assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	1	161283-161397	1	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Orphan	CTGTGCGCTTAAGAACAAAAAACCGCTGGCCGC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA,NA	NA|39aa|up_9|NC_017934.1_148595_148712_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|444aa|up_8|NC_017934.1_149393_150725_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|457aa|up_7|NC_017934.1_150822_152193_+	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism]	NA|414aa|up_6|NC_017934.1_153525_154767_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|289aa|up_5|NC_017934.1_154834_155701_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|279aa|up_4|NC_017934.1_155697_156534_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|323aa|up_3|NC_017934.1_156537_157506_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|319aa|up_2|NC_017934.1_157489_158446_+	COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]	NA|486aa|up_1|NC_017934.1_158442_159900_+	cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases	NA|282aa|up_0|NC_017934.1_159901_160747_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|388aa|down_0|NC_017934.1_162673_163837_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|186aa|down_1|NC_017934.1_163841_164399_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|104aa|down_2|NC_017934.1_164461_164773_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|719aa|down_3|NC_017934.1_167119_169276_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|349aa|down_4|NC_017934.1_169272_170319_+	PRK07409, PRK07409, threonine synthase; Validated	NA|283aa|down_5|NC_017934.1_170315_171164_+	COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism]	NA|475aa|down_6|NC_017934.1_171187_172612_-	PRK09431, asnB, asparagine synthetase B; Provisional	NA|360aa|down_7|NC_017934.1_172894_173974_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|540aa|down_8|NC_017934.1_173975_175595_+	pfam02310, B12-binding, B12 binding domain	NA|719aa|down_9|NC_017934.1_177177_179334_+	PRK06635, PRK06635, aspartate kinase; Reviewed
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	2	1713165-1713532	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type III-A, Type III-C?,Type III-B,Type III-C,Type III-D	GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCTTACGCAACA	30,30,31	0	0	NA	NA	NA:NA:NA	5,5,3	5	TypeIII-C?,TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA,NA|1076aa|down_1|NC_017934.1_1719482_1722710_-	NA|547aa|up_9|NC_017934.1_1695004_1696645_-	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|343aa|up_8|NC_017934.1_1696649_1697678_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|275aa|up_7|NC_017934.1_1697693_1698518_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|293aa|up_6|NC_017934.1_1698529_1699408_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|415aa|up_5|NC_017934.1_1699463_1700708_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|92aa|up_4|NC_017934.1_1701776_1702052_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	RT|412aa|up_3|NC_017934.1_1702956_1704192_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|468aa|up_2|NC_017934.1_1705019_1706423_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|773aa|up_1|NC_017934.1_1707259_1709578_-	pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding	RT|412aa|up_0|NC_017934.1_1710879_1712115_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	csm6|350aa|down_0|NC_017934.1_1718454_1719504_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|1076aa|down_1|NC_017934.1_1719482_1722710_-	NA	NA|1032aa|down_2|NC_017934.1_1722758_1725854_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	cmr6gr7|252aa|down_3|NC_017934.1_1726250_1727006_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|117aa|down_4|NC_017934.1_1726998_1727349_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|269aa|down_5|NC_017934.1_1727348_1728155_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|352aa|down_6|NC_017934.1_1728151_1729207_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|791aa|down_7|NC_017934.1_1729203_1731576_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|412aa|down_8|NC_017934.1_1731572_1732808_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|377aa|down_9|NC_017934.1_1732823_1733954_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	3	1714650-1717707	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCTTACGCAAC	30,30,30	