The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	125324	190100	4969811	tail,transposase	Staphylococcus_phage(20.0%)	60	NA	NA
WP_011070523.1|125324_126302_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011070524.1|126480_127458_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011070525.1|128106_128979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070526.1|129239_129632_+	DUF1090 domain-containing protein	NA	NA	NA	NA	NA
WP_011070527.1|129649_130228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011070528.1|130436_131705_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_011070529.1|131701_132325_-	LysE family translocator	NA	NA	NA	NA	NA
WP_011070530.1|132351_132912_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_011070531.1|133039_133489_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_011070532.1|133510_134311_-	NRDE family protein	NA	NA	NA	NA	NA
WP_011070533.1|134373_136014_-	metal transporter	NA	NA	NA	NA	NA
WP_011070534.1|136309_136903_+	YhgN family NAAT transporter	NA	NA	NA	NA	NA
WP_011070535.1|137206_140014_+	immune inhibitor A	NA	NA	NA	NA	NA
WP_011070536.1|140070_140640_-	chorismate lyase	NA	NA	NA	NA	NA
WP_011070537.1|140741_141152_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_011070538.1|141211_142309_+	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA	NA
WP_011070539.1|142351_142642_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
WP_011070540.1|142668_143331_-	Bax inhibitor-1 family protein	NA	NA	NA	NA	NA
WP_011070541.1|143380_144142_-	molybdopterin-synthase adenylyltransferase MoeB	NA	A0A1V0SIK8	Klosneuvirus	31.6	5.2e-15
WP_011070542.1|144153_145407_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_011070543.1|145711_146248_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_011070544.1|146605_149839_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	38.9	1.5e-23
WP_011070545.1|150202_150856_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	43.2	1.6e-41
WP_011070546.1|151518_153654_+	oligopeptidase B	NA	F2Y2Z7	Organic_Lake_phycodnavirus	25.7	6.7e-36
WP_011070547.1|153664_154045_+	GIY-YIG nuclease family protein	NA	A0A0C5AS36	Spodoptera_frugiperda_granulovirus	46.8	1.6e-09
WP_011070548.1|154155_155370_-|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_011070549.1|155714_156200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925586.1|156319_157000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070551.1|157059_157206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070552.1|158399_159176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011070553.1|159447_160215_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011070554.1|160240_162232_-	peptidase M14	NA	NA	NA	NA	NA
WP_011070555.1|162365_163490_-	FUSC family protein	NA	NA	NA	NA	NA
WP_011070556.1|164021_165260_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_011070557.1|165736_166093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070558.1|166257_167817_-	AbgT family transporter	NA	NA	NA	NA	NA
WP_011070559.1|168070_169612_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	50.1	6.8e-139
WP_011070560.1|169813_170674_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_011070561.1|170699_171098_-	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA	NA
WP_011070562.1|171349_172276_+	type II secretion system protein GspC	NA	NA	NA	NA	NA
WP_011070563.1|172300_174415_+	type II secretion system secretin GspD	NA	O80264	Vibrio_phage	30.3	3.4e-32
WP_011070564.1|174411_175977_+	type II secretion system ATPase GspE	NA	NA	NA	NA	NA
WP_011070565.1|175980_177204_+	type II secretion system inner membrane protein GspF	NA	NA	NA	NA	NA
WP_011070566.1|177278_177713_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA	NA
WP_011070567.1|177714_178287_+	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA	NA
WP_011070568.1|178273_178642_+	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA	NA
WP_011070569.1|178622_179390_+	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA	NA
WP_011070570.1|179386_180385_+	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA	NA
WP_011070571.1|180433_181621_+	type II secretion system protein GspL	NA	NA	NA	NA	NA
WP_011070572.1|181622_182099_+	type II secretion system protein M	NA	NA	NA	NA	NA
WP_011070573.1|182113_182875_+	type II secretion system protein N	NA	NA	NA	NA	NA
WP_011070574.1|182934_183597_-	GMP/IMP nucleotidase	NA	NA	NA	NA	NA
WP_164925807.1|183727_184327_+	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	NA	NA	NA	NA	NA
WP_011070576.1|184304_186314_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_011070577.1|186313_187441_+	sulfotransferase family protein	NA	NA	NA	NA	NA
WP_011070578.1|187552_187840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070579.1|187836_188319_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011070580.1|188404_188956_+|tail	phage tail protein	tail	A0A221J6G5	Arthrobacter_phage	32.4	1.6e-13
WP_011070581.1|188995_189526_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_011070582.1|189554_190100_+|tail	phage tail protein	tail	A0A0U4JYA4	Arthrobacter_phage	32.0	1.6e-13
>prophage 2
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	364484	403300	4969811	transposase,integrase	uncultured_Caudovirales_phage(21.43%)	32	401980:402001	406810:406831
WP_011070721.1|364484_365687_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.1	6.6e-81
WP_164925809.1|365724_367647_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	44.3	9.3e-154
WP_011070722.1|367846_368230_-	RidA family protein	NA	NA	NA	NA	NA
WP_011070723.1|368254_370360_-	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	35.8	6.0e-13
WP_007651394.1|370403_370682_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_011070724.1|370740_371364_-	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	35.4	4.7e-22
WP_011070725.1|372002_373493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070726.1|373651_374533_+	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_164925592.1|374516_375581_+	phosphotransferase	NA	NA	NA	NA	NA
WP_011070728.1|375686_377111_+	MFS transporter	NA	NA	NA	NA	NA
WP_011070729.1|377126_377945_-	sulfotransferase family protein	NA	NA	NA	NA	NA
WP_011070730.1|378249_379365_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	24.9	4.2e-05
WP_011070731.1|379585_382753_+	DUF3427 domain-containing protein	NA	Q9T1H9	Lactobacillus_phage	27.9	7.6e-28
WP_011070732.1|382764_383652_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011070733.1|383886_384378_+	DMT family transporter	NA	NA	NA	NA	NA
WP_011070734.1|384400_384862_+	DMT family transporter	NA	NA	NA	NA	NA
WP_164925810.1|385038_385746_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_164925593.1|386155_387124_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	50.0	6.5e-55
WP_141135407.1|387096_388256_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925811.1|388341_388770_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	52.5	6.4e-39
WP_011070738.1|389168_389462_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_005054087.1|389567_390770_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011070739.1|390809_391523_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_011070740.1|391525_394627_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	27.0	4.2e-79
WP_011070741.1|394896_395895_-	virulence protein RhuM/Fic/DOC family protein	NA	Q9JMN3	Wolbachia_phage	34.8	1.0e-23
WP_011070742.1|395982_397302_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011070743.1|397291_399121_-	type I restriction-modification system subunit M	NA	A0A220A2U4	Liberibacter_phage	43.5	1.9e-100
WP_164925594.1|399549_400200_-	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_011070745.1|400328_400553_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_011070746.1|400539_400788_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_164925595.1|400895_401582_-	hypothetical protein	NA	NA	NA	NA	NA
401980:402001	attL	GTGTGTAACTCGGTGTGTAACT	NA	NA	NA	NA
WP_011070748.1|402010_403300_+|integrase	site-specific integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	42.3	4.4e-91
WP_011070748.1|402010_403300_+|integrase	site-specific integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	42.3	4.4e-91
406810:406831	attR	GTGTGTAACTCGGTGTGTAACT	NA	NA	NA	NA
>prophage 4
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	675978	726876	4969811	capsid,head,transposase,protease	Vibrio_phage(26.09%)	54	NA	NA
WP_011070976.1|675978_676584_+	regulatory protein GemA	NA	Q6QIE7	Burkholderia_phage	37.8	5.4e-15
WP_011070977.1|676576_677032_+	transcriptional regulator	NA	A0A0C4UQZ9	Shigella_phage	40.0	5.3e-15
WP_164925819.1|677238_677898_+	DUF4145 domain-containing protein	NA	NA	NA	NA	NA
WP_011070979.1|677933_678491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070980.1|678529_678958_+	Mu phage protein	NA	NA	NA	NA	NA
WP_141135407.1|679106_680265_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011070981.1|680316_680646_+	phage protein	NA	NA	NA	NA	NA
WP_011070982.1|680635_681193_+	lysozyme	NA	A0A0A1I5L5	Burkholderia_phage	46.3	3.4e-24
WP_011070983.1|681189_681759_+	Mu phage conserved phage protein	NA	NA	NA	NA	NA
WP_011070984.1|681855_682068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011070985.1|682064_682412_+	DUF2730 domain-containing protein	NA	NA	NA	NA	NA
WP_011070986.1|682411_682708_+	phage protein	NA	A0A2I7S9D8	Vibrio_phage	44.8	6.9e-16
WP_011070987.1|682710_682983_+	phage protein	NA	NA	NA	NA	NA
WP_011070988.1|682972_683539_+	DUF3486 family protein	NA	A0A0C4UQU5	Shigella_phage	57.6	1.1e-46
WP_011070989.1|683538_685179_+	hypothetical protein	NA	A0A2I7S9C5	Vibrio_phage	58.8	1.5e-160
WP_011070990.1|685178_686780_+	DUF935 domain-containing protein	NA	H1ZZE2	Pseudomonas_virus	46.2	2.5e-120
WP_011070991.1|686772_688110_+|capsid	minor capsid protein	capsid	A0A0C4UQY9	Shigella_phage	42.9	1.3e-98
WP_011070993.1|688257_688710_+	phage virion morphogenesis protein	NA	A0A0C4UR01	Shigella_phage	46.2	6.0e-19
WP_011070994.1|688754_689648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011070995.1|689863_690100_+	phage protein	NA	NA	NA	NA	NA
WP_011070996.1|690145_690760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925612.1|690867_692157_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_011070998.1|692233_693403_+|protease	phage protease	protease	C9DGP0	Escherichia_phage	41.1	9.6e-61
WP_011070999.1|693402_694323_+|head	Mu-like prophage major head subunit gpT family protein	head	C9DGP2	Escherichia_phage	49.8	1.3e-81
WP_011071000.1|694393_694840_+	phage protein	NA	A0A0C4UQZ0	Shigella_phage	39.3	1.7e-10
WP_165443317.1|694854_695283_+	DUF1320 family protein	NA	A0A0M3LP98	Mannheimia_phage	42.9	1.5e-19
WP_011071002.1|695282_695726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071003.1|695754_696501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071004.1|696620_700547_+	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	40.6	2.6e-49
WP_011071005.1|700543_700909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071006.1|700921_703417_+	hypothetical protein	NA	A0A2I7QXQ4	Vibrio_phage	49.8	2.8e-219
WP_164925613.1|703428_703908_+	hypothetical protein	NA	A0A2I7QXS4	Vibrio_phage	44.2	1.9e-23
WP_141135407.1|703880_705040_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925614.1|705158_705623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071007.1|705615_705918_+	phage protein	NA	NA	NA	NA	NA
WP_011071008.1|705914_707714_+	hypothetical protein	NA	A0A088C4B7	Shewanella_sp._phage	46.9	3.7e-104
WP_011071009.1|707710_707932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071010.1|708074_708836_+	DNA adenine methylase	NA	A2I2Y7	Vibrio_virus	62.7	1.1e-94
WP_011071011.1|709236_709641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071012.1|709745_710777_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_011071013.1|710917_712063_-	galactokinase	NA	NA	NA	NA	NA
WP_011071014.1|712377_714021_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_011071015.1|714173_716006_-	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_011071016.1|716002_716326_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
WP_011071017.1|716548_717112_+	FxsA family protein	NA	NA	NA	NA	NA
WP_011071018.1|717278_717647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071019.1|718090_719080_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011071020.1|719083_720442_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_011071021.1|720669_720960_+	co-chaperone GroES	NA	A0A221S331	uncultured_virus	41.5	1.6e-12
WP_011071022.1|721018_722656_+	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	66.3	1.2e-178
WP_011071023.1|723067_723304_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011071024.1|723307_724609_+	HipA domain-containing protein	NA	NA	NA	NA	NA
WP_164925615.1|725101_725668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071025.1|725664_726876_-|transposase	IS256-like element ISSod18 family transposase	transposase	A0A218MNI5	uncultured_virus	48.1	2.2e-52
>prophage 5
