assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000146165.2_ASM14616v2	NC_004347	Shewanella oneidensis MR-1, complete sequence	1	127647-127788	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	GAAAGTGCATTATGTTGTTGATTTAAAATGGGTGGCCGGATTTA	44	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|205aa|up_5|NC_004347.2_121745_122360_-,NA|326aa|up_1|NC_004347.2_125324_126302_+,NA|326aa|up_0|NC_004347.2_126480_127458_+,NA|291aa|down_0|NC_004347.2_128106_128979_+,NA|193aa|down_2|NC_004347.2_129649_130228_-	NA|279aa|up_9|NC_004347.2_117784_118621_+	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|405aa|up_8|NC_004347.2_118746_119961_+	PRK11099, PRK11099, putative inner membrane protein; Provisional	NA|78aa|up_7|NC_004347.2_119960_120194_+	PRK11018, PRK11018, putative sulfurtransferase YedF	NA|448aa|up_6|NC_004347.2_120286_121630_-	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase	NA|205aa|up_5|NC_004347.2_121745_122360_-	NA	NA|208aa|up_4|NC_004347.2_122641_123265_+	pfam09864, MliC, Membrane-bound lysozyme-inhibitor of c-type lysozyme	NA|330aa|up_3|NC_004347.2_123265_124255_-	pfam04338, DUF481, Protein of unknown function, DUF481	NA|204aa|up_2|NC_004347.2_124393_125005_-	pfam11355, DUF3157, Protein of unknown function (DUF3157)	NA|326aa|up_1|NC_004347.2_125324_126302_+	NA	NA|326aa|up_0|NC_004347.2_126480_127458_+	NA	NA|291aa|down_0|NC_004347.2_128106_128979_+	NA	NA|131aa|down_1|NC_004347.2_129239_129632_+	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|193aa|down_2|NC_004347.2_129649_130228_-	NA	NA|423aa|down_3|NC_004347.2_130436_131705_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|208aa|down_4|NC_004347.2_131701_132325_-	PRK10520, rhtB, homoserine/homoserine lactone efflux protein; Provisional	NA|187aa|down_5|NC_004347.2_132351_132912_-	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168	NA|150aa|down_6|NC_004347.2_133039_133489_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|267aa|down_7|NC_004347.2_133510_134311_-	pfam05742, TANGO2, Transport and Golgi organisation 2	NA|547aa|down_8|NC_004347.2_134373_136014_-	PRK13263, ureE, urease accessory protein UreE; Provisional	NA|198aa|down_9|NC_004347.2_136309_136903_+	PRK10739, PRK10739, YhgN family NAAT transporter
GCF_000146165.2_ASM14616v2	NC_004347	Shewanella oneidensis MR-1, complete sequence	2	437236-437357	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	GCCCGTTCTGCTTTTTCTAGCAGCAGCGCTTTTTGCAGCGCTCTAG	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA,NA	NA|70aa|up_9|NC_004347.2_427224_427434_-	PRK00418, PRK00418, DNA gyrase inhibitor YacG	NA|245aa|up_8|NC_004347.2_427494_428229_-	PRK05287, PRK05287, cell division protein ZapD	NA|206aa|up_7|NC_004347.2_428221_428839_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|309aa|up_6|NC_004347.2_428992_429919_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|424aa|up_5|NC_004347.2_430084_431356_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|570aa|up_4|NC_004347.2_431607_433317_-	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|134aa|up_3|NC_004347.2_433390_433792_-	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]	NA|294aa|up_2|NC_004347.2_434287_435169_-	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|182aa|up_1|NC_004347.2_435462_436008_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|284aa|up_0|NC_004347.2_436277_437129_+	PRK10987, PRK10987, beta-lactamase regulator AmpE	NA|251aa|down_0|NC_004347.2_437566_438319_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|889aa|down_1|NC_004347.2_438400_441067_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|678aa|down_2|NC_004347.2_441079_443113_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|476aa|down_3|NC_004347.2_443262_444690_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|1492aa|down_4|NC_004347.2_444828_449304_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|738aa|down_5|NC_004347.2_449531_451745_+	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1	NA|681aa|down_6|NC_004347.2_451966_454009_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|109aa|down_7|NC_004347.2_454326_454653_-	pfam11006, DUF2845, Protein of unknown function (DUF2845)	NA|218aa|down_8|NC_004347.2_454705_455359_-	PRK10826, PRK10826, hexitol phosphatase HxpB	NA|866aa|down_9|NC_004347.2_455780_458378_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