0	0	NA	NA	NA:NA:NA	45,45,44	45	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA,NA|1076aa|down_1|NC_017934.1_1719482_1722710_-	NA|547aa|up_9|NC_017934.1_1695004_1696645_-	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|343aa|up_8|NC_017934.1_1696649_1697678_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|275aa|up_7|NC_017934.1_1697693_1698518_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|293aa|up_6|NC_017934.1_1698529_1699408_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|415aa|up_5|NC_017934.1_1699463_1700708_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|92aa|up_4|NC_017934.1_1701776_1702052_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	RT|412aa|up_3|NC_017934.1_1702956_1704192_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|468aa|up_2|NC_017934.1_1705019_1706423_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|773aa|up_1|NC_017934.1_1707259_1709578_-	pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding	RT|412aa|up_0|NC_017934.1_1710879_1712115_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	csm6|350aa|down_0|NC_017934.1_1718454_1719504_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|1076aa|down_1|NC_017934.1_1719482_1722710_-	NA	NA|1032aa|down_2|NC_017934.1_1722758_1725854_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	cmr6gr7|252aa|down_3|NC_017934.1_1726250_1727006_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|117aa|down_4|NC_017934.1_1726998_1727349_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|269aa|down_5|NC_017934.1_1727348_1728155_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|352aa|down_6|NC_017934.1_1728151_1729207_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|791aa|down_7|NC_017934.1_1729203_1731576_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|412aa|down_8|NC_017934.1_1731572_1732808_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|377aa|down_9|NC_017934.1_1732823_1733954_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	4	1737305-1737470	4	CRISPRCasFinder	no	csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type III-A,Type I-B,Type III-B,Type III-C,Type III-D	GTTTCCATACCACTATGGTTCTTACGCAAC	30	0	0	NA	NA	NA	2	2	TypeIII-A,TypeI-B,TypeIII-B,TypeIII-C,TypeIII-D	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA|174aa|up_1|NC_017934.1_1734409_1734931_-,cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-,NA|58aa|down_6|NC_017934.1_1751541_1751715_-,NA|50aa|down_7|NC_017934.1_1752367_1752517_-	cmr6gr7|252aa|up_9|NC_017934.1_1726250_1727006_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|117aa|up_8|NC_017934.1_1726998_1727349_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|269aa|up_7|NC_017934.1_1727348_1728155_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|352aa|up_6|NC_017934.1_1728151_1729207_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|791aa|up_5|NC_017934.1_1729203_1731576_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|412aa|up_4|NC_017934.1_1731572_1732808_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|377aa|up_3|NC_017934.1_1732823_1733954_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas2|88aa|up_2|NC_017934.1_1734051_1734315_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|174aa|up_1|NC_017934.1_1734409_1734931_-	NA	NA|51aa|up_0|NC_017934.1_1735151_1735304_-	pfam00771, FHIPEP, FHIPEP family	cas1|328aa|down_0|NC_017934.1_1745048_1746032_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|170aa|down_1|NC_017934.1_1746043_1746553_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|685aa|down_2|NC_017934.1_1746552_1748607_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|232aa|down_3|NC_017934.1_1748611_1749307_-	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|304aa|down_4|NC_017934.1_1749352_1750264_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-	NA	NA|58aa|down_6|NC_017934.1_1751541_1751715_-	NA	NA|50aa|down_7|NC_017934.1_1752367_1752517_-	NA	NA|230aa|down_8|NC_017934.1_1752600_1753290_-	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family	NA|197aa|down_9|NC_017934.1_1753294_1753885_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	5	1738012-1738379	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type III-A,Type I-B,Type III-B,Type III-C,Type III-D	GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCTTACGCAAC	30,30,30	0	0	NA	NA	NA:NA:NA	5,5,3	5	TypeIII-A,TypeI-B,TypeIII-B,TypeIII-C,TypeIII-D	