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	998572	1065014	4969811	protease,tRNA,transposase	Acinetobacter_phage(18.18%)	48	NA	NA
WP_164925630.1|998572_999648_-|transposase	IS3-like element ISSod2 family transposase	transposase	S5WIU1	Leptospira_phage	39.4	2.2e-43
WP_011071244.1|1000300_1001290_-	2-hydroxyacid dehydrogenase	NA	M1HHP3	Acanthocystis_turfacea_Chlorella_virus	44.6	1.5e-62
WP_011071245.1|1001533_1003324_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	35.3	7.8e-62
WP_011071246.1|1003824_1004235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071247.1|1004231_1004765_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011071248.1|1004820_1005111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071249.1|1005207_1005393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071250.1|1005491_1006916_-	cytochrome c biosynthesis protein	NA	NA	NA	NA	NA
WP_011071251.1|1007130_1007556_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_011071252.1|1007684_1008182_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011071253.1|1008246_1009422_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011071254.1|1009601_1010762_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A2K5B251	Erysipelothrix_phage	28.5	8.7e-22
WP_141135407.1|1011483_1012642_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_172966545.1|1012682_1013642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071255.1|1013819_1014971_+	chromate efflux transporter	NA	NA	NA	NA	NA
WP_011071256.1|1015100_1016765_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.2	6.2e-21
WP_011071257.1|1016860_1021147_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_164925829.1|1021394_1022282_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011071259.1|1022286_1023978_-	amidohydrolase	NA	NA	NA	NA	NA
WP_164925631.1|1024448_1025546_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	9.1e-05
WP_011071261.1|1025576_1027079_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	38.9	1.8e-88
WP_011071262.1|1027190_1027631_-	DUF2846 domain-containing protein	NA	NA	NA	NA	NA
WP_011071263.1|1028081_1028582_-	lactoylglutathione lyase family protein	NA	NA	NA	NA	NA
WP_011071264.1|1028751_1029684_+	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	39.1	5.7e-08
WP_011071265.1|1029977_1030943_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_164925830.1|1031132_1032710_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_011071267.1|1032740_1033838_-	calcium:proton antiporter	NA	NA	NA	NA	NA
WP_011071268.1|1034033_1036346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071269.1|1036509_1038243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071270.1|1038252_1040523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071271.1|1040788_1041751_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_011071272.1|1042149_1043730_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_011071273.1|1043986_1044865_+|transposase	IS982-like element ISSod20 family transposase	transposase	NA	NA	NA	NA
WP_011071274.1|1045280_1046744_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_011071275.1|1046740_1048285_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_011071276.1|1048383_1050231_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_011071277.1|1050227_1050536_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_011071278.1|1050532_1051084_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_011071279.1|1051094_1051637_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_011071280.1|1051645_1052614_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_011071281.1|1052610_1055340_-	NADH-quinone oxidoreductase subunit NuoG	NA	NA	NA	NA	NA
WP_011071282.1|1055381_1056767_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_011071283.1|1056763_1057306_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_011071284.1|1057387_1059193_-	NADH-quinone oxidoreductase subunit C/D	NA	NA	NA	NA	NA
WP_011071285.1|1059196_1059871_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_011071286.1|1059900_1060305_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_141135407.1|1062063_1063223_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011070721.1|1063811_1065014_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.1	6.6e-81
>prophage 6
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	1451112	1590130	4969811	transposase,integrase	Vibrio_phage(19.05%)	106	1451071:1451130	1588903:1590139
1451071:1451130	attL	AAGGGCTATCCACTTAGCACGACCAACCACTATATATTGTGGTTATCGATTTTTAATTGA	NA	NA	NA	NA
WP_011071113.1|1451112_1452069_-|transposase	IS1595-like element ISSod11 family transposase	transposase	NA	NA	NA	NA
1451071:1451130	attL	AAGGGCTATCCACTTAGCACGACCAACCACTATATATTGTGGTTATCGATTTTTAATTGA	NA	NA	NA	NA
WP_164925842.1|1452110_1452461_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_164925649.1|1452652_1453852_-	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_011071603.1|1453832_1454270_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_011071604.1|1455130_1456045_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_011071605.1|1456245_1457820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071606.1|1457878_1458559_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_011071607.1|1458601_1459876_-	serine dehydratase subunit alpha family protein	NA	NA	NA	NA	NA
WP_011071608.1|1459898_1460282_-	RidA family protein	NA	NA	NA	NA	NA
WP_011071609.1|1460997_1462137_+	transglutaminase family protein	NA	NA	NA	NA	NA
WP_011071610.1|1462153_1462471_+	Hg(II) uptake system permease component MerT family	NA	NA	NA	NA	NA
WP_011071611.1|1462467_1462776_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_011071612.1|1462813_1465777_-	DEAD/DEAH box helicase family protein	NA	Q5YA94	Bacillus_phage	29.1	2.5e-28
WP_011071613.1|1465780_1466359_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011071614.1|1466545_1467289_-	periplasmic RmlC-type Cupin domain family protein	NA	NA	NA	NA	NA
WP_011071615.1|1467458_1468541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071616.1|1468649_1469783_-	outer membrane beta barrel protein	NA	NA	NA	NA	NA
WP_011071617.1|1469822_1470194_-	cytochrome c3 family protein	NA	NA	NA	NA	NA
WP_011071618.1|1470197_1471718_-	flavocytochrome c	NA	NA	NA	NA	NA
WP_011071619.1|1472051_1472834_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011071620.1|1473205_1473805_-	response regulator	NA	NA	NA	NA	NA
WP_164925843.1|1473779_1475489_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA	NA
WP_011071622.1|1475757_1476885_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_011071623.1|1477071_1478424_+	FMN-binding protein	NA	NA	NA	NA	NA
WP_011071624.1|1478441_1479479_+	porin	NA	NA	NA	NA	NA
WP_164925650.1|1479604_1481371_-	flavocytochrome c	NA	M1HTN0	Paramecium_bursaria_Chlorella_virus	31.0	8.5e-45
WP_011071626.1|1481491_1482445_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011071627.1|1482707_1484945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071628.1|1484955_1486698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925651.1|1487349_1487682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071629.1|1488211_1489168_+	DmsE family decaheme c-type cytochrome	NA	NA	NA	NA	NA
WP_011071630.1|1489182_1491171_+	MtrB/PioB family decaheme-associated outer membrane protein	NA	NA	NA	NA	NA
WP_011071631.1|1491190_1493701_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	42.1	3.0e-176
WP_011071632.1|1493714_1494389_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	54.8	3.5e-63
WP_011071633.1|1494446_1495112_+	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_011071634.1|1495122_1495590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071635.1|1495731_1497363_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.9	1.1e-17
WP_164925845.1|1497977_1498766_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	53.6	7.6e-78
WP_011071113.1|1498832_1499789_+|transposase	IS1595-like element ISSod11 family transposase	transposase	NA	NA	NA	NA
WP_005054087.1|1499996_1501199_-|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_164925652.1|1501305_1501749_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1V0E8G8	Vibrio_phage	37.1	9.0e-20
WP_164925653.1|1502401_1503232_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_011071637.1|1503493_1504570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071638.1|1504688_1504901_+	AlpA family phage regulatory protein	NA	A0A1V0E8E5	Vibrio_phage	46.6	9.3e-07
WP_011071639.1|1504939_1506409_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_011071640.1|1506724_1507402_+	inovirus Gp2 family protein	NA	NA	NA	NA	NA
WP_011071641.1|1507548_1507842_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011071643.1|1508399_1509122_-	lecithin retinol acyltransferase family protein	NA	NA	NA	NA	NA
WP_011071644.1|1509201_1509768_-|integrase	site-specific integrase	integrase	W8CYP1	Bacillus_phage	33.7	6.1e-21
WP_011071645.1|1509876_1510284_-	DUF2787 domain-containing protein	NA	NA	NA	NA	NA
WP_011071646.1|1510470_1510884_-	DUF2787 domain-containing protein	NA	NA	NA	NA	NA
WP_164925654.1|1510882_1511080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071647.1|1511069_1511444_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
WP_011071648.1|1511586_1511949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071649.1|1511989_1512463_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_011071113.1|1512538_1513495_-|transposase	IS1595-like element ISSod11 family transposase	transposase	NA	NA	NA	NA
WP_011071650.1|1514244_1516299_+	N-6 DNA methylase	NA	B3GAM1	uncultured_virus	32.3	2.9e-20
1512497:1513536	attR	AAGGGCTATCCACTTAGCACGACCAACCACTATATATTGTGGTTATCGATTTTTAATTGATTGGTACGTTATCGGCTTAGAACGCACTGCTTGCTCAAGCAACCTGTAGAATAATAATCCCCGAGAATCTGACTTTCTTCTGTTGAAGCGAAATGTAAATTCATCTAAATAATAATCAAGTTGCTTAGCCTTTACCGCACCTTGATACGTACCTAAAAGCCATCTTTTACATAATGATGAGACTCGATGCACCCCAGCCATTGTTTCATGTGCAGGTACAGATGAACCTAAATGCACCATCCGATTATGCTTATATCCTTTTTTGTCTATTTGCTTGTATGCTTGAGAACCATCACTACAAATTGTGCTACCAGGCTCTATTACATCTTGAATGAATTGATGGATATGTTCTTTAGTTGCACTTTCTACTTGCCTTAAACGTATCCGCCCAAATCCAGAGGGTGATAGCAGCTCAACAGCCACCAAAACTATAGCTTTACGCTTACCCTGTTGATTTTTAATAGATGATTTTGGAATGACCCCACCTATTAATGTTTCGTCAACCTCTACGATGCCGGACAGTTTATCTCTTTCAGGGTCAACCATGGCATATCTTAACTTGTGCATTAAAGACCAAGCAGTTTGATAACTCCCAAGACCTAATAGCCTTTGGACTCCAAGAGCGCTGACCCCATTCTTTTGATTTGTAATAAACCAGACAGCTGCAAACCAACTTTTCATGGGGGTTCTTGTTTTGTCAAAAAGTGTACTTGATGTTACTGAACACTGAAAACGGCAAGCATGACATTTTAACTTGCCATTACTTAACTGATAAGGTGATTGATGGCTCGAACAGCTTGGGCAAATGAATCCGTTTGGCCAACGAAGTGCGTAAAGGTAGCTAGTGCAAGATTGTTCATCATGAAACCAATCAACAAATTCGTCCCAATTTGTAGGGTAATCGACGCCAGCTTTTAATAAATACGATGAAGTTTTCATTACTACATATTGACACTGGTGGCGCTAAATGGATAGCCCTT	NA	NA	NA	NA
WP_011071651.1|1516295_1517591_+	AAA family ATPase	NA	NA	NA	NA	NA
1512497:1513536	attR	AAGGGCTATCCACTTAGCACGACCAACCACTATATATTGTGGTTATCGATTTTTAATTGATTGGTACGTTATCGGCTTAGAACGCACTGCTTGCTCAAGCAACCTGTAGAATAATAATCCCCGAGAATCTGACTTTCTTCTGTTGAAGCGAAATGTAAATTCATCTAAATAATAATCAAGTTGCTTAGCCTTTACCGCACCTTGATACGTACCTAAAAGCCATCTTTTACATAATGATGAGACTCGATGCACCCCAGCCATTGTTTCATGTGCAGGTACAGATGAACCTAAATGCACCATCCGATTATGCTTATATCCTTTTTTGTCTATTTGCTTGTATGCTTGAGAACCATCACTACAAATTGTGCTACCAGGCTCTATTACATCTTGAATGAATTGATGGATATGTTCTTTAGTTGCACTTTCTACTTGCCTTAAACGTATCCGCCCAAATCCAGAGGGTGATAGCAGCTCAACAGCCACCAAAACTATAGCTTTACGCTTACCCTGTTGATTTTTAATAGATGATTTTGGAATGACCCCACCTATTAATGTTTCGTCAACCTCTACGATGCCGGACAGTTTATCTCTTTCAGGGTCAACCATGGCATATCTTAACTTGTGCATTAAAGACCAAGCAGTTTGATAACTCCCAAGACCTAATAGCCTTTGGACTCCAAGAGCGCTGACCCCATTCTTTTGATTTGTAATAAACCAGACAGCTGCAAACCAACTTTTCATGGGGGTTCTTGTTTTGTCAAAAAGTGTACTTGATGTTACTGAACACTGAAAACGGCAAGCATGACATTTTAACTTGCCATTACTTAACTGATAAGGTGATTGATGGCTCGAACAGCTTGGGCAAATGAATCCGTTTGGCCAACGAAGTGCGTAAAGGTAGCTAGTGCAAGATTGTTCATCATGAAACCAATCAACAAATTCGTCCCAATTTGTAGGGTAATCGACGCCAGCTTTTAATAAATACGATGAAGTTTTCATTACTACATATTGACACTGGTGGCGCTAAATGGATAGCCCTT	NA	NA	NA	NA
WP_011071652.1|1517593_1518256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071653.1|1518252_1519662_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011071654.1|1519671_1523802_+	protein kinase	NA	A0A2R8FG14	Cedratvirus	25.7	6.9e-13
WP_011071655.1|1523798_1525445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141135407.1|1530016_1531175_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925655.1|1531266_1532103_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011071656.1|1533025_1534087_+	macro domain-containing protein	NA	A0A0B4N0V6	Escherichia_phage	37.5	1.0e-13
WP_011071657.1|1534141_1534396_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011071658.1|1534618_1534951_+	membrane protein	NA	NA	NA	NA	NA
WP_164925656.1|1535389_1535554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071660.1|1536628_1537876_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	50.1	1.0e-116
WP_011071661.1|1538571_1539063_-	SsrA-binding protein SmpB	NA	NA	NA	NA	NA
WP_011071662.1|1539327_1539765_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_011071663.1|1539754_1540090_+	RnfH family protein	NA	NA	NA	NA	NA