GCF_000146165.2_ASM14616v2	NC_004347	Shewanella oneidensis MR-1, complete sequence	3	907715-907822	3	CRISPRCasFinder	no	cas3	csa3,DEDDh,cas3,WYL,DinG	Unclear	CTGGCATAACCAAGGGAATCAACAGATCAAG	31	0	0	NA	NA	NA	1	1	Unclear	csa3,DEDDh,cas3,WYL,DinG	NA|174aa|up_9|NC_004347.2_898428_898950_-,NA|169aa|down_3|NC_004347.2_910297_910804_+	NA|174aa|up_9|NC_004347.2_898428_898950_-	NA	NA|282aa|up_8|NC_004347.2_899246_900092_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|265aa|up_7|NC_004347.2_900168_900963_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|163aa|up_6|NC_004347.2_901019_901508_-	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|484aa|up_5|NC_004347.2_901507_902959_-	TIGR01942, pcnB, poly(A) polymerase	NA|299aa|up_4|NC_004347.2_903098_903995_-	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|148aa|up_3|NC_004347.2_904131_904575_-	PRK10778, dksA, RNA polymerase-binding protein DksA	NA|235aa|up_2|NC_004347.2_904738_905443_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|431aa|up_1|NC_004347.2_905611_906904_+	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|170aa|up_0|NC_004347.2_907092_907602_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|296aa|down_0|NC_004347.2_907975_908863_-	PRK15453, PRK15453, phosphoribulokinase; Provisional	NA|82aa|down_1|NC_004347.2_908947_909193_-	pfam06794, UPF0270, Uncharacterized protein family (UPF0270)	NA|328aa|down_2|NC_004347.2_909202_910186_-	PRK10985, PRK10985, putative hydrolase; Provisional	NA|169aa|down_3|NC_004347.2_910297_910804_+	NA	NA|534aa|down_4|NC_004347.2_910850_912452_+	pfam00732, GMC_oxred_N, GMC oxidoreductase	NA|137aa|down_5|NC_004347.2_912464_912875_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|154aa|down_6|NC_004347.2_912926_913388_-	pfam09523, DUF2390, Protein of unknown function (DUF2390)	NA|638aa|down_7|NC_004347.2_913423_915337_-	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional	NA|67aa|down_8|NC_004347.2_915613_915814_+	TIGR02443, Hypothetical_protein_yheV	NA|371aa|down_9|NC_004347.2_915982_917095_+	PRK13551, PRK13551, agmatine deiminase; Provisional
GCF_000146165.2_ASM14616v2	NC_004347	Shewanella oneidensis MR-1, complete sequence	4	1951292-1951416	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	CGCCATATTTCATGGAAAGCCATCAGCAATAATGGC	36	1	1	1951328-1951380	NC_004347.2_1950617-1950669	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|200aa|up_0|NC_004347.2_1950158_1950758_+,NA|240aa|down_4|NC_004347.2_1956433_1957153_-,NA|51aa|down_9|NC_004347.2_1961177_1961330_+	NA|178aa|up_9|NC_004347.2_1938169_1938703_-	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|95aa|up_8|NC_004347.2_1938828_1939113_-	pfam00226, DnaJ, DnaJ domain	NA|712aa|up_7|NC_004347.2_1940874_1943010_+	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|82aa|up_6|NC_004347.2_1942996_1943242_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|641aa|up_5|NC_004347.2_1943243_1945166_+	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed	NA|611aa|up_4|NC_004347.2_1945194_1947027_+	pfam11949, DUF3466, Protein of unknown function (DUF3466)	NA|59aa|up_3|NC_004347.2_1947214_1947391_+	PRK14563, PRK14563, ribosome modulation factor; Provisional	NA|172aa|up_2|NC_004347.2_1947499_1948015_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|578aa|up_1|NC_004347.2_1948088_1949822_-	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]	NA|200aa|up_0|NC_004347.2_1950158_1950758_+	NA	NA|215aa|down_0|NC_004347.2_1951807_1952452_+	PRK09483, PRK09483, response regulator; Provisional	NA|610aa|down_1|NC_004347.2_1952558_1954388_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|183aa|down_2|NC_004347.2_1954435_1954984_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|92aa|down_3|NC_004347.2_1955967_1956243_-	cd13831, HU, histone-like DNA-binding protein HU	NA|240aa|down_4|NC_004347.2_1956433_1957153_-	NA	NA|303aa|down_5|NC_004347.2_1957197_1958106_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|277aa|down_6|NC_004347.2_1958102_1958933_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|223aa|down_7|NC_004347.2_1959026_1959695_-	PRK11239, PRK11239, hypothetical protein; Provisional	NA|280aa|down_8|NC_004347.2_1959861_1960701_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|51aa|down_9|NC_004347.2_1961177_1961330_+	NA