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA|174aa|up_1|NC_017934.1_1734409_1734931_-,cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-,NA|58aa|down_6|NC_017934.1_1751541_1751715_-,NA|50aa|down_7|NC_017934.1_1752367_1752517_-	cmr6gr7|252aa|up_9|NC_017934.1_1726250_1727006_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|117aa|up_8|NC_017934.1_1726998_1727349_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|269aa|up_7|NC_017934.1_1727348_1728155_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|352aa|up_6|NC_017934.1_1728151_1729207_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|791aa|up_5|NC_017934.1_1729203_1731576_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|412aa|up_4|NC_017934.1_1731572_1732808_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|377aa|up_3|NC_017934.1_1732823_1733954_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas2|88aa|up_2|NC_017934.1_1734051_1734315_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|174aa|up_1|NC_017934.1_1734409_1734931_-	NA	NA|51aa|up_0|NC_017934.1_1735151_1735304_-	pfam00771, FHIPEP, FHIPEP family	cas1|328aa|down_0|NC_017934.1_1745048_1746032_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|170aa|down_1|NC_017934.1_1746043_1746553_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|685aa|down_2|NC_017934.1_1746552_1748607_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|232aa|down_3|NC_017934.1_1748611_1749307_-	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|304aa|down_4|NC_017934.1_1749352_1750264_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-	NA	NA|58aa|down_6|NC_017934.1_1751541_1751715_-	NA	NA|50aa|down_7|NC_017934.1_1752367_1752517_-	NA	NA|230aa|down_8|NC_017934.1_1752600_1753290_-	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family	NA|197aa|down_9|NC_017934.1_1753294_1753885_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	6	1738636-1739133	6,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type III-A,Type I-B,Type III-B,Type III-C,Type III-D	GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCT,GTTTCCATACCACTATGGTTCTCACGCAAC	30,22,30	0	0	NA	NA	NA:NA:NA	7,7,5	7	TypeIII-A,TypeI-B,TypeIII-B,TypeIII-C,TypeIII-D	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA|174aa|up_1|NC_017934.1_1734409_1734931_-,cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-,NA|58aa|down_6|NC_017934.1_1751541_1751715_-,NA|50aa|down_7|NC_017934.1_1752367_1752517_-	cmr6gr7|252aa|up_9|NC_017934.1_1726250_1727006_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|117aa|up_8|NC_017934.1_1726998_1727349_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|269aa|up_7|NC_017934.1_1727348_1728155_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|352aa|up_6|NC_017934.1_1728151_1729207_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|791aa|up_5|NC_017934.1_1729203_1731576_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|412aa|up_4|NC_017934.1_1731572_1732808_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|377aa|up_3|NC_017934.1_1732823_1733954_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas2|88aa|up_2|NC_017934.1_1734051_1734315_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|174aa|up_1|NC_017934.1_1734409_1734931_-	NA	NA|51aa|up_0|NC_017934.1_1735151_1735304_-	pfam00771, FHIPEP, FHIPEP family	cas1|328aa|down_0|NC_017934.1_1745048_1746032_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|170aa|down_1|NC_017934.1_1746043_1746553_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|685aa|down_2|NC_017934.1_1746552_1748607_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|232aa|down_3|NC_017934.1_1748611_1749307_-	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|304aa|down_4|NC_017934.1_1749352_1750264_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-	NA	NA|58aa|down_6|NC_017934.1_1751541_1751715_-	NA	NA|50aa|down_7|NC_017934.1_1752367_1752517_-	NA	NA|230aa|down_8|NC_017934.1_1752600_1753290_-	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family	NA|197aa|down_9|NC_017934.1_1753294_1753885_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	7	1739718-1744360	7,5,5	CRISPRCasFinder,CRT,PILER-CR	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,RT	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type III-A,Type I-B,Type III-B,Type III-C,Type III-D	GTTTCCATACCACTATGGTTCTTACGCAAC,GTTTCCATACCACTATGGTTCT,GTTTCCATACCACTATGGTTCTTACGCAAC	30,22,30	0	0	NA	NA	NA:NA:NA	69,69,66	69	TypeIII-A,TypeI-B,TypeIII-B,TypeIII-C,TypeIII-D	