assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000148855.1_ASM14885v1	NC_014560	Helicobacter pylori SJM180, complete genome	1	25838-25937	1	CRISPRCasFinder	no		cas3,RT,cas14k,DEDDh	Orphan	AAACACTCAAGGGTTCTTTAAAAAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,cas14k,DEDDh	NA|276aa|up_9|NC_014560.1_12838_13666_+,NA|88aa|up_7|NC_014560.1_14093_14357_+,NA|603aa|down_4|NC_014560.1_30073_31882_-	NA|276aa|up_9|NC_014560.1_12838_13666_+	NA	NA|94aa|up_8|NC_014560.1_13812_14094_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|88aa|up_7|NC_014560.1_14093_14357_+	NA	NA|788aa|up_6|NC_014560.1_14358_16722_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|470aa|up_5|NC_014560.1_16957_18367_+	COG3014, COG3014, Uncharacterized protein conserved in bacteria [Function unknown]	NA|322aa|up_4|NC_014560.1_18468_19434_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|406aa|up_3|NC_014560.1_19430_20648_+	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase	NA|191aa|up_2|NC_014560.1_20657_21230_-	PRK09597, PRK09597, lipid A 1-phosphatase LpxE	NA|524aa|up_1|NC_014560.1_21240_22812_-	PRK09598, PRK09598, phosphoethanolamine--lipid A transferase EptA	NA|692aa|up_0|NC_014560.1_23388_25464_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|427aa|down_0|NC_014560.1_26086_27367_-	PRK05614, gltA, citrate synthase	NA|426aa|down_1|NC_014560.1_27564_28842_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|178aa|down_2|NC_014560.1_28903_29437_+	pfam07509, DUF1523, Protein of unknown function (DUF1523)	NA|219aa|down_3|NC_014560.1_29413_30070_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|603aa|down_4|NC_014560.1_30073_31882_-	NA	NA|138aa|down_5|NC_014560.1_31992_32406_+	pfam00582, Usp, Universal stress protein family	NA|92aa|down_6|NC_014560.1_32407_32683_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|743aa|down_7|NC_014560.1_32682_34911_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|118aa|down_8|NC_014560.1_34900_35254_+	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|101aa|down_9|NC_014560.1_35256_35559_+	PRK03762, PRK03762, YbaB/EbfC family nucleoid-associated protein
GCF_000148855.1_ASM14885v1	NC_014560	Helicobacter pylori SJM180, complete genome	2	552447-552597	2	CRISPRCasFinder	no		cas3,RT,cas14k,DEDDh	Orphan	TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGC	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,cas14k,DEDDh	NA|101aa|up_8|NC_014560.1_540580_540883_+,NA|225aa|up_2|NC_014560.1_545679_546354_+,NA|325aa|down_7|NC_014560.1_558416_559391_+,NA|274aa|down_8|NC_014560.1_559387_560209_+	NA|482aa|up_9|NC_014560.1_538911_540357_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|101aa|up_8|NC_014560.1_540580_540883_+	NA	NA|151aa|up_7|NC_014560.1_541271_541724_+	TIGR00158, 50S_ribosomal_protein_L9, ribosomal protein L9	NA|181aa|up_6|NC_014560.1_541727_542270_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|444aa|up_5|NC_014560.1_542269_543601_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|303aa|up_4|NC_014560.1_543597_544506_+	COG1159, Era, GTPase [General function prediction only]	NA|331aa|up_3|NC_014560.1_544502_545495_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|225aa|up_2|NC_014560.1_545679_546354_+	NA	NA|202aa|up_1|NC_014560.1_547948_548554_+	pfam13087, AAA_12, AAA domain	NA|88aa|up_0|NC_014560.1_548511_548775_+	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases	NA|51aa|down_0|NC_014560.1_553703_553856_+	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases	NA|88aa|down_1|NC_014560.1_553813_554077_+	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases	NA|256aa|down_2|NC_014560.1_554232_555000_-	TIGR00067, Glutamate_racemase, glutamate racemase	NA|439aa|down_3|NC_014560.1_555036_556353_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|68aa|down_4|NC_014560.1_556616_556820_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|288aa|down_5|NC_014560.1_556844_557708_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|228aa|down_6|NC_014560.1_557720_558404_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|325aa|down_7|NC_014560.1_558416_559391_+	NA	NA|274aa|down_8|NC_014560.1_559387_560209_+	NA	NA|313aa|down_9|NC_014560.1_561190_562129_-	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