WP_164925846.1|1540181_1540706_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_011071665.1|1541110_1541902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071666.1|1541946_1542162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925657.1|1542210_1543953_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.4	3.1e-15
WP_011071668.1|1544162_1545932_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_011071669.1|1545996_1548444_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011071670.1|1549278_1550928_+	malate synthase A	NA	NA	NA	NA	NA
WP_011071671.1|1551062_1552385_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_011071672.1|1553034_1553403_+	acyl-CoA thioesterase	NA	A0A292GK23	Xanthomonas_phage	53.8	1.9e-31
WP_011071673.1|1553457_1553670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071674.1|1554159_1554531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071675.1|1555249_1556398_-	L-threonine dehydrogenase	NA	NA	NA	NA	NA
WP_011071676.1|1556810_1557443_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	31.8	3.8e-11
WP_011071677.1|1557950_1560260_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
WP_164925658.1|1560273_1562514_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_011071679.1|1562510_1564763_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_011071680.1|1564765_1567279_+	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	42.5	2.4e-16
WP_011071681.1|1567398_1568661_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_164925847.1|1568728_1570318_+	glycogen/starch synthase	NA	NA	NA	NA	NA
WP_011071683.1|1570427_1573451_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	36.8	1.6e-22
WP_011071685.1|1575195_1576293_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_011071686.1|1576306_1577083_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011071687.1|1577427_1577949_+	DUF3087 domain-containing protein	NA	NA	NA	NA	NA
WP_011071688.1|1578181_1579726_-	peptide MFS transporter	NA	NA	NA	NA	NA
WP_011071689.1|1580145_1581492_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_011071690.1|1581711_1583223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071691.1|1583431_1583797_+	VOC family protein	NA	NA	NA	NA	NA
WP_011071692.1|1583884_1584394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071693.1|1584692_1585670_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011071694.1|1585956_1587075_+|transposase	IS91-like element ISSod25 family transposase	transposase	NA	NA	NA	NA
WP_011071695.1|1587417_1588065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011071696.1|1588142_1588607_+	DUF2846 domain-containing protein	NA	NA	NA	NA	NA
WP_164925659.1|1588587_1588917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141135407.1|1588971_1590130_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
1588903:1590139	attR	ATTGTTCTGGTCTAATCCCATCGGACACTTAATTTTGAGACAGTATGGTCAATAAATTAAGAGGTCTATATGAGTCTGAAAAAATCACATAAGAGTTATCCGCAGGCATTTAAAGATGAAGCCGTCTTGATGGTGCTGGAGCAAGGTTATAGCGTTGCCGATGCGGCAAAGTCTCTTGGAGTTAGCACGAGCCTGCTTTACAACTGGAAGGAAAAACACGAAGCCCTGCAACAAGGCATCACCTTAGAAGAGTCTGAGCGTGATGAGTTGAAGCGATTGCGTAGAGAAAACAAAGAATTACGCATGGAGAAAGAAATTCTAAAAAAGGCAAGCGCCTTCTTTGCGAGAGAAATGAAGTAAGATTTCGTTTCATCAAACTGCAATCTCACCTGTTTCCCATAACACTGTTATGTCGAGTAATGAGTGTCAGTAAGTCAGGCTATTACGATTGGCATAAACGCCCTGCAAACGTGATAAGCGTTGAAACACTGAAGCTTTATCGCCTTGTTCGACAGCTATTTAAGCAAAGTCGAGGCAGCTTAGGGAATCGTGAAATGGTGAAGAAATTGCGCAAGGAAGGCTACCAGGTTGGTCGCTATCTCGTTCGTAAAATTATGCACCGCCTTCGACTCAAAGCAACCCAGCGATGTGCTTACAAGGTGACGACACAGCGAAAACACTCAGATGCAGTGGCTGATAACCTGTTAAACATGAACTTTAATCCAGTATCGGCTAATCAGGTCTGGGCGGGTGACGTGACCTATTTAAAGACGGGTGAAGGCTGGATGTACTTAGCTGTGGTGATGGATTTATATTCACGCCGGATTGTGGGATGGCGCATAGACAAACGCATGACCACAGATTTGATATCCAAGGCATTAATAAAAGCCTACAACCTGCGACAACCAGCGCGAGGGCTGGTATTTCACAGTGACCGAGGCTCGCAATATACCAGTAAACAATTCGGTAGGCTGCTATCGAGCTATGGTATCCGAGCCAGCATGGGTGATGTGGGTGCGTGTTGGGATAATGCCGTTGTTGAGCGATTCTTTGGTAGCTTGAAACACGATTGGATTTTTAAAGTTGCTCAACCAACAAGGGAGTTTATGAAGCAAGATGTGACGGCTTACATCAAATATTACAACTTGGAGCGACTTCATTCTGCTAATAACGATCTGTCACCTGTAGAGTTTGAGAATTCTCAAGTAAAAGTGTCCAGTTTGGGTTGACCAGTACA	NA	NA	NA	NA
>prophage 7
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	2078481	2133729	4969811	tRNA,transposase,integrase	Klosneuvirus(16.67%)	49	2081727:2081741	2135937:2135951
WP_011070548.1|2078481_2079696_+|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_011072067.1|2079921_2080950_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_011072068.1|2080946_2081825_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
2081727:2081741	attL	TTACTCGATTTACTC	NA	NA	NA	NA
WP_011072069.1|2081841_2082249_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_011072070.1|2082503_2083496_+	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	NA	NA	NA	NA	NA
WP_011072071.1|2083548_2084262_+	NUDIX hydrolase	NA	A0A1V0SIB1	Klosneuvirus	32.0	6.8e-09
WP_164925858.1|2084636_2085524_+	ribose-phosphate diphosphokinase	NA	A0A2H4YGS6	Raoultella_phage	39.9	1.1e-37
WP_011072073.1|2085534_2087007_+	nicotinate phosphoribosyltransferase	NA	A0A218KC49	Bacillus_phage	54.5	2.6e-148
WP_011072074.1|2087731_2087905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072075.1|2088416_2089109_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_164925679.1|2089101_2089770_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_011072077.1|2089892_2090444_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011072078.1|2090540_2091155_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011072079.1|2091377_2092322_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	30.3	1.8e-33
WP_011072080.1|2092512_2093154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072081.1|2093205_2093565_-	DUF2750 domain-containing protein	NA	NA	NA	NA	NA
WP_164925859.1|2093989_2095276_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_011072083.1|2095498_2095987_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_011072084.1|2096497_2098426_-	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_011072085.1|2098654_2098882_+	DUF3389 domain-containing protein	NA	NA	NA	NA	NA
WP_164925860.1|2098956_2099628_+	carboxylesterase	NA	NA	NA	NA	NA
WP_011072087.1|2099991_2101701_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_011072088.1|2102084_2102987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072089.1|2104259_2104619_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
WP_011072090.1|2104760_2105708_-|tRNA	tRNA dihydrouridine(16) synthase DusC	tRNA	NA	NA	NA	NA
WP_011072091.1|2105976_2106408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072092.1|2106499_2107339_+	DUF692 domain-containing protein	NA	NA	NA	NA	NA
WP_011072093.1|2107338_2108079_+	DUF2063 domain-containing protein	NA	NA	NA	NA	NA
WP_011072095.1|2108462_2108831_+	YbaN family protein	NA	NA	NA	NA	NA
WP_011072096.1|2109290_2109842_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.8	3.9e-28
WP_011072097.1|2109973_2112982_+	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	38.2	9.4e-44
WP_011072098.1|2113211_2113541_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_011072099.1|2113553_2114153_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_011072100.1|2114426_2116340_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	35.9	7.9e-113
WP_011072101.1|2116459_2117323_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011072102.1|2117463_2118108_+	adenylate kinase	NA	NA	NA	NA	NA
WP_164925680.1|2118187_2119234_+	ferrochelatase	NA	NA	NA	NA	NA
WP_011072104.1|2119426_2120731_+	inosine/guanosine kinase	NA	NA	NA	NA	NA
WP_011072105.1|2120955_2121786_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	47.1	1.7e-59
WP_011072106.1|2121846_2122371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072107.1|2122532_2124008_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_141135407.1|2124413_2125572_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925861.1|2125973_2126558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925630.1|2127293_2128369_-|transposase	IS3-like element ISSod2 family transposase	transposase	S5WIU1	Leptospira_phage	39.4	2.2e-43
WP_141135407.1|2128885_2130045_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925681.1|2130082_2130751_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011072109.1|2130847_2131402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011071694.1|2131768_2132887_-|transposase	IS91-like element ISSod25 family transposase	transposase	NA	NA	NA	NA
WP_011072110.1|2132865_2133729_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2135937:2135951	attR	GAGTAAATCGAGTAA	NA	NA	NA	NA
>prophage 8
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	2235734	2344162	4969811	tRNA,transposase,integrase	Acinetobacter_phage(23.53%)	76	2278543:2278602	2323325:2324754
WP_011072192.1|2235734_2236856_-|transposase	ISAs1-like element ISSod22 family transposase	transposase	NA	NA	NA	NA
WP_141135407.1|2237096_2238256_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925687.1|2238304_2239141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925688.1|2239167_2240802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141135407.1|2240856_2242015_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011072193.1|2242230_2244831_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_011072194.1|2245146_2245779_+	YchE family NAAT transporter	NA	NA	NA	NA	NA
WP_164925689.1|2246849_2247011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072195.1|2247106_2248138_+|transposase	IS630-like element ISSod16 family transposase	transposase	NA	NA	NA	NA
WP_164925690.1|2248162_2249395_+	glutamate decarboxylase	NA	NA	NA	NA	NA
WP_011072196.1|2249446_2251135_+	aspartate-alanine antiporter	NA	NA	NA	NA	NA
WP_011072197.1|2251602_2252148_+	heme NO-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011072198.1|2252140_2253076_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_164925865.1|2253072_2253453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925866.1|2253514_2255653_-	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	24.8	9.4e-22
WP_011072201.1|2255682_2259483_-	exodeoxyribonuclease V subunit beta	NA	NA	NA	NA	NA
WP_011072202.1|2259479_2263292_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA	NA
WP_164925867.1|2263401_2265573_-	DUF3488 domain-containing protein	NA	NA	NA	NA	NA
WP_164925868.1|2265596_2266637_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_011072205.1|2266735_2267647_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011072206.1|2269284_2269668_-	VOC family protein	NA	NA	NA	NA	NA
WP_011072207.1|2269785_2271906_-	alpha-amylase family protein	NA	NA	NA	NA	NA
WP_164925691.1|2271938_2272181_-	cyclomaltodextrinase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_164925692.1|2272755_2272884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925630.1|2273493_2274569_-|transposase	IS3-like element ISSod2 family transposase	transposase	S5WIU1	Leptospira_phage	39.4	2.2e-43
WP_011072208.1|2277678_2278542_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_011071694.1|2278520_2279639_+|transposase	IS91-like element ISSod25 family transposase	transposase	NA	NA	NA	NA
2278543:2278602	attL	GCGATATCCTTCAGCAGCACTTAGCCCACTATCAACAGCAGCATAAACTGACCGAGCAGC	NA	NA	NA	NA
WP_164925693.1|2280117_2280453_+	FRG domain-containing protein	NA	Q9AZ51	Lactococcus_phage	40.0	1.2e-05
WP_141135407.1|2280507_2281666_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925694.1|2281804_2282071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925695.1|2282446_2282995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141135407.1|2283279_2284439_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011072210.1|2285018_2285981_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
WP_011072211.1|2286171_2287962_-	DUF3413 domain-containing protein	NA	NA	NA	NA	NA
WP_011072212.1|2288028_2288247_-	YejL family protein	NA	NA	NA	NA	NA
WP_011072213.1|2288324_2289353_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	36.5	2.0e-62
WP_011072214.1|2289448_2290450_-	cytochrome-c peroxidase	NA	NA	NA	NA	NA
WP_011072215.1|2290978_2291854_+	6-carboxytetrahydropterin synthase	NA	I6W6Z1	Vibriophage	27.9	1.3e-14
WP_164925869.1|2291909_2292857_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2R3ZZL7	Microbacterium_phage	40.6	1.2e-05
WP_011072217.1|2292910_2293171_-	DUF5062 family protein	NA	NA	NA	NA	NA
WP_011072218.1|2293371_2293974_-	VOC family protein	NA	NA	NA	NA	NA
WP_011072219.1|2294032_2294548_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_011072220.1|2294919_2296476_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_011071113.1|2298232_2299189_-|transposase	IS1595-like element ISSod11 family transposase	transposase	NA	NA	NA	NA
WP_011072221.1|2300039_2301494_+	molecular chaperone	NA	NA	NA	NA	NA
WP_011072222.1|2301511_2302009_+	CreA family protein	NA	NA	NA	NA	NA
WP_011072223.1|2302116_2303316_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_011072224.1|2303441_2305601_-	proteobacterial dedicated sortase system histidine kinase	NA	NA	NA	NA	NA
WP_011072225.1|2305633_2306326_-	proteobacterial dedicated sortase system response regulator	NA	NA	NA	NA	NA