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA|174aa|up_1|NC_017934.1_1734409_1734931_-,cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-,NA|58aa|down_6|NC_017934.1_1751541_1751715_-,NA|50aa|down_7|NC_017934.1_1752367_1752517_-	cmr6gr7|252aa|up_9|NC_017934.1_1726250_1727006_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|117aa|up_8|NC_017934.1_1726998_1727349_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|269aa|up_7|NC_017934.1_1727348_1728155_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|352aa|up_6|NC_017934.1_1728151_1729207_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|791aa|up_5|NC_017934.1_1729203_1731576_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|412aa|up_4|NC_017934.1_1731572_1732808_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|377aa|up_3|NC_017934.1_1732823_1733954_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas2|88aa|up_2|NC_017934.1_1734051_1734315_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|174aa|up_1|NC_017934.1_1734409_1734931_-	NA	NA|51aa|up_0|NC_017934.1_1735151_1735304_-	pfam00771, FHIPEP, FHIPEP family	cas1|328aa|down_0|NC_017934.1_1745048_1746032_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|170aa|down_1|NC_017934.1_1746043_1746553_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|685aa|down_2|NC_017934.1_1746552_1748607_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|232aa|down_3|NC_017934.1_1748611_1749307_-	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|304aa|down_4|NC_017934.1_1749352_1750264_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b1|434aa|down_5|NC_017934.1_1750223_1751525_-	NA	NA|58aa|down_6|NC_017934.1_1751541_1751715_-	NA	NA|50aa|down_7|NC_017934.1_1752367_1752517_-	NA	NA|230aa|down_8|NC_017934.1_1752600_1753290_-	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family	NA|197aa|down_9|NC_017934.1_1753294_1753885_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	8	2055189-2055273	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type I-A	ACGAACAATGAGTAAACAAGCACCGA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA,NA|157aa|down_2|NC_017934.1_2056988_2057459_-,NA|414aa|down_3|NC_017934.1_2057565_2058807_-,NA|298aa|down_4|NC_017934.1_2059112_2060006_-,NA|66aa|down_8|NC_017934.1_2063024_2063222_-	NA|273aa|up_9|NC_017934.1_2042157_2042976_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|293aa|up_8|NC_017934.1_2042972_2043851_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|417aa|up_7|NC_017934.1_2043869_2045120_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|326aa|up_6|NC_017934.1_2045137_2046115_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|442aa|up_5|NC_017934.1_2046471_2047797_+	pfam16153, DUF4861, Domain of unknown function (DUF4861)	NA|776aa|up_4|NC_017934.1_2047842_2050170_+	cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement	NA|491aa|up_3|NC_017934.1_2050866_2052339_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|178aa|up_2|NC_017934.1_2052440_2052974_-	pfam16321, Ribosom_S30AE_C, Sigma 54 modulation/S30EA ribosomal protein C-terminus	NA|154aa|up_1|NC_017934.1_2053069_2053531_-	cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|504aa|up_0|NC_017934.1_2053619_2055131_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|68aa|down_0|NC_017934.1_2055832_2056036_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|101aa|down_1|NC_017934.1_2056237_2056540_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|157aa|down_2|NC_017934.1_2056988_2057459_-	NA	NA|414aa|down_3|NC_017934.1_2057565_2058807_-	NA	NA|298aa|down_4|NC_017934.1_2059112_2060006_-	NA	NA|319aa|down_5|NC_017934.1_2060052_2061009_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|393aa|down_6|NC_017934.1_2061148_2062327_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|117aa|down_7|NC_017934.1_2062437_2062788_+	PRK09272, PRK09272, hypothetical protein; Provisional	NA|66aa|down_8|NC_017934.1_2063024_2063222_-	NA	NA|257aa|down_9|NC_017934.1_2063693_2064464_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	9	2471273-2476498	9,6,6	CRISPRCasFinder,CRT,PILER-CR	no	cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,csm3gr7,cas6,cas2,cas1,cas4,cas3	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCAATTCCTCATAGGTAGTCTGGAAGC,GTTTCAATTCCTCATAGGTAGTCTGGAAGC,GTTTCAATTCCTCATAGGTAGTCTGGAAGC	30,30,30	0	0	NA	NA	NA:NA:NA	79,79,77	79	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	