GCF_000148855.1_ASM14885v1	NC_014560	Helicobacter pylori SJM180, complete genome	3	905925-906013	3	CRISPRCasFinder	no		cas3,RT,cas14k,DEDDh	Orphan	TTTTTTAAACGCCTCCAATTTTACCT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,cas14k,DEDDh	NA|72aa|up_9|NC_014560.1_891842_892058_-,NA|292aa|up_8|NC_014560.1_892142_893018_-,NA|613aa|up_1|NC_014560.1_901142_902981_-,NA|81aa|down_6|NC_014560.1_915157_915400_-,NA|126aa|down_8|NC_014560.1_915725_916103_-	NA|72aa|up_9|NC_014560.1_891842_892058_-	NA	NA|292aa|up_8|NC_014560.1_892142_893018_-	NA	NA|506aa|up_7|NC_014560.1_893162_894680_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|792aa|up_6|NC_014560.1_895000_897376_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|158aa|up_5|NC_014560.1_897376_897850_-	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|244aa|up_4|NC_014560.1_897979_898711_+	COG1432, COG1432, Uncharacterized conserved protein [Function unknown]	NA|204aa|up_3|NC_014560.1_899764_900376_-	pfam12033, DUF3519, Protein of unknown function (DUF3519)	NA|184aa|up_2|NC_014560.1_900565_901117_-	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|613aa|up_1|NC_014560.1_901142_902981_-	NA	NA|487aa|up_0|NC_014560.1_903073_904534_+	pfam03023, MVIN, MviN-like protein	NA|1295aa|down_0|NC_014560.1_906218_910103_+	pfam02691, VacA, Vacuolating cyotoxin	NA|356aa|down_1|NC_014560.1_910220_911288_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|256aa|down_2|NC_014560.1_911403_912171_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_3|NC_014560.1_912170_913151_-	pfam01032, FecCD, FecCD transport family	NA|285aa|down_4|NC_014560.1_913143_913998_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|175aa|down_5|NC_014560.1_914137_914662_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|81aa|down_6|NC_014560.1_915157_915400_-	NA	NA|89aa|down_7|NC_014560.1_915478_915745_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|126aa|down_8|NC_014560.1_915725_916103_-	NA	NA|89aa|down_9|NC_014560.1_916181_916448_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ
GCF_000148855.1_ASM14885v1	NC_014560	Helicobacter pylori SJM180, complete genome	4	950396-950593	1,4	PILER-CR,CRISPRCasFinder	no		cas3,RT,cas14k,DEDDh	Orphan	TTCAATCAAGGCACTTATAA,TTCAATCAAGGCACTTATAATTTTAAT	20,27	0	0	NA	NA	I-B:I-B	3,3	3	Orphan	cas3,RT,cas14k,DEDDh	NA,NA|220aa|down_8|NC_014560.1_963327_963987_+	NA|378aa|up_9|NC_014560.1_931419_932553_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NC_014560.1_932561_934589_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|516aa|up_7|NC_014560.1_935413_936961_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|534aa|up_6|NC_014560.1_936982_938584_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NC_014560.1_939485_941030_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|816aa|up_4|NC_014560.1_941276_943724_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|144aa|up_3|NC_014560.1_943907_944339_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NC_014560.1_944343_947601_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NC_014560.1_947699_948392_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NC_014560.1_948537_949536_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|370aa|down_0|NC_014560.1_956888_957998_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NC_014560.1_958064_958271_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NC_014560.1_958418_959000_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NC_014560.1_958996_960142_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NC_014560.1_960080_961061_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NC_014560.1_961061_961604_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NC_014560.1_961619_962531_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NC_014560.1_962527_963331_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NC_014560.1_963327_963987_+	NA	NA|201aa|down_9|NC_014560.1_963988_964591_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