WP_011072226.1|2306558_2307368_+	sortase-associated OmpA-like protein PdsO	NA	NA	NA	NA	NA
WP_011072227.1|2307416_2309699_+	marine proteobacterial sortase target protein	NA	A0A2K9L4P5	Tupanvirus	21.1	2.6e-22
WP_164925697.1|2309719_2310487_+	class GN sortase	NA	NA	NA	NA	NA
WP_011072229.1|2310823_2311849_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	24.7	3.6e-11
WP_164925698.1|2312010_2313636_+	M28 family peptidase	NA	NA	NA	NA	NA
WP_164925870.1|2313691_2314528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072233.1|2315973_2316432_-	DUF413 domain-containing protein	NA	NA	NA	NA	NA
WP_011072234.1|2316540_2317401_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA	NA
WP_011072235.1|2317497_2317869_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_164925699.1|2318117_2319029_+	DNA ligase	NA	F2Y2Y2	Organic_Lake_phycodnavirus	35.4	2.4e-35
WP_172966576.1|2320162_2320603_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_011071113.1|2321104_2322061_-|transposase	IS1595-like element ISSod11 family transposase	transposase	NA	NA	NA	NA
WP_011072208.1|2322460_2323324_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_011071694.1|2323302_2324421_+|transposase	IS91-like element ISSod25 family transposase	transposase	NA	NA	NA	NA
WP_011072238.1|2324801_2326424_+	alpha-glucosidase	NA	NA	NA	NA	NA
2323325:2324754	attR	GCGATATCCTTCAGCAGCACTTAGCCCACTATCAACAGCAGCATAAACTGACCGAGCAGCAAGCTTTGGTCTGCCAGCATATTCAACAGTGTCGCACGCAAACCTTAGGGATGCAGCACTGGCGTTGTGATACTTGCCAGTATGAGCAGCAGGTGTGTTGCTCCTGTGGTGACCGGCATTGCCCTCGTTGTCAGGGAAGGCAGACGCAAGCGTGGATTGCTACGCAGCAGGCGCAAGTCTTGCCTTGCCGCTATTTCCATTTGGTTTTTACCTTACCCCACGAGTTGAACATCTTGGCGCACTATGCTGCCAAGCCGCTCTATAGCGCGTTGTTTGAATCGGTGTGGCAGACGCTGGCGCAGTTTGGCATGAAACGGAAACACCTTCAGGGTCAATTGGGTTGCACTATGGTGCTGCACACGTGGGGGCAGACCTTGAGTCAACATATCCACTTGCATTGCTTAATCCCTGGTGGGGTGGTGACGTCAGCGGGAGATTGGCATGGCGTGAAAACGGATTATCTGTTTCCGGTTAAAGCCTTGTCCACCGTGTATCGGGCTAAGCTATTACGGGCACTGCGACAACATGAGCTGGCTATTCCAGCGGCTGAAACCTTAATGGCAAAGCCGTGGTGTGTTTACAGCAAAGCGTGTCTAAGCCGCGCCGAAACCGTGGTGGAATACCTTGGGCGTTATACCCGTAAAGGCATGTTGCATGAATCAAGAATTGCAGAAGTGACCGCAGACCATGTCCGTTTTAACTACAAAGACTATCGTGACGGTCAGCAGCATAAGCAAATGTGGCTAAGCTGTGATGAGTTTATCCGCCGTTATTTACTGCATGTGTTGCCCAAAGGGCTGATGCGAGTGAGACATTTTGGTTTTCTTGCCAATGCTTGCCGCCGCAAAAAGCTGGCGCTCATCCTGCGGCAACTACGTAAGCCGCAGGTGGTATTGGCGAGTCCTTTGGTTAAGAAGGACTGTTTGTGGTCATGTCCGCAATGCCAGTTAGGTCATTTGCAGTTTATTGGGTTGATAAGACCGCAGTCGGTAGTGATGATAAACAGCCAAGGTCAGCCAGTACGTATGTCAGGATAACCACGCCCTCAAGACGTAGCGTAACCGACAGCGAAAAGCAGCCAGCCTTATGGGGTTAAGCCGATGAGGGGATAGGGTATGAGTGTCAGCCTGAATCTGGGGCCAAAATGCTGTCAACCAAGGTCAACAATCAGTCAGAAGTGAGTGTAAAAGAATGAGAAAGCAAAAACGATATCAAGTGATTACCCTCCAAACTGTATAAAAAACCGCTACCGCAAAAAAACAAATTCCTATAGCATCATTTATACCAATTGACATGGATGTGGCAGCGGCCAAGTCCAACAAGCGATTTATGCCCTGCAAACAGCGCAGCGCATAAATACTAAGACGTTA	NA	NA	NA	NA
WP_011072239.1|2327974_2329189_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_011072240.1|2329351_2331610_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	35.9	9.3e-20
WP_011072241.1|2331690_2332701_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_011072242.1|2332945_2334346_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	36.0	2.5e-79
WP_011072243.1|2334541_2334883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072244.1|2334900_2335488_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_011072245.1|2335515_2336919_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	46.6	2.9e-48
WP_011072246.1|2337041_2338592_+	fumarate hydratase	NA	NA	NA	NA	NA
WP_164925700.1|2338817_2340869_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_011072248.1|2341035_2341494_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011072249.1|2341549_2342485_+	M14 family metallocarboxypeptidase	NA	NA	NA	NA	NA
WP_011070548.1|2342947_2344162_-|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
>prophage 9
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	2376467	2429009	4969811	protease,tRNA,transposase	uncultured_virus(16.0%)	47	NA	NA
WP_011072273.1|2376467_2377193_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_011072274.1|2377239_2378061_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_011072275.1|2378414_2378876_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_011072276.1|2378954_2380169_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	31.8	5.1e-33
WP_011072277.1|2380206_2380590_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	77.4	1.0e-51
WP_011072278.1|2380604_2380928_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	43.0	4.1e-22
WP_011072279.1|2380943_2381468_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_011072280.1|2381535_2383398_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	39.3	7.7e-105
WP_011072281.1|2383406_2383742_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_011072282.1|2383897_2384797_+	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	33.6	1.9e-40
WP_011072283.1|2384867_2385065_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_005054087.1|2385141_2386344_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011072284.1|2386581_2386749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072285.1|2386979_2387411_+	nucleoside-diphosphate kinase	NA	K7YW26	Megavirus	40.9	4.8e-18
WP_011072286.1|2387575_2388601_+|transposase	IS630-like element ISSod10 family transposase	transposase	M4M9P8	Vibrio_phage	71.7	2.5e-12
WP_011072287.1|2388816_2389260_+	Hsp20 family protein	NA	A0A2L0V0Y9	Agrobacterium_phage	49.5	2.4e-20
WP_011072288.1|2389367_2389862_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_011072289.1|2389861_2391580_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.8	1.7e-58
WP_011072290.1|2392030_2393254_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_011072291.1|2393727_2395602_+	choice-of-anchor I family protein	NA	NA	NA	NA	NA
WP_011072292.1|2395759_2397118_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_011070548.1|2397322_2398537_-|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_164925703.1|2398643_2399564_-|transposase	IS1595-like element ISSod11 family transposase	transposase	NA	NA	NA	NA
WP_164925704.1|2399605_2400232_+	LysE family transporter	NA	NA	NA	NA	NA
WP_011072293.1|2400456_2402214_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	26.5	1.1e-15
WP_011072295.1|2403599_2404601_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_011072296.1|2405207_2406410_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011072297.1|2407401_2408781_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_011072298.1|2408814_2409435_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	38.2	4.6e-22
WP_011072299.1|2409443_2409644_-	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA	NA
WP_011072301.1|2410459_2412388_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	1.1e-130
WP_011072302.1|2412391_2412934_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.1	3.4e-13
WP_011072303.1|2413019_2413214_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_006081652.1|2413230_2413587_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_011072304.1|2413768_2414722_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.2	2.4e-62
WP_011072305.1|2414973_2416089_-	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_007647640.1|2416269_2416776_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
WP_011072306.1|2417096_2419832_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.5	9.4e-83
WP_011072307.1|2419901_2420522_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_011072308.1|2420530_2421862_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.2	6.4e-77
WP_011072309.1|2421854_2422229_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	36.5	1.0e-08
WP_011072310.1|2422247_2423534_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.8	6.3e-98
WP_011072312.1|2423753_2424305_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_141135407.1|2425117_2426276_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925705.1|2426212_2427403_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	77.5	5.5e-72
WP_193378420.1|2427435_2428611_+	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.4	6.3e-12
WP_011072313.1|2428643_2429009_+	response regulator	NA	W8CYM9	Bacillus_phage	38.8	4.2e-15
>prophage 10
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	2788310	2825620	4969811	protease,tail,transposase,head,plate	Vibrio_phage(95.24%)	54	NA	NA
WP_011072597.1|2788310_2789057_-	helix-turn-helix transcriptional regulator	NA	A0A2I7S9A5	Vibrio_phage	60.2	1.6e-77
WP_011072598.1|2789209_2789434_+	helix-turn-helix domain-containing protein	NA	M1PVU4	Vibrio_phage	58.8	2.3e-16
WP_011072599.1|2789445_2791455_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2I7S9A8	Vibrio_phage	70.5	1.2e-276
WP_011072600.1|2791499_2792456_+	AAA family ATPase	NA	M4M9P4	Vibrio_phage	71.1	5.7e-120
WP_011072601.1|2792463_2792718_+	phage protein	NA	NA	NA	NA	NA
WP_164925723.1|2792717_2793035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072603.1|2793038_2793266_+	phage protein	NA	NA	NA	NA	NA
WP_011072604.1|2793268_2793589_+	Mu phage protein Kil	NA	NA	NA	NA	NA
WP_011072605.1|2793603_2794224_+	DUF3164 family protein	NA	M4MHH7	Vibrio_phage	70.6	1.5e-76
WP_011072607.1|2794488_2794725_+	phage protein	NA	M4MCS5	Vibrio_phage	48.7	5.7e-13
WP_011072608.1|2794708_2794891_+	phage protein	NA	NA	NA	NA	NA
WP_011072609.1|2794883_2795555_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	38.2	3.3e-29
WP_011072610.1|2795638_2795932_+	phage protein	NA	NA	NA	NA	NA
WP_011072611.1|2795967_2796225_+	hypothetical protein	NA	A0A2I7S9D2	Vibrio_phage	67.2	4.1e-17
WP_011072612.1|2796234_2796801_+	phage protein	NA	NA	NA	NA	NA
WP_011072613.1|2796809_2797343_+	regulatory protein GemA	NA	A0A2I7S9B8	Vibrio_phage	60.0	6.7e-54
WP_164925724.1|2797329_2797614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072615.1|2797703_2798141_+	Mu phage middle operon regulator Mor	NA	M4MHG9	Vibrio_phage	65.6	2.1e-45
WP_011072616.1|2798157_2798352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072617.1|2798398_2798845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072618.1|2798921_2799512_+	N-acetylmuramidase	NA	A0A2I7S9B9	Vibrio_phage	63.0	2.2e-61
WP_011072619.1|2799511_2799772_+	phage protein	NA	NA	NA	NA	NA
WP_011072620.1|2799756_2800365_+	hypothetical protein	NA	M4MB79	Vibrio_phage	59.2	1.5e-44
WP_011072621.1|2800364_2800580_+	TraR/DksA family transcriptional regulator	NA	M4MHG5	Vibrio_phage	55.7	3.6e-14
WP_011072622.1|2800579_2800882_+	DUF2730 domain-containing protein	NA	M4M9P7	Vibrio_phage	74.0	1.6e-36
WP_011072623.1|2800890_2801181_+	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	78.1	7.7e-36
WP_011072624.1|2801190_2801772_+	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	71.1	3.9e-63
WP_011072625.1|2801771_2801966_+	hypothetical protein	NA	M4MB75	Vibrio_phage	66.1	6.5e-15
WP_011072626.1|2801968_2803528_+	hypothetical protein	NA	M4MHG0	Vibrio_phage	76.2	3.5e-228
WP_011072627.1|2803524_2805090_+	DUF935 domain-containing protein	NA	M4M9P3	Vibrio_phage	74.2	1.1e-224
WP_011072628.1|2805082_2805862_+	phage protein	NA	M4M9M5	Vibrio_phage	74.0	6.3e-117
WP_164925725.1|2806083_2806287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072630.1|2806273_2806501_+	phage protein	NA	A0A1V0E828	Vibrio_phage	70.1	1.1e-16
WP_011072631.1|2806696_2807656_+|protease	Mu phage protease GpI	protease	M1Q578	Vibrio_phage	52.5	1.5e-91
WP_011072632.1|2807655_2808555_+|head	Mu-like prophage major head subunit gpT family protein	head	A0A2I7S9D0	Vibrio_phage	79.9	9.7e-138
WP_011072633.1|2808612_2808861_+	phage protein	NA	M4MHF5	Vibrio_phage	57.3	1.3e-20
WP_011072634.1|2808864_2809425_+	phage protein	NA	M4M9N9	Vibrio_phage	56.7	2.4e-49
WP_011072635.1|2809463_2810123_+	phage protein	NA	M4M9M3	Vibrio_phage	51.5	1.1e-16
WP_011072636.1|2810154_2810586_+	DUF1320 domain-containing protein	NA	M1PVU7	Vibrio_phage	77.8	1.1e-57
WP_011072637.1|2810585_2811137_+	phage virion morphogenesis protein	NA	A0A2I7S9D7	Vibrio_phage	77.7	1.4e-75
WP_011072638.1|2811133_2811724_+	hypothetical protein	NA	M4MHF0	Vibrio_phage	67.3	3.3e-78
WP_011072639.1|2811740_2811905_+	DUF2635 domain-containing protein	NA	A0A2I7S9K4	Vibrio_phage	52.2	2.9e-08
WP_011072640.1|2811907_2813389_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	M1Q565	Vibrio_phage	84.4	2.1e-238
WP_011072641.1|2813405_2813759_+|tail	phage tail tube protein	tail	A0A2I7S9D5	Vibrio_phage	76.9	1.1e-47
WP_011072642.1|2813758_2814118_+|tail	phage tail assembly protein	tail	A0A2I7S9E0	Vibrio_phage	64.1	1.7e-37
WP_164925882.1|2814363_2815905_+	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	55.7	1.1e-136
WP_011072644.1|2815926_2817243_+	DNA circularization N-terminal domain-containing protein	NA	M4M9N2	Vibrio_phage	68.3	9.2e-169
WP_011072645.1|2817242_2818322_+	hypothetical protein	NA	M1PVV2	Vibrio_phage	77.9	1.0e-165
WP_011072646.1|2818315_2818963_+|plate	phage baseplate assembly protein	plate	M1Q572	Vibrio_phage	68.2	9.3e-74
WP_011072647.1|2818974_2819421_+	phage GP46 family protein	NA	M4MB61	Vibrio_phage	72.7	6.7e-55
