assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000147055.1_ASM14705v1	NC_014500	Dickeya dadantii 3937, complete sequence	1	1728693-1730439	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	Type I-U, Type I-U?,Type I-C	GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC,GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC,GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	26,25,25	26	TypeI-U,TypeI-U?,TypeI-C	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	NA,NA	NA|241aa|up_9|NC_014500.1_1719334_1720057_+	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|390aa|up_8|NC_014500.1_1720053_1721223_+	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional	NA|187aa|up_7|NC_014500.1_1721222_1721783_+	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional	NA|250aa|up_6|NC_014500.1_1721787_1722537_+	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional	NA|295aa|up_5|NC_014500.1_1722732_1723617_-	PRK10376, PRK10376, putative oxidoreductase; Provisional	NA|307aa|up_4|NC_014500.1_1723719_1724640_+	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|286aa|up_3|NC_014500.1_1724835_1725693_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|311aa|up_2|NC_014500.1_1725825_1726758_+	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein	NA|288aa|up_1|NC_014500.1_1726916_1727780_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|298aa|up_0|NC_014500.1_1727782_1728676_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	cas2|98aa|down_0|NC_014500.1_1730619_1730913_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|342aa|down_1|NC_014500.1_1730940_1731966_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|214aa|down_2|NC_014500.1_1731946_1732588_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|293aa|down_3|NC_014500.1_1732591_1733470_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|583aa|down_4|NC_014500.1_1733466_1735215_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|221aa|down_5|NC_014500.1_1735211_1735874_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|754aa|down_6|NC_014500.1_1735885_1738147_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|460aa|down_7|NC_014500.1_1738642_1740022_+	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate transaminase	NA|705aa|down_8|NC_014500.1_1740193_1742308_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|621aa|down_9|NC_014500.1_1742414_1744277_+	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000147055.1_ASM14705v1	NC_014500	Dickeya dadantii 3937, complete sequence	2	3985144-3985530	2,2	PILER-CR,CRISPRCasFinder	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	Type I-F	GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTGTAGGCAGCTTAGAAA	28,28	0	0	NA	NA	I-F:I-F	4,6	6	TypeI-F	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	NA,NA	NA|151aa|up_9|NC_014500.1_3973292_3973745_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|643aa|up_8|NC_014500.1_3974104_3976033_+	sd00006, TPR, Tetratricopeptide repeat	NA|335aa|up_7|NC_014500.1_3976272_3977277_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|92aa|up_6|NC_014500.1_3977467_3977743_+	PRK09459, pspG, envelope stress response protein PspG	NA|469aa|up_5|NC_014500.1_3978152_3979559_-	pfam00067, p450, Cytochrome P450	NA|330aa|up_4|NC_014500.1_3979914_3980904_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|468aa|up_3|NC_014500.1_3981026_3982430_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|359aa|up_2|NC_014500.1_3982465_3983542_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|83aa|up_1|NC_014500.1_3983684_3983933_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_0|NC_014500.1_3984176_3984944_-	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|458aa|down_0|NC_014500.1_3985942_3987316_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|down_1|NC_014500.1_3987686_3988163_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|down_2|NC_014500.1_3988413_3989028_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|down_3|NC_014500.1_3989076_3990270_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|down_4|NC_014500.1_3991636_3992191_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|down_5|NC_014500.1_3992197_3993205_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|313aa|down_6|NC_014500.1_3993221_3994160_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|down_7|NC_014500.1_3994156_3995494_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1092aa|down_8|NC_014500.1_3995508_3998784_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|down_9|NC_014500.1_3998780_3999782_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST
GCF_000147055.1_ASM14705v1	NC_014500	Dickeya dadantii 3937, complete sequence	3	3990760-3991507	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	Type I-F	TTTCTAAGCTGCCTACTCGGCAGTGAAC,TTTCTAAGCTGCCTACACGGCAGTGAAC,GTTCACTGCCGTGTAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,12,11	12	TypeI-F	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	NA,NA	NA|469aa|up_9|NC_014500.1_3978152_3979559_-	pfam00067, p450, Cytochrome P450	NA|330aa|up_8|NC_014500.1_3979914_3980904_-	PRK10754, PRK10754, NADPH:quinone reductase	NA|468aa|up_7|NC_014500.1_3981026_3982430_+	PRK08006, PRK08006, replicative DNA helicase DnaB	NA|359aa|up_6|NC_014500.1_3982465_3983542_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|83aa|up_5|NC_014500.1_3983684_3983933_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|256aa|up_4|NC_014500.1_3984176_3984944_-	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|458aa|up_3|NC_014500.1_3985942_3987316_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|up_2|NC_014500.1_3987686_3988163_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_1|NC_014500.1_3988413_3989028_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_0|NC_014500.1_3989076_3990270_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|down_0|NC_014500.1_3991636_3992191_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|down_1|NC_014500.1_3992197_3993205_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|313aa|down_2|NC_014500.1_3993221_3994160_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|down_3|NC_014500.1_3994156_3995494_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1092aa|down_4|NC_014500.1_3995508_3998784_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|down_5|NC_014500.1_3998780_3999782_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|564aa|down_6|NC_014500.1_4001575_4003267_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|537aa|down_7|NC_014500.1_4004244_4005855_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|427aa|down_8|NC_014500.1_4006183_4007464_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|140aa|down_9|NC_014500.1_4007474_4007894_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047
GCF_000147055.1_ASM14705v1	NC_014500	Dickeya dadantii 3937, complete sequence	4	4000264-4001551	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	Type I-F	GTTCACTGCCGAGTAGGCAGCTTAGAAA,GTTCACTGCCGAGTAGGCAGCTTAGAAA,GTTCACTGCCGAGTAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	20,20,21	21	TypeI-F	cas3,WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	NA,NA|163aa|down_8|NC_014500.1_4014393_4014882_+	NA|458aa|up_9|NC_014500.1_3985942_3987316_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|159aa|up_8|NC_014500.1_3987686_3988163_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|205aa|up_7|NC_014500.1_3988413_3989028_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|398aa|up_6|NC_014500.1_3989076_3990270_+	PRK09257, PRK09257, aromatic amino acid transaminase	cas6f|185aa|up_5|NC_014500.1_3991636_3992191_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|336aa|up_4|NC_014500.1_3992197_3993205_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|313aa|up_3|NC_014500.1_3993221_3994160_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|446aa|up_2|NC_014500.1_3994156_3995494_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1092aa|up_1|NC_014500.1_3995508_3998784_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|334aa|up_0|NC_014500.1_3998780_3999782_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|564aa|down_0|NC_014500.1_4001575_4003267_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|537aa|down_1|NC_014500.1_4004244_4005855_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|427aa|down_2|NC_014500.1_4006183_4007464_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|140aa|down_3|NC_014500.1_4007474_4007894_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|330aa|down_4|NC_014500.1_4008295_4009285_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|944aa|down_5|NC_014500.1_4009654_4012486_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|182aa|down_6|NC_014500.1_4012741_4013287_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|193aa|down_7|NC_014500.1_4013347_4013926_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|163aa|down_8|NC_014500.1_4014393_4014882_+	NA	NA|196aa|down_9|NC_014500.1_4015164_4015752_+	pfam14065, DUF4255, Protein of unknown function (DUF4255)