NA|278aa|up_3|NC_017934.1_2464192_2465026_-,cmr5gr11|133aa|down_1|NC_017934.1_2477496_2477895_-	NA|282aa|up_9|NC_017934.1_2457584_2458430_-	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]	NA|386aa|up_8|NC_017934.1_2458455_2459613_-	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins	NA|387aa|up_7|NC_017934.1_2459982_2461143_-	cd06316, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|411aa|up_6|NC_017934.1_2461175_2462408_-	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX	NA|320aa|up_5|NC_017934.1_2462432_2463392_-	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|243aa|up_4|NC_017934.1_2463411_2464140_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|278aa|up_3|NC_017934.1_2464192_2465026_-	NA	NA|700aa|up_2|NC_017934.1_2465044_2467144_-	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|381aa|up_1|NC_017934.1_2467190_2468333_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|456aa|up_0|NC_017934.1_2469362_2470730_+	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	cmr3gr5|275aa|down_0|NC_017934.1_2476672_2477497_-	pfam03787, RAMPs, RAMP superfamily	cmr5gr11|133aa|down_1|NC_017934.1_2477496_2477895_-	NA	cmr4gr7|313aa|down_2|NC_017934.1_2477891_2478830_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas10|1006aa|down_3|NC_017934.1_2478826_2481844_-	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr6gr7|356aa|down_4|NC_017934.1_2481840_2482908_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	csm3gr7|353aa|down_5|NC_017934.1_2482897_2483956_-	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1	cas6|107aa|down_6|NC_017934.1_2484115_2484436_-	pfam01881, Cas_Cas6, CRISPR associated protein Cas6	cas2|90aa|down_7|NC_017934.1_2492116_2492386_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_8|NC_017934.1_2492389_2493379_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|166aa|down_9|NC_017934.1_2493383_2493881_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83
GCF_000147715.2_ASM14771v3	NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	10	2484839-2491949	7,10,7,8	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,csm3gr7,cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	Type I-B,Type III-A, Type I-B?,Type III-B,Type III-C,Type III-D	GTTTCAATTCCTCATAGGTAGTCTGGAAGC,GTTTCAATTCCTCATAGGTAGTCTGGAAGC,GTTTCAATTCCTCATAGGTAGTCTGGAAGC,GTTTCAATTCCTCATAGGTAGTCTGGAAGC	30,30,30,30	0	0	NA	NA	NA:NA:NA:NA	105,107,107,105	107	TypeIII-A,TypeI-B?,TypeI-B,TypeIII-B,TypeIII-C,TypeIII-D	cas3,DEDDh,PrimPol,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	cmr5gr11|133aa|up_5|NC_017934.1_2477496_2477895_-,NA|47aa|down_8|NC_017934.1_2500811_2500952_-,NA|81aa|down_9|NC_017934.1_2501171_2501414_-	NA|700aa|up_9|NC_017934.1_2465044_2467144_-	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|381aa|up_8|NC_017934.1_2467190_2468333_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|456aa|up_7|NC_017934.1_2469362_2470730_+	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	cmr3gr5|275aa|up_6|NC_017934.1_2476672_2477497_-	pfam03787, RAMPs, RAMP superfamily	cmr5gr11|133aa|up_5|NC_017934.1_2477496_2477895_-	NA	cmr4gr7|313aa|up_4|NC_017934.1_2477891_2478830_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas10|1006aa|up_3|NC_017934.1_2478826_2481844_-	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr6gr7|356aa|up_2|NC_017934.1_2481840_2482908_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	csm3gr7|353aa|up_1|NC_017934.1_2482897_2483956_-	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1	cas6|107aa|up_0|NC_017934.1_2484115_2484436_-	pfam01881, Cas_Cas6, CRISPR associated protein Cas6	cas2|90aa|down_0|NC_017934.1_2492116_2492386_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NC_017934.1_2492389_2493379_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|166aa|down_2|NC_017934.1_2493383_2493881_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|782aa|down_3|NC_017934.1_2493877_2496223_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|242aa|down_4|NC_017934.1_2496219_2496945_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|317aa|down_5|NC_017934.1_2496956_2497907_-	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b1|585aa|down_6|NC_017934.1_2497927_2499682_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|245aa|down_7|NC_017934.1_2499686_2500421_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|47aa|down_8|NC_017934.1_2500811_2500952_-	NA	NA|81aa|down_9|NC_017934.1_2501171_2501414_-	NA