WP_011072648.1|2819410_2820478_+|plate	baseplate J/gp47 family protein	plate	M4MHE1	Vibrio_phage	79.7	6.3e-160
WP_011072649.1|2820462_2821047_+	YmfQ family protein	NA	M4M9M8	Vibrio_phage	79.8	8.4e-90
WP_011072650.1|2821112_2822840_+	SGNH/GDSL hydrolase family protein	NA	M4M9L1	Vibrio_phage	47.5	8.7e-26
WP_011072651.1|2822983_2825620_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	34.6	4.0e-91
>prophage 11
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	3038316	3126253	4969811	protease,tail,terminase,portal,transposase,head,capsid,integrase	Vibrio_phage(31.71%)	100	3037776:3037790	3130139:3130153
3037776:3037790	attL	CCGACAATGGTGCCA	NA	NA	NA	NA
WP_011071731.1|3038316_3039075_+|transposase	IS5-like element ISSod6 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	36.4	7.9e-16
WP_011072816.1|3040156_3041131_-	formate transporter FocA	NA	NA	NA	NA	NA
WP_011072817.1|3042165_3044448_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.7	1.2e-168
WP_011072818.1|3044511_3045252_+	pyruvate formate lyase 1-activating protein	NA	NA	NA	NA	NA
WP_164925888.1|3045268_3045751_-	DUF412 family protein	NA	NA	NA	NA	NA
WP_011072820.1|3045852_3047052_+	acetate kinase	NA	NA	NA	NA	NA
WP_011072821.1|3047173_3049327_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_011072822.1|3049789_3050221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925730.1|3050484_3050736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072824.1|3050822_3051734_-	S-adenosylmethionine-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011072825.1|3051740_3052847_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_011072826.1|3052945_3053314_+	dihydroneopterin triphosphate 2'-epimerase	NA	NA	NA	NA	NA
WP_011072827.1|3053395_3054286_+	TIGR01777 family protein	NA	NA	NA	NA	NA
WP_011072828.1|3054832_3056056_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_011072829.1|3056119_3056782_-	signal peptidase I	NA	NA	NA	NA	NA
WP_011072830.1|3057044_3059552_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_011072831.1|3059555_3060317_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.8	7.9e-32
WP_011072832.1|3060369_3060969_+	arylesterase	NA	NA	NA	NA	NA
WP_011072833.1|3061113_3062181_+	DUF3083 family protein	NA	NA	NA	NA	NA
WP_011072834.1|3062437_3065161_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
WP_011072835.1|3065279_3066452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072836.1|3066683_3067745_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_164925731.1|3067938_3068955_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	27.8	1.7e-21
WP_011072838.1|3069067_3071551_-	lipase	NA	NA	NA	NA	NA
WP_011072839.1|3071811_3072549_+	YciK family oxidoreductase	NA	NA	NA	NA	NA
WP_011072840.1|3072640_3073612_-	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_011072841.1|3073725_3074601_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA	NA
WP_011072842.1|3074869_3075412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072843.1|3075412_3076123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072845.1|3076446_3080472_-	DUF1983 domain-containing protein	NA	A0A1B0VMH5	Pseudomonas_phage	53.9	0.0e+00
WP_011072846.1|3080476_3081106_-|tail	tail assembly protein	tail	A0A1V0E8A0	Vibrio_phage	66.0	1.1e-63
WP_011072847.1|3081182_3081749_-	Lambda phage transcriptional regulator	NA	NA	NA	NA	NA
WP_011072848.1|3082151_3083747_-	Lambda phage structural protein	NA	NA	NA	NA	NA
WP_011072849.1|3083758_3084664_-|tail	Lambda phage tail fiber protein	tail	NA	NA	NA	NA
WP_164925732.1|3084703_3085498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072851.1|3085494_3085767_-	Lambda phage protein of known function	NA	NA	NA	NA	NA
WP_011072852.1|3085849_3086563_-	C40 family peptidase	NA	A0A1V1FD38	Vibrio_phage	53.6	5.3e-70
WP_011072853.1|3086614_3087340_-|tail	phage minor tail protein L	tail	A0A1V0E876	Vibrio_phage	64.9	7.4e-96
WP_011072854.1|3087332_3087992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072855.1|3087994_3090109_-	Lambda phage protein of known function	NA	A0A1B1ITM8	uncultured_Mediterranean_phage	28.7	4.7e-58
WP_011072856.1|3090142_3090478_-|tail	phage tail protein	tail	A0A1V1FDP8	Vibrio_phage	60.7	3.5e-32
WP_011072857.1|3090477_3093222_-|tail	phage tail tape measure protein	tail	A0A1V0E821	Vibrio_phage	48.5	5.7e-221
WP_011072858.1|3093293_3093446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072859.1|3093484_3093979_-|tail	phage tail assembly chaperone family protein, TAC	tail	B5WZT2	Pseudomonas_phage	36.8	2.8e-06
WP_011072860.1|3094066_3094540_-|tail	tail protein	tail	A0A1V0E8B3	Vibrio_phage	64.7	8.1e-51
WP_011072861.1|3094634_3095003_-	DUF3168 domain-containing protein	NA	A0A1V0E8A7	Vibrio_phage	61.5	2.1e-38
WP_011072862.1|3094999_3095461_-	HK97 gp10 family phage protein	NA	A0A1V0E895	Vibrio_phage	61.1	3.8e-45
WP_011072863.1|3095463_3095700_-	phage protein	NA	NA	NA	NA	NA
WP_011072864.1|3095702_3096065_-|head	phage head closure protein	head	Q9XJT0	Pseudomonas_phage	57.1	9.9e-33
WP_011072865.1|3096064_3096361_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1V0E887	Vibrio_phage	55.9	1.2e-23
WP_011072866.1|3096382_3096667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072867.1|3096755_3097946_-|capsid	phage major capsid protein	capsid	Q9XJT3	Pseudomonas_phage	62.9	3.4e-130
WP_011072868.1|3097958_3098813_-|protease	Clp protease ClpP	protease	A0A1V0E8B8	Vibrio_phage	57.9	1.2e-81
WP_011072869.1|3098822_3100121_-|portal	phage portal protein	portal	A0A0U4IIV7	Pseudomonas_phage	62.1	1.5e-139
WP_011072870.1|3100117_3100279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165443313.1|3100278_3102024_-|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	46.6	5.3e-140
WP_165443314.1|3101980_3102493_-|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	53.6	5.9e-39
WP_011072872.1|3102504_3102834_-	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	55.2	1.4e-30
WP_011072873.1|3102830_3103190_-	phage protein	NA	NA	NA	NA	NA
WP_011072874.1|3103182_3103452_-	hypothetical protein	NA	A0A1B1ITN8	uncultured_Mediterranean_phage	49.3	7.4e-09
WP_011072875.1|3103568_3104093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072876.1|3104247_3104760_-	lysozyme	NA	I6NW41	Burkholderia_virus	52.9	3.3e-42
WP_011072877.1|3104763_3105027_-	Lambda phage pyridoxal phosphate dependent enzyme	NA	D4HTY9	Vibrio_phage	55.8	5.0e-18
WP_011072878.1|3105184_3105475_-	Lambda phage conserved protein	NA	NA	NA	NA	NA
WP_011072879.1|3105503_3105839_-	phage protein	NA	NA	NA	NA	NA
WP_011072880.1|3105864_3106188_-	DUF4406 domain-containing protein	NA	O64365	Escherichia_phage	51.7	6.6e-20
WP_011072882.1|3106444_3106696_-	phage protein	NA	NA	NA	NA	NA
WP_011072883.1|3106803_3108003_-|integrase	site-specific integrase	integrase	A0A2D1GND4	Pseudomonas_phage	36.7	1.2e-66
WP_011072884.1|3108002_3108602_-	phage protein	NA	NA	NA	NA	NA
WP_011072885.1|3108601_3109168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925889.1|3109168_3109609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072887.1|3109743_3110259_-	hypothetical protein	NA	A0A1B1ITL2	uncultured_Mediterranean_phage	41.6	4.4e-26
WP_011072888.1|3110255_3110648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072889.1|3110631_3111192_-	hypothetical protein	NA	A0A2D1GNB3	Pseudomonas_phage	30.2	3.8e-07
WP_011072890.1|3111163_3112234_-	replication protein	NA	A0A1I9KG10	Aeromonas_phage	44.7	9.4e-55
WP_011072891.1|3112290_3112584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072892.1|3112583_3112778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011072894.1|3113307_3113535_-	helix-turn-helix transcriptional regulator	NA	A0A1P8DTF8	Proteus_phage	44.9	6.7e-11
WP_011072895.1|3113663_3114482_+	helix-turn-helix transcriptional regulator	NA	A0A0A0YR73	Pseudomonas_phage	43.9	2.2e-51
WP_011072896.1|3114502_3114925_+	Lambda phage lipoprotein	NA	A0A1B0VMH3	Pseudomonas_phage	38.5	4.3e-19
WP_011072897.1|3114947_3115253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072898.1|3115884_3116073_+	phage protein	NA	NA	NA	NA	NA
WP_011072899.1|3116134_3116878_+	methyltransferase	NA	A0A1P8VVC9	Erythrobacter_phage	35.3	1.8e-28
WP_164925582.1|3117008_3117245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072901.1|3117305_3117719_+	phage protein	NA	NA	NA	NA	NA
WP_011072902.1|3117711_3117993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072903.1|3118076_3118241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072904.1|3118250_3118838_+	ead/Ea22-like family protein	NA	NA	NA	NA	NA
WP_011072905.1|3118834_3119224_+	hypothetical protein	NA	A0A1I9SEY3	Klebsiella_phage	55.9	9.7e-26
WP_011072906.1|3119220_3119892_+	hypothetical protein	NA	A0A059WLH8	Vibrio_phage	40.3	4.7e-36
WP_011072907.1|3119888_3120236_+	hypothetical protein	NA	A0A2I7RQ60	Vibrio_phage	43.4	1.2e-08
WP_011072908.1|3120232_3121198_+	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	45.9	1.3e-76
WP_011072909.1|3121194_3121692_+	phage protein	NA	NA	NA	NA	NA
WP_011072910.1|3121688_3123362_+	DNA cytosine methyltransferase	NA	A0A1I9KFD6	Aeromonas_phage	55.0	1.7e-167
WP_011072913.1|3123706_3124120_+	phage protein	NA	NA	NA	NA	NA
WP_011072914.1|3124119_3124395_+	phage protein	NA	NA	NA	NA	NA
WP_164925733.1|3124378_3124582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011072916.1|3124578_3124776_+	phage protein	NA	NA	NA	NA	NA
WP_011072917.1|3124775_3124988_+	Lambda phage DNA excisionase Xis	NA	NA	NA	NA	NA
WP_011072918.1|3124993_3126253_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	40.0	1.2e-77
3130139:3130153	attR	CCGACAATGGTGCCA	NA	NA	NA	NA
>prophage 12
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	3569758	3584788	4969811	tRNA	uncultured_Mediterranean_phage(25.0%)	13	NA	NA
WP_011073284.1|3569758_3572383_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.0	4.6e-79
WP_164925902.1|3572661_3573084_-	RecX family transcriptional regulator	NA	NA	NA	NA	NA
WP_011073286.1|3573158_3574232_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.9	1.4e-111
WP_011073287.1|3574612_3577183_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.2	6.0e-31
WP_011073288.1|3577265_3578246_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	32.9	1.4e-33
WP_011073289.1|3578327_3579224_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV79	Clostridium_phage	31.9	1.2e-10
WP_011073290.1|3579281_3579917_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	7.1e-34
WP_011073291.1|3579913_3580663_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.1	1.2e-72
WP_011073292.1|3580659_3581772_-|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_011073293.1|3581800_3582280_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_011073294.1|3582332_3583082_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011073295.1|3583092_3583392_-	cell division protein FtsB	NA	NA	NA	NA	NA
WP_011073296.1|3583492_3584788_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	58.7	2.3e-132
>prophage 13
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	3587898	3674069	4969811	transposase	Staphylococcus_phage(22.22%)	60	NA	NA
WP_005054087.1|3587898_3589101_-|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011072944.1|3589378_3590002_+	suppressor of fused domain protein	NA	NA	NA	NA	NA
WP_011072943.1|3591029_3592007_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011073299.1|3592488_3593247_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_164925750.1|3593569_3593890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005054087.1|3594234_3595437_-|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011073301.1|3596505_3597717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011073302.1|3598099_3600307_-	GTP diphosphokinase	NA	NA	NA	NA	NA
WP_011073303.1|3600497_3601847_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	27.4	3.8e-37
WP_011073304.1|3601949_3604757_+	two-component sensor histidine kinase BarA	NA	A0A1V0SGX0	Hokovirus	30.5	5.9e-56
WP_011073305.1|3604731_3605331_+	YjaG family protein	NA	NA	NA	NA	NA
WP_011073306.1|3605486_3605726_+	DUF3319 domain-containing protein	NA	NA	NA	NA	NA
WP_011073307.1|3605722_3606622_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011073308.1|3606896_3607856_+	AEC family transporter	NA	NA	NA	NA	NA
WP_011073309.1|3607985_3609644_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_011073310.1|3609780_3610275_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
WP_011073311.1|3610274_3611231_-	thiamine-phosphate kinase	NA	NA	NA	NA	NA
WP_011073312.1|3611309_3611714_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_011073313.1|3611728_3612205_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.7	1.0e-29
WP_011073314.1|3612345_3613449_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	40.5	5.3e-69
WP_011073315.1|3613515_3614172_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	33.5	6.6e-27
WP_011073316.1|3614179_3615325_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.5	5.2e-51
WP_011073317.1|3615398_3615848_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_011073318.1|3616038_3617292_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.1	2.7e-101