GCF_000146165.2_ASM14616v2	NC_004347	Shewanella oneidensis MR-1, complete sequence	5	4223842-4223938	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	GGTGAAGCCCCACGACTTTGATT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|49aa|up_1|NC_004347.2_4221141_4221288_-,NA|703aa|up_0|NC_004347.2_4221453_4223562_+,NA	NA|388aa|up_9|NC_004347.2_4211250_4212414_-	TIGR02080, Cystathionine_gamma-synthase, O-succinylhomoserine (thiol)-lyase	NA|105aa|up_8|NC_004347.2_4212635_4212950_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|248aa|up_7|NC_004347.2_4213046_4213790_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|315aa|up_6|NC_004347.2_4213941_4214886_-	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|189aa|up_5|NC_004347.2_4214888_4215455_-	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|761aa|up_4|NC_004347.2_4215467_4217750_-	PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional	NA|218aa|up_3|NC_004347.2_4218394_4219048_-	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|368aa|up_2|NC_004347.2_4219702_4220806_+	PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|49aa|up_1|NC_004347.2_4221141_4221288_-	NA	NA|703aa|up_0|NC_004347.2_4221453_4223562_+	NA	NA|262aa|down_0|NC_004347.2_4224046_4224832_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|238aa|down_1|NC_004347.2_4225096_4225810_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|482aa|down_2|NC_004347.2_4226201_4227647_+	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|78aa|down_3|NC_004347.2_4228109_4228343_-	pfam03889, DUF331, Domain of unknown function	NA|282aa|down_4|NC_004347.2_4228631_4229477_+	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|714aa|down_5|NC_004347.2_4229642_4231784_+	TIGR01778, TonB-copper, TonB-dependent copper receptor	NA|448aa|down_6|NC_004347.2_4231901_4233245_-	PRK11040, PRK11040, peptidase PmbA; Provisional	NA|178aa|down_7|NC_004347.2_4233406_4233940_+	PRK05255, PRK05255, ribosome-associated protein	NA|827aa|down_8|NC_004347.2_4233968_4236449_+	pfam02369, Big_1, Bacterial Ig-like domain (group 1)	NA|444aa|down_9|NC_004347.2_4236503_4237835_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
GCF_000146165.2_ASM14616v2	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	1	65657-65767	1	CRISPRCasFinder	no			Orphan	GCTCCAAATTGAAGGGGCAGTATCCTTCAGATACAACTAGGC	42	1	1	65699-65725	NC_004349.1_51679-51653	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|118aa|up_7|NC_004349.1_59526_59880_-,NA|175aa|up_0|NC_004349.1_65041_65566_-,NA	NA|104aa|up_9|NC_004349.1_57967_58279_-	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|253aa|up_8|NC_004349.1_58733_59492_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|118aa|up_7|NC_004349.1_59526_59880_-	NA	NA|101aa|up_6|NC_004349.1_59872_60175_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|212aa|up_5|NC_004349.1_60345_60981_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|81aa|up_4|NC_004349.1_61180_61423_+	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family	NA|100aa|up_3|NC_004349.1_61415_61715_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|162aa|up_2|NC_004349.1_62109_62595_-	pfam15428, Imm26, Immunity protein 26	NA|401aa|up_1|NC_004349.1_63338_64541_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|175aa|up_0|NC_004349.1_65041_65566_-	NA	NA|197aa|down_0|NC_004349.1_66534_67125_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|87aa|down_1|NC_004349.1_67294_67555_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|104aa|down_2|NC_004349.1_67554_67866_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|387aa|down_3|NC_004349.1_69313_70473_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|400aa|down_4|NC_004349.1_73411_74611_+	TIGR03453, partition_RepA, plasmid partitioning protein RepA	NA|365aa|down_5|NC_004349.1_74610_75705_+	pfam08775, ParB, ParB family	NA|253aa|down_6|NC_004349.1_75736_76495_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|132aa|down_7|NC_004349.1_77038_77434_+	pfam07885, Ion_trans_2, Ion channel	NA|578aa|down_8|NC_004349.1_77712_79446_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|605aa|down_9|NC_004349.1_79655_81470_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases
