CRISPRCasFinder	no		cas3,cas14j,cas2,DEDDh	Orphan	TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC	49	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,cas2,DEDDh	NA|304aa|up_9|NC_014555.1_524449_525361_+,NA|238aa|up_8|NC_014555.1_525441_526155_-,NA|380aa|up_7|NC_014555.1_526151_527291_-,NA|371aa|up_6|NC_014555.1_527301_528414_-,NA|143aa|up_5|NC_014555.1_528430_528859_-,NA|269aa|up_4|NC_014555.1_528913_529720_-,NA|76aa|up_0|NC_014555.1_533796_534024_-,NA|274aa|down_6|NC_014555.1_543645_544467_+,NA|146aa|down_7|NC_014555.1_544538_544976_-	NA|304aa|up_9|NC_014555.1_524449_525361_+	NA	NA|238aa|up_8|NC_014555.1_525441_526155_-	NA	NA|380aa|up_7|NC_014555.1_526151_527291_-	NA	NA|371aa|up_6|NC_014555.1_527301_528414_-	NA	NA|143aa|up_5|NC_014555.1_528430_528859_-	NA	NA|269aa|up_4|NC_014555.1_528913_529720_-	NA	NA|984aa|up_3|NC_014555.1_529721_532673_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|208aa|up_2|NC_014555.1_532681_533305_-	pfam16567, CagD, Pathogenicity island component CagD	NA|116aa|up_1|NC_014555.1_533306_533654_-	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system	NA|76aa|up_0|NC_014555.1_533796_534024_-	NA	NA|256aa|down_0|NC_014555.1_538482_539250_-	TIGR00067, Glutamate_racemase, glutamate racemase	NA|439aa|down_1|NC_014555.1_539288_540605_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|68aa|down_2|NC_014555.1_540874_541078_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|288aa|down_3|NC_014555.1_541102_541966_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|228aa|down_4|NC_014555.1_541978_542662_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|325aa|down_5|NC_014555.1_542674_543649_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|274aa|down_6|NC_014555.1_543645_544467_+	NA	NA|146aa|down_7|NC_014555.1_544538_544976_-	NA	NA|313aa|down_8|NC_014555.1_545438_546377_-	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	NA|413aa|down_9|NC_014555.1_546399_547638_-	PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
GCF_000148875.1_ASM14887v1	NC_014555	Helicobacter pylori PeCan4, complete genome	3	729299-729438	3	CRISPRCasFinder	no		cas3,cas14j,cas2,DEDDh	Orphan	TCTTTAGTGTCGTTTTCTTTAAT	23	1	1	729400-729415	NC_014555.1_409616-409601	NA	3	3	Orphan	cas3,cas14j,cas2,DEDDh	NA|55aa|up_3|NC_014555.1_726390_726555_+,NA|306aa|down_7|NC_014555.1_739940_740858_-	NA|561aa|up_9|NC_014555.1_718997_720680_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|98aa|up_8|NC_014555.1_720693_720987_-	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|440aa|up_7|NC_014555.1_720983_722303_-	PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional	NA|389aa|up_6|NC_014555.1_723386_724553_-	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	NA|227aa|up_5|NC_014555.1_724614_725295_+	TIGR00364, 7-cyano-7-deazaguanine_synthase, queuosine biosynthesis protein QueC	NA|290aa|up_4|NC_014555.1_725340_726210_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|55aa|up_3|NC_014555.1_726390_726555_+	NA	NA|415aa|up_2|NC_014555.1_726821_728066_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|241aa|up_1|NC_014555.1_728068_728791_-	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]	NA|134aa|up_0|NC_014555.1_728803_729205_-	TIGR00150, Hypothetical_UPF0079_protein_yjeE	NA|211aa|down_0|NC_014555.1_731048_731681_-	TIGR00948, Hypothetical_protein_Rv0488/MT0507/Mb0498	NA|141aa|down_1|NC_014555.1_731947_732370_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|153aa|down_2|NC_014555.1_732398_732857_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|601aa|down_3|NC_014555.1_733292_735095_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|351aa|down_4|NC_014555.1_735234_736287_-	TIGR00520, L-asparaginase_2, L-asparaginase, type II	NA|444aa|down_5|NC_014555.1_736361_737693_+	TIGR00770, Anaerobic_C4-dicarboxylate_transporter_DcuA, anaerobic c4-dicarboxylate membrane transporter family protein	NA|628aa|down_6|NC_014555.1_737769_739653_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|306aa|down_7|NC_014555.1_739940_740858_-	NA	NA|329aa|down_8|NC_014555.1_740827_741814_-	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]	NA|339aa|down_9|NC_014555.1_741905_742922_-	pfam01171, ATP_bind_3, PP-loop family
GCF_000148875.1_ASM14887v1	NC_014555	Helicobacter pylori PeCan4, complete genome	4	937691-937828	4	CRISPRCasFinder	no		cas3,cas14j,cas2,DEDDh	Orphan	TTCAATCAAGGGACTTATAACTTTAAT	27	0	0	NA	NA	I-B	2	2	Orphan	cas3,cas14j,cas2,DEDDh	NA,NA|220aa|down_8|NC_014555.1_950497_951157_+	NA|383aa|up_9|NC_014555.1_919376_920525_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|677aa|up_8|NC_014555.1_920518_922549_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|518aa|up_7|NC_014555.1_923081_924635_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|530aa|up_6|NC_014555.1_924656_926246_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NC_014555.1_926811_928356_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|563aa|up_4|NC_014555.1_928593_930282_-	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|144aa|up_3|NC_014555.1_931208_931640_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NC_014555.1_931644_934902_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NC_014555.1_935001_935694_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|332aa|up_0|NC_014555.1_935839_936835_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|368aa|down_0|NC_014555.1_944080_945184_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NC_014555.1_945236_945443_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NC_014555.1_945588_946170_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NC_014555.1_946166_947312_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NC_014555.1_947250_948231_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NC_014555.1_948231_948774_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NC_014555.1_948789_949701_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NC_014555.1_949697_950501_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NC_014555.1_950497_951157_+	NA	NA|201aa|down_9|NC_014555.1_951160_951763_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_000148875.1_ASM14887v1	NC_014555	Helicobacter pylori PeCan4, complete genome	5	1093503-1093587	5	CRISPRCasFinder	no		cas3,cas14j,cas2,DEDDh	Orphan	CATGCGAGAAGTAGTGGTTCAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,cas2,DEDDh	NA|512aa|up_8|NC_014555.1_1083178_1084714_+,NA|436aa|down_0|NC_014555.1_1094814_1096122_+	NA|345aa|up_9|NC_014555.1_1081612_1082647_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NC_014555.1_1083178_1084714_+	NA	NA|251aa|up_7|NC_014555.1_1084734_1085487_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NC_014555.1_1085674_1086547_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NC_014555.1_1086616_1087243_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NC_014555.1_1087261_1089088_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NC_014555.1_1089153_1090431_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NC_014555.1_1090441_1091125_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NC_014555.1_1091111_1092122_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NC_014555.1_1092283_1093330_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NC_014555.1_1094814_1096122_+	NA	NA|221aa|down_1|NC_014555.1_1096128_1096791_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NC_014555.1_1097078_1097639_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NC_014555.1_1097654_1098047_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NC_014555.1_1098056_1099280_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NC_014555.1_1099292_1100237_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NC_014555.1_1100346_1101669_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NC_014555.1_1101731_1102565_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NC_014555.1_1102589_1104566_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|322aa|down_9|NC_014555.1_1104682_1105648_-	pfam12033, DUF3519, Protein of unknown function (DUF3519)