WP_011073319.1|3617482_3619150_+	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	27.7	5.6e-38
WP_011073320.1|3619276_3620200_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011073321.1|3620398_3621298_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_164925903.1|3621421_3622075_+	DsbA family protein	NA	NA	NA	NA	NA
WP_011073323.1|3622202_3622538_-	TapY2 family type IVa secretion system protein	NA	NA	NA	NA	NA
WP_011071076.1|3624621_3625380_+|transposase	IS5-like element ISSod6 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	36.4	7.9e-16
WP_011073324.1|3627607_3628762_+	metallophosphoesterase	NA	A0A1V0SFZ7	Hokovirus	27.3	2.0e-18
WP_011073325.1|3628937_3629732_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011073326.1|3629931_3631041_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011073327.1|3631040_3634181_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_011073328.1|3634283_3635432_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_011073329.1|3635855_3636623_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011073330.1|3636802_3637741_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_011073331.1|3638077_3638551_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_011073332.1|3638563_3639832_-	HD-GYP domain-containing protein	NA	NA	NA	NA	NA
WP_011073333.1|3639968_3643112_-	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.8	1.3e-67
WP_011073334.1|3643125_3644364_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011073335.1|3644723_3645344_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011073336.1|3645449_3645878_-	OsmC family protein	NA	NA	NA	NA	NA
WP_011073337.1|3646150_3647647_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011073338.1|3647928_3649269_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_011073339.1|3650065_3651280_+|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.7	1.8e-123
WP_011073340.1|3652176_3652551_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011073341.1|3652722_3653445_+	TIGR02001 family outer membrane protein	NA	NA	NA	NA	NA
WP_011073342.1|3653565_3654873_-	sugar MFS transporter	NA	NA	NA	NA	NA
WP_011073343.1|3655213_3656401_-	DUF5009 domain-containing protein	NA	NA	NA	NA	NA
WP_011073344.1|3656539_3657676_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_011073345.1|3657720_3658719_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_011073346.1|3658785_3659688_-	ATPase	NA	NA	NA	NA	NA
WP_011073347.1|3659911_3662602_-	carbohydate-binding domain-containing protein	NA	A0A076G5S5	Staphylococcus_phage	23.3	1.0e-09
WP_011073348.1|3664757_3665447_-	SapC family protein	NA	NA	NA	NA	NA
WP_011073349.1|3665482_3667006_-	tryptophan 7-halogenase	NA	A0A1Z1LWL6	Synechococcus_phage	30.8	3.8e-49
WP_011073350.1|3667102_3669727_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011073351.1|3670152_3671169_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.4	2.2e-29
WP_011073352.1|3671368_3672658_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005054087.1|3672866_3674069_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
>prophage 14
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	3698989	3768910	4969811	transposase	uncultured_Caudovirales_phage(14.29%)	54	NA	NA
WP_011073373.1|3698989_3700030_+|transposase	IS481-like element ISSod13 family transposase	transposase	A0A077SLK2	Escherichia_phage	84.4	3.0e-175
WP_011071337.1|3700145_3701468_-|transposase	IS4-like element ISSod7 family transposase	transposase	NA	NA	NA	NA
WP_164925751.1|3701753_3702866_+	OmpA family protein	NA	NA	NA	NA	NA
WP_011073375.1|3703110_3704067_+	transaldolase	NA	A0A222YW60	Synechococcus_phage	28.3	1.4e-12
WP_011073376.1|3704087_3705725_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_011073377.1|3705940_3706126_+	DUF3545 family protein	NA	NA	NA	NA	NA
WP_011073378.1|3706207_3706744_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_011073379.1|3706961_3707711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073380.1|3707703_3708306_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_011073381.1|3708353_3710219_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_164925752.1|3710431_3712186_+	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	25.7	1.2e-30
WP_011073383.1|3712448_3712940_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.1	1.2e-17
WP_011073384.1|3712939_3714037_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_011073385.1|3714185_3715448_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
WP_011073386.1|3715499_3716117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925753.1|3716539_3717001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073388.1|3717000_3718650_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_011073389.1|3718887_3721737_-	insulinase family protein	NA	NA	NA	NA	NA
WP_011073390.1|3721878_3722304_-	DedA family protein	NA	NA	NA	NA	NA
WP_011073391.1|3722591_3723833_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_011073392.1|3723900_3724524_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA	NA
WP_011073393.1|3724744_3726895_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_011073394.1|3727578_3729636_+	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA	NA
WP_011070548.1|3730775_3731990_-|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_141135407.1|3732348_3733507_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011073395.1|3733675_3734314_+	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
WP_011073396.1|3740692_3741502_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011073397.1|3741592_3742057_+	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
WP_011073398.1|3742478_3745052_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	34.4	5.5e-125
WP_011073399.1|3745170_3745944_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_011073400.1|3745947_3746919_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_011073401.1|3747041_3747803_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_011073402.1|3748529_3750155_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.2	5.4e-38
WP_011073403.1|3750258_3750972_-	pseudouridine synthase	NA	NA	NA	NA	NA
WP_011073404.1|3750993_3751614_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_011073405.1|3751760_3752375_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011073406.1|3752414_3752831_+	VOC family protein	NA	NA	NA	NA	NA
WP_011073407.1|3752992_3753463_+	YcxB family protein	NA	NA	NA	NA	NA
WP_011073408.1|3753547_3754117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073409.1|3754834_3755071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011073410.1|3755420_3756284_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_164925905.1|3756310_3756703_+	DUF3019 domain-containing protein	NA	NA	NA	NA	NA
WP_011073412.1|3756702_3757416_+	response regulator	NA	W8CYM9	Bacillus_phage	34.5	1.6e-34
WP_011073413.1|3757424_3758693_+	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	25.6	7.8e-16
WP_011073414.1|3758848_3759157_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_011073415.1|3759304_3759841_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_011073416.1|3759969_3760848_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	40.1	1.8e-51
WP_011073417.1|3761068_3762076_+	thiosulfate ABC transporter substrate-binding protein CysP	NA	NA	NA	NA	NA
WP_011073418.1|3762251_3763097_+	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA	NA
WP_011073419.1|3763106_3763976_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
WP_011073420.1|3763972_3765103_+	TOBE-like domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.9	1.1e-32
WP_164925754.1|3765225_3766362_-	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
WP_011073421.1|3766394_3767597_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.1	8.6e-81
WP_141135407.1|3767750_3768910_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
>prophage 15
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	3975439	4026725	4969811	tRNA,transposase,integrase	uncultured_virus(30.77%)	47	3976837:3976855	4023568:4023586
WP_005054087.1|3975439_3976642_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
3976837:3976855	attL	TGACACAGAATTATGAACA	NA	NA	NA	NA
WP_011073591.1|3977383_3978232_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	43.3	2.9e-51
WP_011073592.1|3978295_3979543_-	DUF819 family protein	NA	NA	NA	NA	NA
WP_011073593.1|3979684_3980473_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011073594.1|3980472_3980868_-	SirB2 family protein	NA	NA	NA	NA	NA
WP_011073595.1|3980986_3981400_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011073596.1|3981546_3982407_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_011073597.1|3982409_3983501_-	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	38.5	2.6e-07
WP_011073598.1|3983515_3984766_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_011073599.1|3985020_3985665_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
WP_011073600.1|3985666_3986521_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_011073601.1|3986633_3987581_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	37.5	1.5e-43
WP_011073602.1|3987654_3989517_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.5	6.9e-37
WP_011073603.1|3989922_3990456_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_011073604.1|3990455_3991049_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_011073605.1|3991045_3992002_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_011073606.1|3992074_3992764_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_011073607.1|3993109_3995194_+	M13 family peptidase	NA	A0A1V0SHG2	Klosneuvirus	30.6	5.3e-94
WP_011073608.1|3995404_3996190_+	RelA/SpoT domain-containing protein	NA	NA	NA	NA	NA
WP_011073609.1|3996394_3996802_+	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
WP_011073610.1|3996847_3997348_+	DUF4447 family protein	NA	NA	NA	NA	NA
WP_011073611.1|3997700_3998243_+	PH domain-containing protein	NA	NA	NA	NA	NA
WP_037422212.1|3998726_3999191_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	44.0	4.8e-32
WP_011073613.1|3999532_4000456_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	79.1	3.0e-142
WP_011073614.1|4000797_4002486_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_011073615.1|4002559_4002994_-	DUF3069 domain-containing protein	NA	NA	NA	NA	NA
WP_011073616.1|4003017_4003545_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_005054087.1|4003663_4004866_-|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011073617.1|4005000_4006896_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.4	2.5e-18
WP_011073618.1|4006897_4007695_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011073619.1|4007856_4009038_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_011073620.1|4009057_4009837_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_011073621.1|4010039_4010825_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011073622.1|4010824_4011562_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011073623.1|4011555_4012641_+	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	33.3	1.5e-23
WP_011073624.1|4012956_4014231_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_011073625.1|4014245_4014473_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_172966569.1|4014638_4014872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172966570.1|4014920_4015967_+	DUF2628 domain-containing protein	NA	NA	NA	NA	NA
WP_011073626.1|4016386_4017025_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_011073627.1|4017036_4017648_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_011073628.1|4018065_4019856_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
WP_011073629.1|4019909_4020665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011073630.1|4021228_4022200_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005054087.1|4023619_4024822_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
4023568:4023586	attR	TGTTCATAATTCTGTGTCA	NA	NA	NA	NA
WP_164925766.1|4025078_4025468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011073631.1|4025519_4026725_+|transposase	IS256-like element ISSod5 family transposase	transposase	A0A218MNI5	uncultured_virus	75.0	2.0e-77
>prophage 16
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	4282928	4356783	4969811	protease,tRNA,transposase	Tupanvirus(11.11%)	52	NA	NA
WP_011073824.1|4282928_4284674_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L2F0	Tupanvirus	35.1	1.1e-92
WP_011073825.1|4284677_4285373_+	cell division protein FtsN	NA	NA	NA	NA	NA
WP_011073826.1|4285690_4285915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011073827.1|4286112_4287048_-	paraslipin	NA	NA	NA	NA	NA
WP_011073828.1|4287047_4287983_-	paraslipin	NA	NA	NA	NA	NA
WP_011073829.1|4288000_4288465_-	NfeD family protein	NA	NA	NA	NA	NA
WP_011073830.1|4288950_4289703_+	ion channel protein Tsx	NA	NA	NA	NA	NA
WP_011073831.1|4289817_4290576_-	uridine phosphorylase	NA	NA	NA	NA	NA
WP_011073832.1|4290988_4291201_+	DUF465 domain-containing protein	NA	NA	NA	NA	NA
