assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000147795.2_ASM14779v3	NC_015596	Sinorhizobium meliloti AK83 chromosome 2, complete sequence	1	1080019-1080255	1	PILER-CR	no		csa3,RT	Orphan	CGCCGGCGCCGCCGATGCCGCCGCCGCCGCCGATCGACTGCGCGACGA	48	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,RT	NA|196aa|up_2|NC_015596.1_1074342_1074930_-,NA|133aa|down_2|NC_015596.1_1086848_1087247_-	NA|421aa|up_9|NC_015596.1_1064113_1065376_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|297aa|up_8|NC_015596.1_1065658_1066549_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_7|NC_015596.1_1066748_1067372_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_6|NC_015596.1_1067368_1068346_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_5|NC_015596.1_1068342_1070568_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_4|NC_015596.1_1070648_1072430_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|170aa|up_3|NC_015596.1_1073670_1074180_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|196aa|up_2|NC_015596.1_1074342_1074930_-	NA	NA|405aa|up_1|NC_015596.1_1075293_1076508_-	pfam04143, Sulf_transp, Sulphur transport	NA|304aa|up_0|NC_015596.1_1076615_1077527_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|384aa|down_0|NC_015596.1_1084838_1085990_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_1|NC_015596.1_1085977_1086760_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_2|NC_015596.1_1086848_1087247_-	NA	NA|1113aa|down_3|NC_015596.1_1087372_1090711_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_4|NC_015596.1_1090895_1092938_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_5|NC_015596.1_1092943_1094107_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_6|NC_015596.1_1094196_1095219_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_7|NC_015596.1_1095924_1097382_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_8|NC_015596.1_1097378_1098653_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|399aa|down_9|NC_015596.1_1098680_1099877_-	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional
GCF_000147795.2_ASM14779v3	NC_015590	Sinorhizobium meliloti AK83 chromosome 1, complete sequence	1	780002-780115	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT	NA|52aa|up_4|NC_015590.1_775331_775487_-,NA|59aa|up_3|NC_015590.1_775524_775701_-,NA	NA|466aa|up_9|NC_015590.1_762667_764065_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|987aa|up_8|NC_015590.1_764099_767060_+	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA|776aa|up_7|NC_015590.1_767070_769398_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|885aa|up_6|NC_015590.1_769751_772406_-	PRK14015, pepN, aminopeptidase N; Provisional	NA|313aa|up_5|NC_015590.1_772831_773770_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|52aa|up_4|NC_015590.1_775331_775487_-	NA	NA|59aa|up_3|NC_015590.1_775524_775701_-	NA	NA|287aa|up_2|NC_015590.1_775839_776700_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|430aa|up_1|NC_015590.1_776772_778062_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|555aa|up_0|NC_015590.1_778331_779996_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|333aa|down_0|NC_015590.1_780560_781559_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|296aa|down_1|NC_015590.1_781779_782667_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|338aa|down_2|NC_015590.1_782756_783770_-	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein	NA|134aa|down_3|NC_015590.1_783870_784272_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|309aa|down_4|NC_015590.1_784410_785337_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|496aa|down_5|NC_015590.1_785352_786840_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|340aa|down_6|NC_015590.1_786832_787852_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|319aa|down_7|NC_015590.1_787947_788904_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|501aa|down_8|NC_015590.1_788932_790435_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|107aa|down_9|NC_015590.1_790514_790835_-	COG1742, COG1742, Uncharacterized conserved protein [Function unknown]
GCF_000147795.2_ASM14779v3	NC_015590	Sinorhizobium meliloti AK83 chromosome 1, complete sequence	2	1773926-1774038	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	CCCTCATTCCTGTGCTTGTCACAGGAAT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT	NA,NA|313aa|down_2|NC_015590.1_1776689_1777628_+	NA|246aa|up_9|NC_015590.1_1761744_1762482_+	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|215aa|up_8|NC_015590.1_1762638_1763283_+	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|376aa|up_7|NC_015590.1_1763450_1764578_+	pfam11064, DUF2865, Protein of unknown function (DUF2865)	NA|228aa|up_6|NC_015590.1_1764601_1765285_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|274aa|up_5|NC_015590.1_1765582_1766404_-	PRK06198, PRK06198, short chain dehydrogenase; Provisional	NA|398aa|up_4|NC_015590.1_1766775_1767969_-	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|341aa|up_3|NC_015590.1_1768066_1769089_+	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|276aa|up_2|NC_015590.1_1769099_1769927_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|561aa|up_1|NC_015590.1_1769929_1771612_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|640aa|up_0|NC_015590.1_1771880_1773800_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|141aa|down_0|NC_015590.1_1774426_1774849_+	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|578aa|down_1|NC_015590.1_1774850_1776584_+	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|313aa|down_2|NC_015590.1_1776689_1777628_+	NA	NA|132aa|down_3|NC_015590.1_1777649_1778045_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|458aa|down_4|NC_015590.1_1778180_1779554_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|464aa|down_5|NC_015590.1_1779786_1781178_-	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant	NA|181aa|down_6|NC_015590.1_1781382_1781925_-	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|232aa|down_7|NC_015590.1_1782036_1782732_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|228aa|down_8|NC_015590.1_1782951_1783635_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|632aa|down_9|NC_015590.1_1783667_1785563_-	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000147795.2_ASM14779v3	NC_015590	Sinorhizobium meliloti AK83 chromosome 1, complete sequence	3	3597676-3597822	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	TCTCCCCGCATGCGGGGAGAAGGG	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,RT	NA,NA	NA|227aa|up_9|NC_015590.1_3586760_3587441_+	COG5461, COG5461, Type IV pili component [Cell motility and secretion]	NA|429aa|up_8|NC_015590.1_3587463_3588750_+	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|490aa|up_7|NC_015590.1_3588811_3590281_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|337aa|up_6|NC_015590.1_3590339_3591350_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|328aa|up_5|NC_015590.1_3591357_3592341_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|388aa|up_4|NC_015590.1_3592569_3593733_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|270aa|up_3|NC_015590.1_3593989_3594799_-	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|464aa|up_2|NC_015590.1_3594929_3596321_+	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|115aa|up_1|NC_015590.1_3596408_3596753_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|285aa|up_0|NC_015590.1_3596761_3597616_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|320aa|down_0|NC_015590.1_3597852_3598812_-	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|543aa|down_1|NC_015590.1_3598822_3600451_-	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|378aa|down_2|NC_015590.1_3600459_3601593_-	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|361aa|down_3|NC_015590.1_3601592_3602675_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|620aa|down_4|NC_015590.1_3602855_3604715_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|356aa|down_5|NC_015590.1_3605006_3606074_+	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|127aa|down_6|NC_015590.1_3606194_3606575_+	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|340aa|down_7|NC_015590.1_3606636_3607656_+	PRK00292, glk, glucokinase; Provisional	NA|602aa|down_8|NC_015590.1_3607764_3609570_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|273aa|down_9|NC_015590.1_3609587_3610406_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