WP_011073833.1|4291320_4292643_+|transposase	IS4-like element ISSod7 family transposase	transposase	NA	NA	NA	NA
WP_011073834.1|4292690_4293866_-	type III PLP-dependent enzyme	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	30.0	3.4e-42
WP_011073835.1|4294270_4294753_-	periplasmic protein	NA	NA	NA	NA	NA
WP_011073836.1|4294989_4296534_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_011073837.1|4296611_4297451_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011073838.1|4297611_4298343_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011073839.1|4298867_4299197_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_011073840.1|4299376_4301101_+	DUF3373 domain-containing protein	NA	NA	NA	NA	NA
WP_011073841.1|4301158_4302544_+	tetrathionate reductase family octaheme c-type cytochrome	NA	NA	NA	NA	NA
WP_011073842.1|4302777_4304280_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_011073843.1|4304543_4306193_+	ATP-binding cassette domain-containing protein	NA	F2Y165	Organic_Lake_phycodnavirus	23.3	1.2e-08
WP_011073844.1|4306195_4308280_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	24.5	8.0e-18
WP_011073845.1|4308272_4309598_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011073846.1|4309610_4324673_+	VCBS domain-containing protein	NA	NA	NA	NA	NA
WP_164925781.1|4324919_4326080_+	sulfate transporter	NA	NA	NA	NA	NA
WP_011073848.1|4326140_4327145_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011073849.1|4327141_4327786_-	ester cyclase	NA	NA	NA	NA	NA
WP_011073850.1|4327785_4328922_-	alkene reductase	NA	NA	NA	NA	NA
WP_011073851.1|4329033_4329945_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_164925920.1|4330023_4331835_-	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA	NA
WP_011073853.1|4332030_4332639_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011073854.1|4333082_4333664_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_011073855.1|4333908_4335087_+	flagellin lysine-N-methylase	NA	NA	NA	NA	NA
WP_011073856.1|4335340_4335865_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_011073857.1|4335883_4337206_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.5	1.6e-43
WP_011073858.1|4337351_4337738_+	DUF971 domain-containing protein	NA	NA	NA	NA	NA
WP_164925782.1|4338056_4338380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005054087.1|4338425_4339628_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_164925783.1|4339624_4340206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073859.1|4341821_4343387_+	cryptochrome/photolyase family protein	NA	E3T4R9	Cafeteria_roenbergensis_virus	28.3	7.3e-48
WP_011073860.1|4343412_4344123_+	SDR family oxidoreductase	NA	Q56AQ6	Bacillus_thuringiensis_phage	35.4	5.9e-29
WP_011073861.1|4344167_4344644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073862.1|4344675_4345227_-	response regulator	NA	NA	NA	NA	NA
WP_011073863.1|4345223_4346507_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_011073864.1|4346509_4347430_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011073865.1|4347610_4349458_+	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_011073866.1|4349459_4349816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073867.1|4349997_4351053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073868.1|4351052_4352381_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_011073869.1|4352377_4353766_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_011073870.1|4354048_4354966_-	RNA pseudouridylate synthase	NA	NA	NA	NA	NA
WP_011073871.1|4355018_4355594_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
WP_141135407.1|4355623_4356783_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
>prophage 17
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	4416263	4473744	4969811	transposase	uncultured_virus(13.33%)	46	NA	NA
WP_011070548.1|4416263_4417478_-|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_011073918.1|4418798_4420622_-	DNA helicase RecQ	NA	A0A2K9L021	Tupanvirus	37.1	2.1e-86
WP_011073919.1|4420873_4421338_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_011073920.1|4421554_4422439_+	EamA family transporter RarD	NA	NA	NA	NA	NA
WP_011073921.1|4422482_4423001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925787.1|4423105_4424425_-	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
WP_006079871.1|4424747_4424921_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_006079870.1|4424927_4425164_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_011073923.1|4425285_4425963_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_011073924.1|4426082_4427312_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.2	1.0e-36
WP_011073925.1|4427312_4427771_+	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	60.1	3.6e-48
WP_011073926.1|4427802_4428396_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_011073927.1|4428530_4430519_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_011073928.1|4430786_4431437_+	GTP cyclohydrolase I FolE	NA	A0A140B3H5	Vibrio_phage	54.9	1.2e-57
WP_011073929.1|4431525_4432173_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_011073930.1|4432346_4433060_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_011073931.1|4433269_4434133_+	YicC family protein	NA	NA	NA	NA	NA
WP_011070721.1|4435229_4436432_-|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.1	6.6e-81
WP_164925788.1|4436509_4437184_+	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_011073932.1|4437395_4438046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011073933.1|4438426_4438924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073934.1|4438920_4439625_-	DUF3800 domain-containing protein	NA	Q71TB8	Escherichia_phage	51.1	1.2e-66
WP_011073935.1|4439635_4441123_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011073936.1|4441119_4442733_-	type I restriction-modification system subunit M	NA	A0A220A2U5	Liberibacter_phage	26.1	9.3e-22
WP_011073937.1|4442860_4443979_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	25.8	2.5e-18
WP_011073938.1|4444283_4447850_-	type I restriction-modification system endonuclease	NA	NA	NA	NA	NA
WP_164925630.1|4447975_4449050_+|transposase	IS3-like element ISSod2 family transposase	transposase	S5WIU1	Leptospira_phage	39.4	2.2e-43
WP_011073939.1|4449229_4450111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925921.1|4452772_4452976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011073940.1|4453217_4454021_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_011073941.1|4455408_4455651_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_141135407.1|4455988_4457148_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011073942.1|4457401_4458379_+	TerC family protein	NA	K7QKE8	Escherichia_phage	34.9	3.3e-38
WP_011073943.1|4458978_4459548_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_011073945.1|4460590_4461235_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_011073946.1|4461238_4462603_+	Ktr system potassium transporter B	NA	NA	NA	NA	NA
WP_164925922.1|4462704_4463667_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_011073948.1|4463873_4465079_+|transposase	IS256-like element ISSod5 family transposase	transposase	A0A218MNI5	uncultured_virus	75.0	4.4e-77
WP_011073949.1|4465825_4466653_-	OmpA family protein	NA	NA	NA	NA	NA
WP_011073950.1|4466657_4467392_-	flagellar motor protein	NA	NA	NA	NA	NA
WP_011073951.1|4467561_4468194_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_011073952.1|4468446_4469196_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.7	1.9e-17
WP_164925923.1|4469238_4470075_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_011073954.1|4470104_4471010_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_011073955.1|4471058_4471868_-	phosphate ABC transporter substrate-binding protein PstS	NA	NA	NA	NA	NA
WP_141135407.1|4472585_4473744_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
>prophage 18
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	4621280	4678835	4969811	transposase	Enterobacteria_phage(16.67%)	55	NA	NA
WP_011074073.1|4621280_4622495_-|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.7	3.1e-123
WP_172966530.1|4624140_4624401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925703.1|4624333_4625254_+|transposase	IS1595-like element ISSod11 family transposase	transposase	NA	NA	NA	NA
WP_011070548.1|4625360_4626575_+|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_164925932.1|4626646_4627024_+	adhesin	NA	NA	NA	NA	NA
WP_011074075.1|4627128_4629597_+	CS1-pili formation C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_164925794.1|4629593_4629983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141135407.1|4629997_4631156_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925795.1|4631179_4632040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074076.1|4632042_4632681_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011074077.1|4632777_4636203_+	transporter substrate-binding domain-containing protein	NA	A0A1V0SGX0	Hokovirus	27.1	8.2e-36
WP_011074078.1|4636212_4637316_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.2	5.7e-23
WP_011074079.1|4637296_4637977_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011074080.1|4637985_4638777_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011074081.1|4638808_4639276_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA	NA
WP_011074082.1|4639277_4639529_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
WP_011074083.1|4639548_4640028_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_164925796.1|4640141_4641122_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_011074085.1|4641491_4643141_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA	NA
WP_011074086.1|4643442_4645359_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.4	4.2e-37
WP_011074087.1|4645434_4645791_-	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
WP_011074088.1|4645827_4646523_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_011074089.1|4646595_4648053_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	40.4	4.3e-26
WP_011074090.1|4648361_4649201_-	ribokinase	NA	NA	NA	NA	NA
WP_011074091.1|4649838_4650036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074092.1|4650044_4650440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074093.1|4650581_4651556_-	2OG-Fe(II) oxygenase	NA	A0A1V0SIE1	Klosneuvirus	35.1	6.4e-18
WP_011074094.1|4651849_4653949_+	5-histidylcysteine sulfoxide synthase	NA	NA	NA	NA	NA
WP_011074095.1|4654069_4656025_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.5	6.4e-25
WP_011074096.1|4656335_4656647_+	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_011074097.1|4656761_4657358_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011074098.1|4657490_4658648_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_011074099.1|4658944_4659478_+	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
WP_011074100.1|4659599_4660646_+	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.3	3.9e-05
WP_011074101.1|4660683_4662099_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_011074102.1|4662168_4662735_-	porin family protein	NA	NA	NA	NA	NA
WP_011074103.1|4663357_4664248_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
WP_164925933.1|4664298_4664787_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_011074105.1|4665133_4665820_+	response regulator	NA	W8CYM9	Bacillus_phage	36.9	2.6e-34
WP_011074106.1|4665834_4667184_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_011074107.1|4667261_4669112_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_011074108.1|4669479_4671000_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011074109.1|4671093_4671597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074110.1|4671625_4672048_-	DUF2809 domain-containing protein	NA	NA	NA	NA	NA
WP_011074111.1|4672254_4672851_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_011074112.1|4672884_4673319_+	DUF1924 domain-containing protein	NA	NA	NA	NA	NA
WP_011074113.1|4673372_4673936_+	diheme cytochrome c	NA	NA	NA	NA	NA
WP_011074114.1|4673928_4674195_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_011074115.1|4674194_4674857_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011074116.1|4674859_4676176_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011074117.1|4676303_4676768_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011074118.1|4676862_4677084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074119.1|4677438_4677951_-	DUF1993 domain-containing protein	NA	NA	NA	NA	NA
WP_164925934.1|4678221_4678458_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_164925935.1|4678397_4678835_-|transposase	transposase	transposase	M4M9P8	Vibrio_phage	56.1	1.3e-10
>prophage 19
NC_004347	Shewanella oneidensis MR-1, complete sequence	4969811	4685651	4746076	4969811	tRNA,transposase	uncultured_virus(28.57%)	42	NA	NA
WP_011074120.1|4685651_4686857_+|transposase	IS256-like element ISSod5 family transposase	transposase	A0A218MNI5	uncultured_virus	75.0	2.0e-77
WP_164925936.1|4687333_4687702_-|transposase	transposase	transposase	M4M9P8	Vibrio_phage	56.1	1.7e-11
WP_164925797.1|4687604_4688060_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011074121.1|4694296_4695202_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011074122.1|4695259_4696156_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_011074123.1|4696451_4696916_+	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_011074124.1|4696915_4697572_+	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_164925937.1|4697757_4699419_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_011074126.1|4699429_4700107_+	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_011074127.1|4700269_4700467_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA	NA
WP_011074128.1|4700484_4703334_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011074129.1|4703360_4703957_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_011074130.1|4704006_4705035_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_011074131.1|4705414_4705615_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA	NA
WP_011074132.1|4705632_4708485_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011074133.1|4708514_4709084_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_011074134.1|4709160_4710144_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_011074135.1|4710230_4712288_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011074136.1|4713123_4714050_-	bile acid:sodium symporter family protein	NA	NA	NA	NA	NA
WP_011074137.1|4714414_4715752_+	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA	NA
WP_011074138.1|4715869_4716103_+	Rad51 domain protein	NA	NA	NA	NA	NA
WP_011074139.1|4716133_4717075_+	DUF4424 domain-containing protein	NA	NA	NA	NA	NA
WP_011074140.1|4717128_4719120_-	ligand-gated channel protein	NA	A0A0P0I887	Acinetobacter_phage	34.8	3.3e-13
WP_011074142.1|4720301_4721171_+	patatin family protein	NA	NA	NA	NA	NA
WP_011074143.1|4721135_4722092_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011074144.1|4722092_4722947_-	EamA family transporter	NA	NA	NA	NA	NA
WP_011074146.1|4724178_4724643_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_011074147.1|4724776_4725754_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_076611923.1|4726104_4727131_-|transposase	IS630-like element ISSod10 family transposase	transposase	M4M9P8	Vibrio_phage	69.6	7.2e-12
WP_011074149.1|4727785_4728340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074150.1|4728586_4730614_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_011074151.1|4730689_4732168_-	insulinase family protein	NA	NA	NA	NA	NA
WP_011074152.1|4732164_4733496_-	insulinase family protein	NA	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	26.9	2.0e-22
WP_011074153.1|4734050_4738955_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_011074154.1|4739238_4740129_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_164925938.1|4740359_4741283_+	esterase	NA	NA	NA	NA	NA
WP_164925798.1|4741485_4741971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011070721.1|4742016_4743219_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.1	6.6e-81
WP_164925799.1|4743215_4743440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925800.1|4743559_4743700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074156.1|4743915_4744893_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011073686.1|4745041_4746076_+|transposase	IS110-like element ISSod14 family transposase	transposase	A0A1X9I619	Streptococcus_phage	23.4	6.8e-10
>prophage 1
NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	161613	12944	53987	161613	transposase,bacteriocin,integrase	Acinetobacter_phage(29.41%)	38	21070:21129	44993:46229
WP_011074356.1|12944_15911_-|transposase	Tn3-like element ISSod9 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	71.6	0.0e+00
WP_011074357.1|16074_16365_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011074358.1|16361_16739_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_011074359.1|16732_17290_+	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	61.9	6.8e-57
WP_011074360.1|18773_19079_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	40.2	1.3e-12
WP_011074361.1|19153_19453_+	HigA family addiction module antidote protein	NA	I6ZVM3	Aeromonas_phage	38.6	3.1e-08
WP_141135407.1|19522_20682_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
21070:21129	attL	GTGTTCTGGTCTAATCCCATCGGACACTTAATTTTGAGACAGTATGGTCAATAAATTAAG	NA	NA	NA	NA
WP_141135407.1|21137_22296_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011074367.1|22778_24653_+	ParB N-terminal domain-containing protein	NA	A0A0F7L836	uncultured_marine_virus	29.2	1.8e-13
WP_011074368.1|24777_25233_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_164925955.1|25378_25723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074370.1|25753_25975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005054087.1|26126_27329_-|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011979515.1|27768_27996_+	hypothetical protein	NA	K7P880	Enterobacteria_phage	41.1	5.6e-10
WP_141135407.1|28345_29505_-|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_164925956.1|29582_30668_+	DUF3560 domain-containing protein	NA	NA	NA	NA	NA
WP_011074373.1|30831_31083_+	antitoxin	NA	NA	NA	NA	NA
WP_011074374.1|31076_31394_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_011074375.1|31538_32027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074377.1|32495_33626_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A221SAN4	Ralstonia_phage	29.1	2.2e-30
WP_011074378.1|33622_34993_+|integrase	site-specific integrase	integrase	A0A221SAN4	Ralstonia_phage	25.6	4.5e-17
WP_011074381.1|35915_37844_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_011074457.1|38326_38530_-|bacteriocin	bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_011074458.1|38541_38751_-|bacteriocin	bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_011074382.1|38935_41113_-	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	28.5	4.6e-40
WP_011074383.1|41112_42360_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011074384.1|43721_44090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925945.1|44151_45012_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_141135407.1|45060_46219_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_193378421.1|46155_46482_-	hypothetical protein	NA	NA	NA	NA	NA
44993:46229	attR	GTGTTCTGGTCTAATCCCATCGGACACTTAATTTTGAGACAGTATGGTCAATAAATTAAGAGGTCTATATGAGTCTGAAAAAATCACATAAGAGTTATCCGCAGGCATTTAAAGATGAAGCCGTCTTGATGGTGCTGGAGCAAGGTTATAGCGTTGCCGATGCGGCAAAGTCTCTTGGAGTTAGCACGAGCCTGCTTTACAACTGGAAGGAAAAACACGAAGCCCTGCAACAAGGCATCACCTTAGAAGAGTCTGAGCGTGATGAGTTGAAGCGATTGCGTAGAGAAAACAAAGAATTACGCATGGAGAAAGAAATTCTAAAAAAGGCAAGCGCCTTCTTTGCGAGAGAAATGAAGTAAGATTTCGTTTCATCAAACTGCAATCTCACCTGTTTCCCATAACACTGTTATGTCGAGTAATGAGTGTCAGTAAGTCAGGCTATTACGATTGGCATAAACGCCCTGCAAACGTGATAAGCGTTGAAACACTGAAGCTTTATCGCCTTGTTCGACAGCTATTTAAGCAAAGTCGAGGCAGCTTAGGGAATCGTGAAATGGTGAAGAAATTGCGCAAGGAAGGCTACCAGGTTGGTCGCTATCTCGTTCGTAAAATTATGCACCGCCTTCGACTCAAAGCAACCCAGCGATGTGCTTACAAGGTGACGACACAGCGAAAACACTCAGATGCAGTGGCTGATAACCTGTTAAACATGAACTTTAATCCAGTATCGGCTAATCAGGTCTGGGCGGGTGACGTGACCTATTTAAAGACGGGTGAAGGCTGGATGTACTTAGCTGTGGTGATGGATTTATATTCACGCCGGATTGTGGGATGGCGCATAGACAAACGCATGACCACAGATTTGATATCCAAGGCATTAATAAAAGCCTACAACCTGCGACAACCAGCGCGAGGGCTGGTATTTCACAGTGACCGAGGCTCGCAATATACCAGTAAACAATTCGGTAGGCTGCTATCGAGCTATGGTATCCGAGCCAGCATGGGTGATGTGGGTGCGTGTTGGGATAATGCCGTTGTTGAGCGATTCTTTGGTAGCTTGAAACACGATTGGATTTTTAAAGTTGCTCAACCAACAAGGGAGTTTATGAAGCAAGATGTGACGGCTTACATCAAATATTACAACTTGGAGCGACTTCATTCTGCTAATAACGATCTGTCACCTGTAGAGTTTGAGAATTCTCAAGTAAAAGTGTCCAGTTTGGGTTGACCAGTACAG	NA	NA	NA	NA
WP_011074385.1|46610_46793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074387.1|47237_47987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074388.1|48736_49027_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_011074389.1|49030_49558_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011074390.1|49744_50431_+	ParA family protein	NA	A0A0A8IL09	Aurantimonas_phage	41.6	4.1e-35
WP_011074391.1|50423_50783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074392.1|50927_51485_+|transposase	IS6-like element ISSod8 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	41.8	1.3e-34
WP_141135407.1|52828_53987_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
>prophage 2
NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	161613	58733	139330	161613	transposase	uncultured_virus(15.0%)	50	NA	NA
WP_011071076.1|58733_59492_-|transposase	IS5-like element ISSod6 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	37.7	6.1e-16
WP_164925946.1|59526_59880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164925947.1|59872_60175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074400.1|60345_60981_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	29.4	6.0e-09
WP_011074401.1|61180_61423_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_011074402.1|61415_61715_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011074403.1|62109_62595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005054087.1|63338_64541_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_164925948.1|65041_65566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074405.1|66534_67125_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	37.8	4.6e-27
WP_011074406.1|67294_67555_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_011074407.1|67554_67866_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_141135407.1|69313_70472_+|transposase	IS3-like element ISSod1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	35.6	7.1e-48
WP_011074409.1|73411_74611_+	AAA family ATPase	NA	A0A240F4U1	Ochrobactrum_phage	26.7	6.9e-22
WP_011074410.1|74610_75705_+	chromosome partitioning protein ParB	NA	A0A1B0V750	Salmonella_phage	40.6	3.1e-45
WP_011071076.1|75736_76495_-|transposase	IS5-like element ISSod6 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	37.7	6.1e-16
WP_011074411.1|77038_77434_+	two pore domain potassium channel family protein	NA	NA	NA	NA	NA
WP_011074412.1|77712_79446_+	amidohydrolase	NA	NA	NA	NA	NA
WP_011074413.1|79655_81470_-	amidohydrolase	NA	NA	NA	NA	NA
WP_011070548.1|82899_84114_+|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_164925942.1|84108_84255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074415.1|84451_85009_+|transposase	IS6-like element ISSod8 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	41.8	1.3e-34
WP_011074416.1|85323_86964_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.7	7.7e-32
WP_164925949.1|87062_87401_+	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
WP_011074417.1|88761_89148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074418.1|89169_89901_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_011074419.1|90084_94311_+	tandem-95 repeat protein	NA	NA	NA	NA	NA
WP_011074420.1|94601_98834_+	tandem-95 repeat protein	NA	NA	NA	NA	NA
WP_164925957.1|99875_100436_+	OmpA family protein	NA	NA	NA	NA	NA
WP_011074420.1|100524_104757_+	tandem-95 repeat protein	NA	NA	NA	NA	NA
WP_164925950.1|106120_106579_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011073373.1|106553_107594_+|transposase	IS481-like element ISSod13 family transposase	transposase	A0A077SLK2	Escherichia_phage	84.4	3.0e-175
WP_011074424.1|107888_108812_-|transposase	IS5-like element ISSod12 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	80.5	2.0e-146
WP_011074426.1|109107_109497_+	YgiW/YdeI family stress tolerance OB fold protein	NA	A0A1I9LJU6	Stx_converting_phage	45.8	1.3e-14
WP_076611921.1|113126_114278_+|transposase	IS3-like element ISSod17 family transposase	transposase	U5P429	Shigella_phage	67.7	2.5e-106
WP_011074430.1|114491_115694_-|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.1	6.6e-81
WP_011074431.1|116107_116518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011074432.1|116514_116973_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_164925951.1|118855_120610_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_011070548.1|120597_121812_-|transposase	IS4-like element ISSod3 family transposase	transposase	A4KWT9	Enterobacteria_phage	55.9	6.3e-124
WP_193378422.1|122088_122331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074433.1|125217_126186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164925958.1|126481_128746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011074435.1|128754_130485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011073373.1|130883_131924_+|transposase	IS481-like element ISSod13 family transposase	transposase	A0A077SLK2	Escherichia_phage	84.4	3.0e-175
WP_005054087.1|132329_133532_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
WP_011074462.1|135799_136192_+	DUF5086 family protein	NA	NA	NA	NA	NA
WP_164925959.1|136566_137412_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_006081628.1|137524_138223_+	DUF2931 family protein	NA	NA	NA	NA	NA
WP_011073373.1|138289_139330_-|transposase	IS481-like element ISSod13 family transposase	transposase	A0A077SLK2	Escherichia_phage	84.4	3.0e-175
